CsaV3_1G032840 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G032840
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 19919282 .. 19919486 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTACTGGAATGCATGGGTCATTTGGCTTCTATGAAGTGGTCATGAATCTCCTGAACATGAAAATTATTATCCACATTCAACCATGCCTGGACATAACCTGTGATGAGACACTGTACAAAACCTTATTGGAACAAAGTAGTTTGTCAAGGTCGTCGTTCGTATGTGGATATAAGTTGAAACCTTTTGAACCGTACAAATCTTGA

mRNA sequence

TTTACTGGAATGCATGGGTCATTTGGCTTCTATGAAGTGGTCATGAATCTCCTGAACATGAAAATTATTATCCACATTCAACCATGCCTGGACATAACCTGTGATGAGACACTGTACAAAACCTTATTGGAACAAAGTAGTTTGTCAAGGTCGTCGTTCGTATGTGGATATAAGTTGAAACCTTTTGAACCGTACAAATCTTG

Coding sequence (CDS)

TTTACTGGAATGCATGGGTCATTTGGCTTCTATGAAGTGGTCATGAATCTCCTGAACATGAAAATTATTATCCACATTCAACCATGCCTGGACATAACCTGTGATGAGACACTGTACAAAACCTTATTGGAACAAAGTAGTTTGTCAAGGTCGTCGTTCGTATGTGGATATAAGTTGAAACCTTTTGAACCGTACAAATCTTG

Protein sequence

FTGMHGSFGFYEVVMNLLNMKIIIHIQPCLDITCDETLYKTLLEQSSLSRSSFVCGYKLKPFEPYKSX
Homology
[Close]
BLAST of CsaV3_1G032840 vs. NCBI nr
Match: KGN54676.1 (hypothetical protein Csa_4G420170 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-08
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 12 EVVMNLLNMKIIIHIQPCLDITCDETLYKTLLEQSSLSR-SSFVCGYKLKPFEPYKS 68
          +V+++LLNM++I+H QP +DIT DETLYKTLLEQS+LSR S         PFEPY+S
Sbjct: 2  KVIIDLLNMEVILHSQPDMDITYDETLYKTLLEQSNLSRLSGLYMDASWNPFEPYRS 58

[Close]
BLAST of CsaV3_1G032840 vs. TrEMBL
Match: tr|A0A0A0L3G1|A0A0A0L3G1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420170 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 12 EVVMNLLNMKIIIHIQPCLDITCDETLYKTLLEQSSLSR-SSFVCGYKLKPFEPYKS 68
          +V+++LLNM++I+H QP +DIT DETLYKTLLEQS+LSR S         PFEPY+S
Sbjct: 2  KVIIDLLNMEVILHSQPDMDITYDETLYKTLLEQSNLSRLSGLYMDASWNPFEPYRS 58

The following BLAST results are available for this feature:
BLAST of CsaV3_1G032840 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54676.12.1e-0859.65hypothetical protein Csa_4G420170 [Cucumis sativus][more]
BLAST of CsaV3_1G032840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G032840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G032840 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L3G1|A0A0A0L3G1_CUCSA1.4e-0859.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420170 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G032840.1CsaV3_1G032840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G032840Cucumber (Chinese Long) v3cuccucB048
CsaV3_1G032840Silver-seed gourdcarcucB0169
CsaV3_1G032840Silver-seed gourdcarcucB0583
CsaV3_1G032840Silver-seed gourdcarcucB0839
CsaV3_1G032840Silver-seed gourdcarcucB0998
CsaV3_1G032840Cucumber (Gy14) v2cgybcucB001
CsaV3_1G032840Cucumber (Gy14) v2cgybcucB251
CsaV3_1G032840Cucumber (Gy14) v1cgycucB019
CsaV3_1G032840Cucumber (Gy14) v1cgycucB333
CsaV3_1G032840Cucurbita maxima (Rimu)cmacucB0236
CsaV3_1G032840Cucurbita maxima (Rimu)cmacucB0475
CsaV3_1G032840Cucurbita maxima (Rimu)cmacucB0776
CsaV3_1G032840Cucurbita maxima (Rimu)cmacucB1003
CsaV3_1G032840Cucurbita moschata (Rifu)cmocucB0223
CsaV3_1G032840Cucurbita moschata (Rifu)cmocucB0464
CsaV3_1G032840Cucurbita moschata (Rifu)cmocucB0761
CsaV3_1G032840Cucurbita moschata (Rifu)cmocucB0988
CsaV3_1G032840Cucurbita pepo (Zucchini)cpecucB0019
CsaV3_1G032840Cucurbita pepo (Zucchini)cpecucB0058
CsaV3_1G032840Cucurbita pepo (Zucchini)cpecucB0587
CsaV3_1G032840Cucurbita pepo (Zucchini)cpecucB0633
CsaV3_1G032840Wild cucumber (PI 183967)cpicucB000
CsaV3_1G032840Wild cucumber (PI 183967)cpicucB313
CsaV3_1G032840Bottle gourd (USVL1VR-Ls)cuclsiB016
CsaV3_1G032840Bottle gourd (USVL1VR-Ls)cuclsiB032
CsaV3_1G032840Melon (DHL92) v3.5.1cucmeB008
CsaV3_1G032840Melon (DHL92) v3.5.1cucmeB011
CsaV3_1G032840Melon (DHL92) v3.5.1cucmeB089
CsaV3_1G032840Melon (DHL92) v3.6.1cucmedB010
CsaV3_1G032840Melon (DHL92) v3.6.1cucmedB083
CsaV3_1G032840Watermelon (Charleston Gray)cucwcgB027
CsaV3_1G032840Watermelon (Charleston Gray)cucwcgB039
CsaV3_1G032840Watermelon (97103) v1cucwmB014
CsaV3_1G032840Watermelon (97103) v1cucwmB058
CsaV3_1G032840Watermelon (97103) v1cucwmB082
CsaV3_1G032840Watermelon (97103) v2cucwmbB011
CsaV3_1G032840Watermelon (97103) v2cucwmbB029
CsaV3_1G032840Watermelon (97103) v2cucwmbB031
CsaV3_1G032840Wax gourdcucwgoB023
CsaV3_1G032840Wax gourdcucwgoB027
CsaV3_1G032840Wax gourdcucwgoB032