CsaV3_1G031320.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACAAGTCATGGATGACCCAAAATAGGATGTCAAGAGAATATGATTTAGGAGTCGAAAGGTTCATTAAATTTGGGTTGAGTCATGCCAAAGGTCTTAATTCAATTAGATGTCCATGTTTGAATTGCGGCAATCGTTTACTTAAGGATGTCTCAACAGTTCGGTATCATCTGTATGCCAATGGAATTGATAAGAGTTACAAGGTATGGTTCTGGCATGGTGAAGAATTGAACTCAGATAACGTTGCCAACACGATGGAAACTACAGTGGATGAAACTGATGAAAACGACGATTTATTTAATACAATTAATATGGTACAATCTGTTCAAGAACAATCTTTTAATGCATCAAATACCTTCGACACTATGTTTGATGACGCGAAGAAACCCTTATACCCAGGATGTAAGAAATTCACAAAGTTATCAGCCCTCGTGAGATTGTATAACCTGAAGGTTAGGTATGGTTGGACGAATACTAGCTTCTCTGAA ATGGACAAGTCATGGATGACCCAAAATAGGATGTCAAGAGAATATGATTTAGGAGTCGAAAGGTTCATTAAATTTGGGTTGAGTCATGCCAAAGGTCTTAATTCAATTAGATGTCCATGTTTGAATTGCGGCAATCGTTTACTTAAGGATGTCTCAACAGTTCGGTATCATCTGTATGCCAATGGAATTGATAAGAGTTACAAGGTATGGTTCTGGCATGGTGAAGAATTGAACTCAGATAACGTTGCCAACACGATGGAAACTACAGTGGATGAAACTGATGAAAACGACGATTTATTTAATACAATTAATATGGTACAATCTGTTCAAGAACAATCTTTTAATGCATCAAATACCTTCGACACTATGTTTGATGACGCGAAGAAACCCTTATACCCAGGATGTAAGAAATTCACAAAGTTATCAGCCCTCGTGAGATTGTATAACCTGAAGGTTAGGTATGGTTGGACGAATACTAGCTTCTCTGAA ATGGACAAGTCATGGATGACCCAAAATAGGATGTCAAGAGAATATGATTTAGGAGTCGAAAGGTTCATTAAATTTGGGTTGAGTCATGCCAAAGGTCTTAATTCAATTAGATGTCCATGTTTGAATTGCGGCAATCGTTTACTTAAGGATGTCTCAACAGTTCGGTATCATCTGTATGCCAATGGAATTGATAAGAGTTACAAGGTATGGTTCTGGCATGGTGAAGAATTGAACTCAGATAACGTTGCCAACACGATGGAAACTACAGTGGATGAAACTGATGAAAACGACGATTTATTTAATACAATTAATATGGTACAATCTGTTCAAGAACAATCTTTTAATGCATCAAATACCTTCGACACTATGTTTGATGACGCGAAGAAACCCTTATACCCAGGATGTAAGAAATTCACAAAGTTATCAGCCCTCGTGAGATTGTATAACCTGAAGGTTAGGTATGGTTGGACGAATACTAGCTTCTCTGAA MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINMVQSVQEQSFNASNTFDTMFDDAKKPLYPGCKKFTKLSALVRLYNLKVRYGWTNTSFSE
BLAST of CsaV3_1G031320.1 vs. NCBI nr
Match: XP_022159378.1 (uncharacterized protein LOC111025795 [Momordica charantia]) HSP 1 Score: 187.2 bits (474), Expect = 4.5e-44 Identity = 89/164 (54.27%), Postives = 109/164 (66.46%), Query Frame = 0
BLAST of CsaV3_1G031320.1 vs. NCBI nr
Match: XP_022156813.1 (uncharacterized protein LOC111023653 [Momordica charantia]) HSP 1 Score: 170.6 bits (431), Expect = 4.3e-39 Identity = 82/157 (52.23%), Postives = 98/157 (62.42%), Query Frame = 0
BLAST of CsaV3_1G031320.1 vs. NCBI nr
Match: XP_011652815.1 (PREDICTED: uncharacterized protein LOC105435113 [Cucumis sativus]) HSP 1 Score: 161.4 bits (407), Expect = 2.6e-36 Identity = 80/163 (49.08%), Postives = 97/163 (59.51%), Query Frame = 0
BLAST of CsaV3_1G031320.1 vs. NCBI nr
Match: XP_004142581.2 (PREDICTED: uncharacterized protein LOC101205266 [Cucumis sativus]) HSP 1 Score: 160.2 bits (404), Expect = 5.8e-36 Identity = 79/163 (48.47%), Postives = 97/163 (59.51%), Query Frame = 0
BLAST of CsaV3_1G031320.1 vs. NCBI nr
Match: CAN72425.1 (hypothetical protein VITISV_011055 [Vitis vinifera]) HSP 1 Score: 148.7 bits (374), Expect = 1.8e-32 Identity = 69/162 (42.59%), Postives = 91/162 (56.17%), Query Frame = 0
BLAST of CsaV3_1G031320.1 vs. TrEMBL
Match: tr|A5BJV7|A5BJV7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_011055 PE=4 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32 Identity = 69/162 (42.59%), Postives = 91/162 (56.17%), Query Frame = 0
BLAST of CsaV3_1G031320.1 vs. TrEMBL
Match: tr|A5ALA6|A5ALA6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_030061 PE=4 SV=1) HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32 Identity = 70/162 (43.21%), Postives = 93/162 (57.41%), Query Frame = 0
BLAST of CsaV3_1G031320.1 vs. TrEMBL
Match: tr|A5B592|A5B592_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019902 PE=4 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 2.6e-32 Identity = 69/163 (42.33%), Postives = 92/163 (56.44%), Query Frame = 0
BLAST of CsaV3_1G031320.1 vs. TrEMBL
Match: tr|A5AM06|A5AM06_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042965 PE=4 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 2.6e-32 Identity = 69/163 (42.33%), Postives = 92/163 (56.44%), Query Frame = 0
BLAST of CsaV3_1G031320.1 vs. TrEMBL
Match: tr|A5C8Z9|A5C8Z9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_020028 PE=4 SV=1) HSP 1 Score: 146.7 bits (369), Expect = 4.4e-32 Identity = 69/163 (42.33%), Postives = 92/163 (56.44%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
|