CsaV3_1G031320 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G031320
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTransposon, En/Spm-like protein
Locationchr1 : 18518085 .. 18518573 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAGTCATGGATGACCCAAAATAGGATGTCAAGAGAATATGATTTAGGAGTCGAAAGGTTCATTAAATTTGGGTTGAGTCATGCCAAAGGTCTTAATTCAATTAGATGTCCATGTTTGAATTGCGGCAATCGTTTACTTAAGGATGTCTCAACAGTTCGGTATCATCTGTATGCCAATGGAATTGATAAGAGTTACAAGGTATGGTTCTGGCATGGTGAAGAATTGAACTCAGATAACGTTGCCAACACGATGGAAACTACAGTGGATGAAACTGATGAAAACGACGATTTATTTAATACAATTAATATGGTACAATCTGTTCAAGAACAATCTTTTAATGCATCAAATACCTTCGACACTATGTTTGATGACGCGAAGAAACCCTTATACCCAGGATGTAAGAAATTCACAAAGTTATCAGCCCTCGTGAGATTGTATAACCTGAAGGTTAGGTATGGTTGGACGAATACTAGCTTCTCTGAA

mRNA sequence

ATGGACAAGTCATGGATGACCCAAAATAGGATGTCAAGAGAATATGATTTAGGAGTCGAAAGGTTCATTAAATTTGGGTTGAGTCATGCCAAAGGTCTTAATTCAATTAGATGTCCATGTTTGAATTGCGGCAATCGTTTACTTAAGGATGTCTCAACAGTTCGGTATCATCTGTATGCCAATGGAATTGATAAGAGTTACAAGGTATGGTTCTGGCATGGTGAAGAATTGAACTCAGATAACGTTGCCAACACGATGGAAACTACAGTGGATGAAACTGATGAAAACGACGATTTATTTAATACAATTAATATGGTACAATCTGTTCAAGAACAATCTTTTAATGCATCAAATACCTTCGACACTATGTTTGATGACGCGAAGAAACCCTTATACCCAGGATGTAAGAAATTCACAAAGTTATCAGCCCTCGTGAGATTGTATAACCTGAAGGTTAGGTATGGTTGGACGAATACTAGCTTCTCTGAA

Coding sequence (CDS)

ATGGACAAGTCATGGATGACCCAAAATAGGATGTCAAGAGAATATGATTTAGGAGTCGAAAGGTTCATTAAATTTGGGTTGAGTCATGCCAAAGGTCTTAATTCAATTAGATGTCCATGTTTGAATTGCGGCAATCGTTTACTTAAGGATGTCTCAACAGTTCGGTATCATCTGTATGCCAATGGAATTGATAAGAGTTACAAGGTATGGTTCTGGCATGGTGAAGAATTGAACTCAGATAACGTTGCCAACACGATGGAAACTACAGTGGATGAAACTGATGAAAACGACGATTTATTTAATACAATTAATATGGTACAATCTGTTCAAGAACAATCTTTTAATGCATCAAATACCTTCGACACTATGTTTGATGACGCGAAGAAACCCTTATACCCAGGATGTAAGAAATTCACAAAGTTATCAGCCCTCGTGAGATTGTATAACCTGAAGGTTAGGTATGGTTGGACGAATACTAGCTTCTCTGAA

Protein sequence

MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYANGIDKSYKVWFWHGEELNSDNVANTMETTVDETDENDDLFNTINMVQSVQEQSFNASNTFDTMFDDAKKPLYPGCKKFTKLSALVRLYNLKVRYGWTNTSFSE
BLAST of CsaV3_1G031320 vs. NCBI nr
Match: XP_022159378.1 (uncharacterized protein LOC111025795 [Momordica charantia])

HSP 1 Score: 187.2 bits (474), Expect = 4.5e-44
Identity = 89/164 (54.27%), Postives = 109/164 (66.46%), Query Frame = 0

Query: 1   MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60
           M KSWM +NR+S+EY++ V+ FI+FGLSHA G NSIRCPCL CGN + KD++ VR HLY+
Sbjct: 1   MXKSWMKKNRLSKEYEVXVQTFIEFGLSHANGSNSIRCPCLKCGNLICKDIAIVRDHLYS 60

Query: 61  NGIDKSYKVWFWHGEEL-NSDNVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT 120
           NGID+SY VWFWHGE+L N                                        +
Sbjct: 61  NGIDQSYXVWFWHGEDLGNIPAEQTYNNDALESDEDDLDFFEVGDLVQYVQDEFSDVPKS 120

Query: 121 FDTMFDDAKKPLYPGCKKFTKLSALVRLYNLKVRYGWTNTSFSE 164
           F+TMF +AKKPLYPGC KFTK+SALVRLYNLKVR+GW+N+SFSE
Sbjct: 121 FETMFHNAKKPLYPGCGKFTKVSALVRLYNLKVRFGWSNSSFSE 164

BLAST of CsaV3_1G031320 vs. NCBI nr
Match: XP_022156813.1 (uncharacterized protein LOC111023653 [Momordica charantia])

HSP 1 Score: 170.6 bits (431), Expect = 4.3e-39
Identity = 82/157 (52.23%), Postives = 98/157 (62.42%), Query Frame = 0

Query: 8   QNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYANGIDKSY 67
           +NR+  +Y+LGVE FI+FG  HA G   IRCPCL CG R+ KD +T+R HLY +GID+SY
Sbjct: 4   KNRLFEDYELGVESFIEFGFHHANGSKIIRCPCLKCGTRIDKDAATIRNHLYEHGIDQSY 63

Query: 68  KVWFWHGEE-LNSDNVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFDTMFDD 127
           +VWFWHGEE     +                                     +F+ MFD+
Sbjct: 64  RVWFWHGEEHAPRTDEDRLNDEFNKNHEDDNDLFDVIDMVQTVYDEISHVPKSFENMFDN 123

Query: 128 AKKPLYPGCKKFTKLSALVRLYNLKVRYGWTNTSFSE 164
           AKKPLYPGCKKFTKLSALVRLYNLKVRY WTN+SFSE
Sbjct: 124 AKKPLYPGCKKFTKLSALVRLYNLKVRYSWTNSSFSE 160

BLAST of CsaV3_1G031320 vs. NCBI nr
Match: XP_011652815.1 (PREDICTED: uncharacterized protein LOC105435113 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 2.6e-36
Identity = 80/163 (49.08%), Postives = 97/163 (59.51%), Query Frame = 0

Query: 1   MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60
           MDKSWM ++R+S++Y+LGVE FIKFG S+    + IRCPCL CGN        VR HLY 
Sbjct: 1   MDKSWMHKSRLSKDYELGVENFIKFGFSNTTS-SYIRCPCLKCGNCEKHSRKGVRDHLYV 60

Query: 61  NGIDKSYKVWFWHGEELNSDNVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTF 120
           NGID+SYK WFWHGEEL + +                                      F
Sbjct: 61  NGIDESYKFWFWHGEELPNSSFYDESSKFDTHTCEDQDVGSVKEMIEVAHEEYSKDPTGF 120

Query: 121 DTMFDDAKKPLYPGCKKFTKLSALVRLYNLKVRYGWTNTSFSE 164
           + +  DA KPLY GCKK+TKLS LV+LYNLKVRYGW++TSFSE
Sbjct: 121 EKLLIDAGKPLYEGCKKYTKLSTLVKLYNLKVRYGWSDTSFSE 162

BLAST of CsaV3_1G031320 vs. NCBI nr
Match: XP_004142581.2 (PREDICTED: uncharacterized protein LOC101205266 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 5.8e-36
Identity = 79/163 (48.47%), Postives = 97/163 (59.51%), Query Frame = 0

Query: 1   MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60
           MDKSWM ++R+S++Y+LGVE FIKFG S+    + IRCPCL CGN        VR HLY 
Sbjct: 1   MDKSWMHKSRLSKDYELGVENFIKFGFSNTTS-SYIRCPCLKCGNCEKHSRKGVRDHLYV 60

Query: 61  NGIDKSYKVWFWHGEELNSDNVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTF 120
           NGID+SYK WFWHGEEL + +                                      F
Sbjct: 61  NGIDESYKFWFWHGEELPNSSFYDESSKFDTHTCEDQDVGSVKEMIEVAHEEYSKDPTGF 120

Query: 121 DTMFDDAKKPLYPGCKKFTKLSALVRLYNLKVRYGWTNTSFSE 164
           + +  DA+KPLY GCKK+TKLS LV+LYNLKVRYGW++TSF E
Sbjct: 121 EKLLIDAEKPLYEGCKKYTKLSTLVKLYNLKVRYGWSDTSFLE 162

BLAST of CsaV3_1G031320 vs. NCBI nr
Match: CAN72425.1 (hypothetical protein VITISV_011055 [Vitis vinifera])

HSP 1 Score: 148.7 bits (374), Expect = 1.8e-32
Identity = 69/162 (42.59%), Postives = 91/162 (56.17%), Query Frame = 0

Query: 2   DKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYAN 61
           ++ WM+++R S EYD GVE FI F L+H+    SI+CPCL CGN L +    +R HL+ N
Sbjct: 3   NRDWMSKDRRSVEYDEGVENFINFALAHSTNHTSIKCPCLRCGNMLCQTPQVIREHLFFN 62

Query: 62  GIDKSYKVWFWHGEELNSDNVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFD 121
           GID +Y+VW+WHGE+                                           F 
Sbjct: 63  GIDLNYRVWYWHGEK-GPSGAFSNVPQQRYDKCEYNDVADTIDMVNAAQVNCMNDPQVFG 122

Query: 122 TMFDDAKKPLYPGCKKFTKLSALVRLYNLKVRYGWTNTSFSE 164
            + +DA+KPLYPGC K+TKLSALV+LYNLK RYGW++  FSE
Sbjct: 123 RLLEDAEKPLYPGCMKYTKLSALVKLYNLKARYGWSDKGFSE 163

BLAST of CsaV3_1G031320 vs. TrEMBL
Match: tr|A5BJV7|A5BJV7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_011055 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 69/162 (42.59%), Postives = 91/162 (56.17%), Query Frame = 0

Query: 2   DKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYAN 61
           ++ WM+++R S EYD GVE FI F L+H+    SI+CPCL CGN L +    +R HL+ N
Sbjct: 3   NRDWMSKDRRSVEYDEGVENFINFALAHSTNHTSIKCPCLRCGNMLCQTPQVIREHLFFN 62

Query: 62  GIDKSYKVWFWHGEELNSDNVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFD 121
           GID +Y+VW+WHGE+                                           F 
Sbjct: 63  GIDLNYRVWYWHGEK-GPSGAFSNVPQQRYDKCEYNDVADTIDMVNAAQVNCMNDPQVFG 122

Query: 122 TMFDDAKKPLYPGCKKFTKLSALVRLYNLKVRYGWTNTSFSE 164
            + +DA+KPLYPGC K+TKLSALV+LYNLK RYGW++  FSE
Sbjct: 123 RLLEDAEKPLYPGCMKYTKLSALVKLYNLKARYGWSDKGFSE 163

BLAST of CsaV3_1G031320 vs. TrEMBL
Match: tr|A5ALA6|A5ALA6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_030061 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32
Identity = 70/162 (43.21%), Postives = 93/162 (57.41%), Query Frame = 0

Query: 2   DKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYAN 61
           ++ WM+++R   EYD GVE+FI F L+H+    SI+CPCL CGN L +    +R HL+ N
Sbjct: 3   NRDWMSKDRRLVEYDEGVEKFINFALAHSTNHTSIKCPCLRCGNLLCQTPQVIREHLFFN 62

Query: 62  GIDKSYKVWFWHGEELNSDNVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFD 121
           GID SY+VW+WHGE+  S   +                                    F 
Sbjct: 63  GIDLSYRVWYWHGEKGPSGGFS-NVSQQRYDKCKYNDVADTIDMVNAAQVNCMNDPQVFG 122

Query: 122 TMFDDAKKPLYPGCKKFTKLSALVRLYNLKVRYGWTNTSFSE 164
            + +DA+KPLYPGC K+TKLSALV+LYNLK RYGW++  FSE
Sbjct: 123 RLLEDAEKPLYPGCMKYTKLSALVKLYNLKARYGWSDKGFSE 163

BLAST of CsaV3_1G031320 vs. TrEMBL
Match: tr|A5B592|A5B592_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019902 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.6e-32
Identity = 69/163 (42.33%), Postives = 92/163 (56.44%), Query Frame = 0

Query: 1   MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60
           MD+SWM+++RMSREY+ GVE FI F L H      IRCPC+ CGN +    + +R H++ 
Sbjct: 1   MDRSWMSKDRMSREYEEGVEYFINFALEHCPNQRGIRCPCMRCGNLIHHTPNKIREHMFF 60

Query: 61  NGIDKSYKVWFWHGEELNSDNVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTF 120
           NGID+SY  W+WHG E    +                                     +F
Sbjct: 61  NGIDQSYCTWYWHG-EAGPTSSQPTEMAQRYDTMDCGDVASTVEMVHAIEDEFMTDPMSF 120

Query: 121 DTMFDDAKKPLYPGCKKFTKLSALVRLYNLKVRYGWTNTSFSE 164
             + +DA+KPLYP C KFTKLSALV+LYN+K RYGW++ SFS+
Sbjct: 121 KKLLEDAEKPLYPSCIKFTKLSALVKLYNVKARYGWSDKSFSD 162

BLAST of CsaV3_1G031320 vs. TrEMBL
Match: tr|A5AM06|A5AM06_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042965 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.6e-32
Identity = 69/163 (42.33%), Postives = 92/163 (56.44%), Query Frame = 0

Query: 1   MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60
           MD+SWM+++RMSREY+ GVE FI F L H      IRCPC+ CGN +    + +R H++ 
Sbjct: 1   MDRSWMSKDRMSREYEEGVEYFINFALEHCPNQRGIRCPCMRCGNLIHHTPNKIREHMFF 60

Query: 61  NGIDKSYKVWFWHGEELNSDNVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTF 120
           NGID+SY  W+WHG E    +                                     +F
Sbjct: 61  NGIDQSYCTWYWHG-EAGPTSSQPTEMAQRYDTMDCGDVASTVEMVHAIEDEFMTDPMSF 120

Query: 121 DTMFDDAKKPLYPGCKKFTKLSALVRLYNLKVRYGWTNTSFSE 164
             + +DA+KPLYP C KFTKLSALV+LYN+K RYGW++ SFS+
Sbjct: 121 KKLLEDAEKPLYPSCIKFTKLSALVKLYNVKARYGWSDKSFSD 162

BLAST of CsaV3_1G031320 vs. TrEMBL
Match: tr|A5C8Z9|A5C8Z9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_020028 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.4e-32
Identity = 69/163 (42.33%), Postives = 92/163 (56.44%), Query Frame = 0

Query: 1   MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60
           MD+SWM+++RMSREY+ GVE FI F L H    + IRCPC+ CGN +    + +R H++ 
Sbjct: 1   MDRSWMSKDRMSREYEEGVEYFINFALEHCPNQSGIRCPCMRCGNLIHHTPNKIREHMFF 60

Query: 61  NGIDKSYKVWFWHGEELNSDNVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTF 120
           NGID+SY  W WHG E    +                                     +F
Sbjct: 61  NGIDQSYHTWXWHG-EAGPTSRQPTEMAQCYDTMDCGDVASTVQMVHVIDDEFMTDPMSF 120

Query: 121 DTMFDDAKKPLYPGCKKFTKLSALVRLYNLKVRYGWTNTSFSE 164
             + +DA+KPLYPGC KF KLSALV+LYN+K RYGW++ SFS+
Sbjct: 121 KKLLEDAEKPLYPGCIKFXKLSALVKLYNVKARYGWSDKSFSD 162

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022159378.14.5e-4454.27uncharacterized protein LOC111025795 [Momordica charantia][more]
XP_022156813.14.3e-3952.23uncharacterized protein LOC111023653 [Momordica charantia][more]
XP_011652815.12.6e-3649.08PREDICTED: uncharacterized protein LOC105435113 [Cucumis sativus][more]
XP_004142581.25.8e-3648.47PREDICTED: uncharacterized protein LOC101205266 [Cucumis sativus][more]
CAN72425.11.8e-3242.59hypothetical protein VITISV_011055 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A5BJV7|A5BJV7_VITVI1.2e-3242.59Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_011055 PE=4 SV=1[more]
tr|A5ALA6|A5ALA6_VITVI1.5e-3243.21Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_030061 PE=4 SV=1[more]
tr|A5B592|A5B592_VITVI2.6e-3242.33Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019902 PE=4 SV=1[more]
tr|A5AM06|A5AM06_VITVI2.6e-3242.33Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042965 PE=4 SV=1[more]
tr|A5C8Z9|A5C8Z9_VITVI4.4e-3242.33Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_020028 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029480Transpos_assoc
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G031320.1CsaV3_1G031320.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029480Transposase-associated domainPFAMPF13963Transpos_assoccoord: 3..75
e-value: 4.3E-21
score: 75.0
NoneNo IPR availablePANTHERPTHR10775UNCHARACTERIZEDcoord: 6..163
NoneNo IPR availablePANTHERPTHR10775:SF115SUBFAMILY NOT NAMEDcoord: 6..163

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None