CsaV3_1G030580.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G030580.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 17502264 .. 17502454 (+)
Sequence length191
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTGGTAAGCGGGTTAAGATTGTTCCTTCACGCCGTCCGTATGTTCGCCTTGCTGATCGAGGTAAAATTTCTCAAACTATTTTTTATGATAGCTCTACATCTATTTCTGTTGAGAAGTTTGGTGTGTCTCTTGTGGCTTCTGTTTCAACTTCTGGGTCTGATTCACAAGATGGCATATCGTTGGTCGA

mRNA sequence

ATGCGTGGTAAGCGGGTTAAGATTGTTCCTTCACGCCGTCCGTATGTTCGCCTTGCTGATCGAGGTAAAATTTCTCAAACTATTTTTTATGATAGCTCTACATCTATTTCTGTTGAGAAGTTTGGTGTGTCTCTTGTGGCTTCTGTTTCAACTTCTGGGTCTGATTCACAAGATGGCATATCGTTGGTCGA

Coding sequence (CDS)

ATGCGTGGTAAGCGGGTTAAGATTGTTCCTTCACGCCGTCCGTATGTTCGCCTTGCTGATCGAGGTAAAATTTCTCAAACTATTTTTTATGATAGCTCTACATCTATTTCTGTTGAGAAGTTTGGTGTGTCTCTTGTGGCTTCTGTTTCAACTTCTGGGTCTGATTCACAAGATGGCATATCGTTGGTCGA

Protein sequence

MRGKRVKIVPSRRPYVRLADRGKISQTIFYDSSTSISVEKFGVSLVASVSTSGSDSQDGISLVX
Homology
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BLAST of CsaV3_1G030580.1 vs. NCBI nr
Match: XP_011659856.1 (PREDICTED: cell wall protein RBR3-like [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 6.1e-05
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 1  MRGKRVKIVPSRRPYVRLADRGKISQTIFYDSSTSISVEKFGVSLVASVSTSGSDSQDGI 60
          MRGKRVK +PSRRPY R+ADRGK+S T+   SS+S SV+    ++ AS S   SD QD I
Sbjct: 6  MRGKRVKSIPSRRPYSRMADRGKVSYTM--SSSSSESVQDVPTTMAASAS---SDLQDQI 62

Query: 61 SL 63
           L
Sbjct: 66 PL 62

The following BLAST results are available for this feature:
BLAST of CsaV3_1G030580.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011659856.16.1e-0556.45PREDICTED: cell wall protein RBR3-like [Cucumis sativus][more]
BLAST of CsaV3_1G030580.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G030580.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G030580.1 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G030580CsaV3_1G030580gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G030580.1.exon1CsaV3_1G030580.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G030580.1.cds1CsaV3_1G030580.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G030580.1CsaV3_1G030580.1-proteinpolypeptide