CsaV3_1G030580 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G030580
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 17502264 .. 17502454 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTGGTAAGCGGGTTAAGATTGTTCCTTCACGCCGTCCGTATGTTCGCCTTGCTGATCGAGGTAAAATTTCTCAAACTATTTTTTATGATAGCTCTACATCTATTTCTGTTGAGAAGTTTGGTGTGTCTCTTGTGGCTTCTGTTTCAACTTCTGGGTCTGATTCACAAGATGGCATATCGTTGGTCGA

mRNA sequence

ATGCGTGGTAAGCGGGTTAAGATTGTTCCTTCACGCCGTCCGTATGTTCGCCTTGCTGATCGAGGTAAAATTTCTCAAACTATTTTTTATGATAGCTCTACATCTATTTCTGTTGAGAAGTTTGGTGTGTCTCTTGTGGCTTCTGTTTCAACTTCTGGGTCTGATTCACAAGATGGCATATCGTTGGTCGA

Coding sequence (CDS)

ATGCGTGGTAAGCGGGTTAAGATTGTTCCTTCACGCCGTCCGTATGTTCGCCTTGCTGATCGAGGTAAAATTTCTCAAACTATTTTTTATGATAGCTCTACATCTATTTCTGTTGAGAAGTTTGGTGTGTCTCTTGTGGCTTCTGTTTCAACTTCTGGGTCTGATTCACAAGATGGCATATCGTTGGTCGA

Protein sequence

MRGKRVKIVPSRRPYVRLADRGKISQTIFYDSSTSISVEKFGVSLVASVSTSGSDSQDGISLVX
Homology
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BLAST of CsaV3_1G030580 vs. NCBI nr
Match: XP_011659856.1 (PREDICTED: cell wall protein RBR3-like [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 6.1e-05
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 1  MRGKRVKIVPSRRPYVRLADRGKISQTIFYDSSTSISVEKFGVSLVASVSTSGSDSQDGI 60
          MRGKRVK +PSRRPY R+ADRGK+S T+   SS+S SV+    ++ AS S   SD QD I
Sbjct: 6  MRGKRVKSIPSRRPYSRMADRGKVSYTM--SSSSSESVQDVPTTMAASAS---SDLQDQI 62

Query: 61 SL 63
           L
Sbjct: 66 PL 62

The following BLAST results are available for this feature:
BLAST of CsaV3_1G030580 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011659856.16.1e-0556.45PREDICTED: cell wall protein RBR3-like [Cucumis sativus][more]
BLAST of CsaV3_1G030580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G030580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G030580 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G030580.1CsaV3_1G030580.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G030580Cucumber (Chinese Long) v3cuccucB009
CsaV3_1G030580Silver-seed gourdcarcucB0040
CsaV3_1G030580Silver-seed gourdcarcucB0144
CsaV3_1G030580Silver-seed gourdcarcucB0603
CsaV3_1G030580Cucumber (Gy14) v2cgybcucB001
CsaV3_1G030580Cucumber (Gy14) v2cgybcucB059
CsaV3_1G030580Cucumber (Gy14) v1cgycucB353
CsaV3_1G030580Cucurbita maxima (Rimu)cmacucB0073
CsaV3_1G030580Cucurbita maxima (Rimu)cmacucB0116
CsaV3_1G030580Cucurbita moschata (Rifu)cmocucB0060
CsaV3_1G030580Cucurbita moschata (Rifu)cmocucB0104
CsaV3_1G030580Cucurbita pepo (Zucchini)cpecucB0105
CsaV3_1G030580Cucurbita pepo (Zucchini)cpecucB0434
CsaV3_1G030580Cucurbita pepo (Zucchini)cpecucB0800
CsaV3_1G030580Wild cucumber (PI 183967)cpicucB000
CsaV3_1G030580Wild cucumber (PI 183967)cpicucB073
CsaV3_1G030580Bottle gourd (USVL1VR-Ls)cuclsiB010
CsaV3_1G030580Bottle gourd (USVL1VR-Ls)cuclsiB072
CsaV3_1G030580Melon (DHL92) v3.5.1cucmeB058
CsaV3_1G030580Melon (DHL92) v3.5.1cucmeB082
CsaV3_1G030580Melon (DHL92) v3.6.1cucmedB055
CsaV3_1G030580Melon (DHL92) v3.6.1cucmedB076
CsaV3_1G030580Watermelon (Charleston Gray)cucwcgB009
CsaV3_1G030580Watermelon (97103) v1cucwmB090
CsaV3_1G030580Wax gourdcucwgoB108