CsaV3_1G024270.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G024270.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	UBN2_3 domain-containing protein
Location	chr1 : 13888788 .. 13889838 (+)
Sequence length	606

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCAAGTTCAACCCTAAATCATGGAACCTCCTCTTCCTCAAGAAATTATTCAATAATAATCAACCCAGGGCATCATTTAACCGTGATTAAACTCACAGACAACAATTATCTCACTTGGAAATTGCAGATTCTGAACACCATATATGGACATTCCTTGGAAAATCACATCCTCAGTGACTCCAAACCAGAAAAGATGAGATTGACCAGTGTTGAAGTTGAAAGAAACACTAAAAATACAGAAAACGACTCCGAAAGAAACACAAACAGAGAAGATTTGATAGAAAATCCTAAGTACATCAGTTGGATGAGGCAAGATCGTTTAATCTGTTATTGGTTGATGGGTTCGATGAATGAAGACATAGTAACTCAAATGATTGGGTGTAATACAGCAAGAGAAATCTGGTTAACTCTTGAACAAACCTATTCCTCATCAAACACAGCCAAAATTATGCAACTAAAAGGACAATTGCAGAATCTGAAAAAGGGAAACCAATCAATTAGAGACTATACAGCAAAGGTGAAGAATCTTGTTTCAGCTTTAAAAGAGGTAGGTTGTCTTATCTCTCTACAAGAACACACAATATATATTCTTTCAGGATTAGGGTCAGAATATGATCCTATAGTCTCTGCTATATTTGCAAATCCAAATCGAAACCACTTCAAGAAATTATCTCACTTCTAATGGGTCATGAGAGTAGAATTGAAAGAAACTCATTAATAAATATTGATGGTACTCAACCTACTAGAAATCTTGTTTCTGAAAATGTTGATAAGAAACAAGGACAAAGCCAAGAGCAAAGAAATTAGGGGCAAAGTCAATGGAACCAGTGGCAAAATAGCAACGACGAGGACGAAATAATAATAATGGTGGAAATCGAGGAAGAGGGAAAAAACTTTTGAATAACTCCATACCACAATAACAAAATTGTGGAAAATTTGGCCACACAGCCATGAGATGTTATTCTTTATATGACCCAAACTTTCAAAAACAGTTCACTGGTAATACTCCATCTGGAATGCCAAGGTTCAATAACCAGAATTAG

mRNA sequence

ATGGCTTCTTCAAGTTCAACCCTAAATCATGGAACCTCCTCTTCCTCAAGAAATTATTCAATAATAATCAACCCAGGGCATCATTTAACCGTGATTAAACTCACAGACAACAATTATCTCACTTGGAAATTGCAGATTCTGAACACCATATATGGACATTCCTTGGAAAATCACATCCTCAGTGACTCCAAACCAGAAAAGATGAGATTGACCAGTGTTGAAGTTGAAAGAAACACTAAAAATACAGAAAACGACTCCGAAAGAAACACAAACAGAGAAGATTTGATAGAAAATCCTAAGTACATCAGTTGGATGAGGCAAGATCGTTTAATCTGTTATTGGTTGATGGGTTCGATGAATGAAGACATAGTAACTCAAATGATTGGGTGTAATACAGCAAGAGAAATCTGGTTAACTCTTGAACAAACCTATTCCTCATCAAACACAGCCAAAATTATGCAACTAAAAGGACAATTGCAGAATCTGAAAAAGGGAAACCAATCAATTAGAGACTATACAGCAAAGGTGAAGAATCTTGTTTCAGCTTTAAAAGAGTTCACTGGTAATACTCCATCTGGAATGCCAAGGTTCAATAACCAGAATTAG

Coding sequence (CDS)

ATGGCTTCTTCAAGTTCAACCCTAAATCATGGAACCTCCTCTTCCTCAAGAAATTATTCAATAATAATCAACCCAGGGCATCATTTAACCGTGATTAAACTCACAGACAACAATTATCTCACTTGGAAATTGCAGATTCTGAACACCATATATGGACATTCCTTGGAAAATCACATCCTCAGTGACTCCAAACCAGAAAAGATGAGATTGACCAGTGTTGAAGTTGAAAGAAACACTAAAAATACAGAAAACGACTCCGAAAGAAACACAAACAGAGAAGATTTGATAGAAAATCCTAAGTACATCAGTTGGATGAGGCAAGATCGTTTAATCTGTTATTGGTTGATGGGTTCGATGAATGAAGACATAGTAACTCAAATGATTGGGTGTAATACAGCAAGAGAAATCTGGTTAACTCTTGAACAAACCTATTCCTCATCAAACACAGCCAAAATTATGCAACTAAAAGGACAATTGCAGAATCTGAAAAAGGGAAACCAATCAATTAGAGACTATACAGCAAAGGTGAAGAATCTTGTTTCAGCTTTAAAAGAGTTCACTGGTAATACTCCATCTGGAATGCCAAGGTTCAATAACCAGAATTAG

Protein sequence

MASSSSTLNHGTSSSSRNYSIIINPGHHLTVIKLTDNNYLTWKLQILNTIYGHSLENHILSDSKPEKMRLTSVEVERNTKNTENDSERNTNREDLIENPKYISWMRQDRLICYWLMGSMNEDIVTQMIGCNTAREIWLTLEQTYSSSNTAKIMQLKGQLQNLKKGNQSIRDYTAKVKNLVSALKEFTGNTPSGMPRFNNQN

Homology

[Close]

BLAST of CsaV3_1G024270.1 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 73/181 (40.33%), Postives = 114/181 (62.98%), Query Frame = 0


Query: 3   SSSSTLNHGTSSSSRNYSIIINPGHHLTVIKLTDNNYLTWKLQILNTIYGHSLENHILSD 62
           +S S++ +  ++     S  INPG  +++++L D+N L WK QI   + G+ LE++I  D
Sbjct: 2   ASLSSIRNSDAARIIQASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYI--D 61

Query: 63  SKPEKMRLTSVEVERNTKNTENDSERNTNREDLIENPKYISWMRQDRLICYWLMGSMNED 122
           S  +    T  +  + T++  + S        L +NP Y  W++QD+LI  WL+GSMNED
Sbjct: 62  SNED----TPAQFVQTTEDESSSS-------SLQQNPAYFEWIKQDKLISAWLLGSMNED 121

Query: 123 IVTQMIGCNTAREIWLTLEQTYSSSNTAKIMQLKGQLQNLKKGNQSIRDYTAKVKNLVSA 182
           I++QM+ C +AREIW  LE  ++S   A++MQLK +L+N KKGN S++DY  K+KNLV +
Sbjct: 122 ILSQMLDCKSAREIWTVLECMFASRTLARVMQLKLKLENFKKGNLSLKDYFLKIKNLVDS 169

Query: 183 L 184
           L
Sbjct: 182 L 169

[Close]

BLAST of CsaV3_1G024270.1 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 7.8e-22
Identity = 58/141 (41.13%), Postives = 90/141 (63.83%), Query Frame = 0


Query: 43  KLQILNTIYGHSLENHILSDSKPEKMRLTSVEVERNTKNTENDSERNTNREDLIENPKYI 102
           K Q+L  I GH LE +I SD +P           R  +N +  +   T +     NP+Y 
Sbjct: 19  KFQVLTAIQGHGLEQYIDSDIEPP---------SRFIQNGDGVTSSTTQQ----PNPEYF 78

Query: 103 SWMRQDRLICYWLMGSMNEDIVTQMIGCNTAREIWLTLEQTYSSSNTAKIMQLKGQLQNL 162
            W++QD+LI  WL+GSM+E+I++QM+ C   +EIW  LE T++S N A++MQLK +L+N+
Sbjct: 79  HWIKQDKLISLWLLGSMSEEILSQMLDCRMVKEIWTLLECTFASRNLARVMQLKSKLENM 138

Query: 163 KKGNQSIRDYTAKVKNLVSAL 184
           KKG+ ++++Y  K+KNLV +L
Sbjct: 139 KKGSMNLKNYFLKIKNLVDSL 146

[Close]

BLAST of CsaV3_1G024270.1 vs. NCBI nr
Match: OMO79651.1 (hypothetical protein CCACVL1_13538 [Corchorus capsularis])

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-19
Identity = 55/158 (34.81%), Postives = 91/158 (57.59%), Query Frame = 0


Query: 27  HHLTVIKLTDNNYLTWKLQILNTIYGHSLENHILSD-SKPEKMRLTSVEVERNTKNTEND 86
           +H   ++L  NN+L W+ Q+L  I GH+L   I    S P +  L          NT  D
Sbjct: 44  NHPVQVRLDRNNFLLWRSQLLPVIRGHNLVGFIDGTLSCPSQTIL----------NTSTD 103

Query: 87  SERNTNREDLIENPKYISWMRQDRLICYWLMGSMNEDIVTQMIGCNTAREIWLTLEQTYS 146
              ++    L++NP++ +W RQD+L+  W++ S+ E ++ Q++GC T+  +W +LE+ Y+
Sbjct: 104 GSASSETPSLVQNPQFAAWQRQDQLLLGWILSSLTEPVLAQVVGCTTSHSLWTSLEKLYA 163

Query: 147 SSNTAKIMQLKGQLQNLKKGNQSIRDYTAKVKNLVSAL 184
           + +  +IMQL+ +LQ  KK N SI DY  K+K +V  L
Sbjct: 164 NQSRNRIMQLRLELQTTKKKNLSISDYLQKLKTVVDNL 191

[Close]

BLAST of CsaV3_1G024270.1 vs. NCBI nr
Match: XP_010656394.1 (PREDICTED: uncharacterized protein LOC104880653 [Vitis vinifera])

HSP 1 Score: 104.4 bits (259), Expect = 4.7e-19
Identity = 55/172 (31.98%), Postives = 94/172 (54.65%), Query Frame = 0


Query: 13  SSSSRNYSIIINPGHHLTVIKLTDNNYLTWKLQILNTIYGHSLENHIL-SDSKPEKMRLT 72
           +++  +  ++I+P   L  ++L D+N+L WK QI N + G+ LE  +  ++  P KM   
Sbjct: 26  TTTDESLRMVISPLSQLITMRLEDDNFLMWKYQIENVVRGYGLEGFLFGTEQVPPKMVTD 85

Query: 73  SVEVERNTKNTENDSERNTNREDLIENPKYISWMRQDRLICYWLMGSMNEDIVTQMIGCN 132
            + V                   L+ NPK+  + RQD L+  WL+ S+    + Q++GC+
Sbjct: 86  KIGV-------------------LVPNPKFRDYQRQDHLLISWLLSSIGSAFLPQVVGCS 145

Query: 133 TAREIWLTLEQTYSSSNTAKIMQLKGQLQNLKKGNQSIRDYTAKVKNLVSAL 184
           +A E+W T+ Q ++S ++AK+M  K Q+Q LKK   ++RDY  K+KN    L
Sbjct: 146 SAFEVWNTISQNFNSQSSAKVMFYKSQMQMLKKDGLTMRDYLTKMKNYCDLL 178

[Close]

BLAST of CsaV3_1G024270.1 vs. NCBI nr
Match: CAN67819.1 (hypothetical protein VITISV_041315 [Vitis vinifera])

HSP 1 Score: 104.4 bits (259), Expect = 4.7e-19
Identity = 55/172 (31.98%), Postives = 94/172 (54.65%), Query Frame = 0


Query: 13  SSSSRNYSIIINPGHHLTVIKLTDNNYLTWKLQILNTIYGHSLENHIL-SDSKPEKMRLT 72
           +++  +  ++I+P   L  ++L D+N+L WK QI N + G+ LE  +  ++  P KM   
Sbjct: 229 TTTDESLRMVISPLSQLITMRLEDDNFLMWKYQIENAVRGYGLEGFLFGTEQVPPKMVTD 288

Query: 73  SVEVERNTKNTENDSERNTNREDLIENPKYISWMRQDRLICYWLMGSMNEDIVTQMIGCN 132
            + V                   L+ NPK+  + RQD L+  WL+ S+    + Q++GC+
Sbjct: 289 KIGV-------------------LVPNPKFRDYQRQDHLLISWLLSSIGSAFLPQVVGCS 348

Query: 133 TAREIWLTLEQTYSSSNTAKIMQLKGQLQNLKKGNQSIRDYTAKVKNLVSAL 184
           +A E+W T+ Q ++S ++AK+M  K Q+Q LKK   ++RDY  K+KN    L
Sbjct: 349 SAFEVWNTISQNFNSQSSAKVMFYKSQMQMLKKDGLTMRDYLTKMKNYCDLL 381

[Close]

BLAST of CsaV3_1G024270.1 vs. TAIR10
Match: AT1G21280.1 (Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-08
Identity = 25/89 (28.09%), Postives = 48/89 (53.93%), Query Frame = 0


Query: 98  NPKYISWMRQDRLICYWLMGSMNEDIVTQMIGCNTAREIWLTLEQTYSSSNTAKIMQLKG 157
           +P Y  W + + ++ YWLM SM + ++  ++   TA ++W  L + +      KI QL+ 
Sbjct: 73  SPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRR 132

Query: 158 QLQNLKKGNQSIRDYTAKVKNLVSALKEF 187
           +L  L++G  S+ +Y  K+  +   L E+
Sbjct: 133 RLATLRQGGDSVEEYFGKLSKVWMELSEY 161

[Close]

BLAST of CsaV3_1G024270.1 vs. TAIR10
Match: AT5G48050.1 (Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 51.6 bits (122), Expect = 6.6e-07
Identity = 24/82 (29.27%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 104 WMRQDRLICYWLMGSMNEDIVTQMI--GCNTAREIWLTLEQTYSSSNTAKIMQLKGQLQN 163
           W  +D L+  W+ G++ + ++  +I  GC TAR++WL+LE  +  +  A+ +Q + +L+ 
Sbjct: 67  WKERDGLVKMWIYGTITDSLLDTIIKVGC-TARDLWLSLENLFRDNKEARALQFENELRT 126

Query: 164 LKKGNQSIRDYTAKVKNLVSAL 184
               + S+ +Y  K+K+L   L
Sbjct: 127 TTIDDLSVHEYCQKLKSLSDLL 147

[Close]

BLAST of CsaV3_1G024270.1 vs. TrEMBL
Match: tr|A0A1R3IAV5|A0A1R3IAV5_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13538 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.1e-19
Identity = 55/158 (34.81%), Postives = 91/158 (57.59%), Query Frame = 0


Query: 27  HHLTVIKLTDNNYLTWKLQILNTIYGHSLENHILSD-SKPEKMRLTSVEVERNTKNTEND 86
           +H   ++L  NN+L W+ Q+L  I GH+L   I    S P +  L          NT  D
Sbjct: 44  NHPVQVRLDRNNFLLWRSQLLPVIRGHNLVGFIDGTLSCPSQTIL----------NTSTD 103

Query: 87  SERNTNREDLIENPKYISWMRQDRLICYWLMGSMNEDIVTQMIGCNTAREIWLTLEQTYS 146
              ++    L++NP++ +W RQD+L+  W++ S+ E ++ Q++GC T+  +W +LE+ Y+
Sbjct: 104 GSASSETPSLVQNPQFAAWQRQDQLLLGWILSSLTEPVLAQVVGCTTSHSLWTSLEKLYA 163

Query: 147 SSNTAKIMQLKGQLQNLKKGNQSIRDYTAKVKNLVSAL 184
           + +  +IMQL+ +LQ  KK N SI DY  K+K +V  L
Sbjct: 164 NQSRNRIMQLRLELQTTKKKNLSISDYLQKLKTVVDNL 191

[Close]

BLAST of CsaV3_1G024270.1 vs. TrEMBL
Match: tr|A5BDX8|A5BDX8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_041315 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.1e-19
Identity = 55/172 (31.98%), Postives = 94/172 (54.65%), Query Frame = 0


Query: 13  SSSSRNYSIIINPGHHLTVIKLTDNNYLTWKLQILNTIYGHSLENHIL-SDSKPEKMRLT 72
           +++  +  ++I+P   L  ++L D+N+L WK QI N + G+ LE  +  ++  P KM   
Sbjct: 229 TTTDESLRMVISPLSQLITMRLEDDNFLMWKYQIENAVRGYGLEGFLFGTEQVPPKMVTD 288

Query: 73  SVEVERNTKNTENDSERNTNREDLIENPKYISWMRQDRLICYWLMGSMNEDIVTQMIGCN 132
            + V                   L+ NPK+  + RQD L+  WL+ S+    + Q++GC+
Sbjct: 289 KIGV-------------------LVPNPKFRDYQRQDHLLISWLLSSIGSAFLPQVVGCS 348

Query: 133 TAREIWLTLEQTYSSSNTAKIMQLKGQLQNLKKGNQSIRDYTAKVKNLVSAL 184
           +A E+W T+ Q ++S ++AK+M  K Q+Q LKK   ++RDY  K+KN    L
Sbjct: 349 SAFEVWNTISQNFNSQSSAKVMFYKSQMQMLKKDGLTMRDYLTKMKNYCDLL 381

[Close]

BLAST of CsaV3_1G024270.1 vs. TrEMBL
Match: tr|A0A2N9GA88|A0A2N9GA88_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24151 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.6e-18
Identity = 59/181 (32.60%), Postives = 101/181 (55.80%), Query Frame = 0


Query: 3   SSSSTLNHGTSSSSRNYSIIINPGHHLTVIKLTDNNYLTWKLQILNTIYGHSLENHILSD 62
           +SSST++   +SSS    +I    HH+  IKL  +NYL WK Q++  + G  L  ++   
Sbjct: 6   ASSSTISAPLNSSSPTPGLI--NLHHVITIKLNRDNYLLWKAQLIPYLRGQHLLGYVNGT 65

Query: 63  SKPEKMRLTSVEVERNTKNTENDSERNTNREDLIENPKYISWMRQDRLICYWLMGSMNED 122
           + P    ++       T               L+ N  Y  W++QDR+I   ++ S+++ 
Sbjct: 66  TPPPPQMISQTSESGET--------------SLLPNLAYAKWIQQDRIILSAIISSLSKS 125

Query: 123 IVTQMIGCNTAREIWLTLEQTYSSSNTAKIMQLKGQLQNLKKGNQSIRDYTAKVKNLVSA 182
           ++T ++G +TA ++WLTLE+ +SS + A+I+Q++ QL  LKKG+ SI +Y  K+K L+  
Sbjct: 126 LMTHIVGLSTAHDVWLTLERMFSSQSKARIIQIRYQLSTLKKGSLSITEYFQKLKQLIDT 170

Query: 183 L 184
           L
Sbjct: 186 L 170

[Close]

BLAST of CsaV3_1G024270.1 vs. TrEMBL
Match: tr|A0A2N9EN00|A0A2N9EN00_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8098 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.9e-18
Identity = 59/177 (33.33%), Postives = 98/177 (55.37%), Query Frame = 0


Query: 12  TSSSSRNYSIIINPG-----HHLTVIKLTDNNYLTWKLQILNTIYGHSLENHILSDSKPE 71
           TS+ S   S++  P      HH+  IKLT +NYL WK QI+  + G  L    L DS+P 
Sbjct: 3   TSTPSSTLSLLPTPTHLPVVHHMVTIKLTLDNYLLWKAQIVPYLRGQHLFG-FLDDSRPA 62

Query: 72  KMRLTSVEVERNTKNTENDSERNTNREDLIENPKYISWMRQDRLICYWLMGSMNEDIVTQ 131
                ++  +  +K              +  NP++ SW+ QD++I   L+ S++E+++  
Sbjct: 63  PPPTINITTDEISK--------------IQPNPEFQSWIIQDQMILSALISSLSENVLAY 122

Query: 132 MIGCNTAREIWLTLEQTYSSSNTAKIMQLKGQLQNLKKGNQSIRDYTAKVKNLVSAL 184
           ++ C T+RE+WLTLE+ +++ + A++M +  QL  LKKG+ SI DY  K   L++ L
Sbjct: 123 VVQCTTSREVWLTLERMFTAHSRARVMNIHYQLSTLKKGDSSIADYFHKFTGLIATL 164

[Close]

BLAST of CsaV3_1G024270.1 vs. TrEMBL
Match: tr|A0A2N9EVH3|A0A2N9EVH3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6707 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17
Identity = 58/177 (32.77%), Postives = 98/177 (55.37%), Query Frame = 0


Query: 12  TSSSSRNYSIIINPG-----HHLTVIKLTDNNYLTWKLQILNTIYGHSLENHILSDSKPE 71
           TS+ S   S++  P      HH+  IKLT +NYL WK QI+  + G  L    L DS+P 
Sbjct: 3   TSTPSSTLSLLPTPTHLPVVHHMVTIKLTRDNYLLWKAQIVPYLRGQHLFG-FLDDSRPA 62

Query: 72  KMRLTSVEVERNTKNTENDSERNTNREDLIENPKYISWMRQDRLICYWLMGSMNEDIVTQ 131
                ++  +  +K              +  NP++ SW+ QD++I   L+ S++E+++  
Sbjct: 63  PPPTINITTDEISK--------------IQPNPEFQSWIIQDQMILSALISSLSENVLAY 122

Query: 132 MIGCNTAREIWLTLEQTYSSSNTAKIMQLKGQLQNLKKGNQSIRDYTAKVKNLVSAL 184
           ++ C T+RE+WLTL++ +++ + A++M +  QL  LKKG+ SI DY  K   L++ L
Sbjct: 123 VVQCTTSREVWLTLKRMFTAHSRARVMNIHYQLSTLKKGDSSIADYFHKFTGLIATL 164

The following BLAST results are available for this feature:

BLAST of CsaV3_1G024270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154487.1	1.2e-27	40.33	uncharacterized protein LOC111021757 [Momordica charantia]	[more]
XP_022156747.1	7.8e-22	41.13	uncharacterized protein LOC111023586 [Momordica charantia]	[more]
OMO79651.1	1.6e-19	34.81	hypothetical protein CCACVL1_13538 [Corchorus capsularis]	[more]
XP_010656394.1	4.7e-19	31.98	PREDICTED: uncharacterized protein LOC104880653 [Vitis vinifera]	[more]
CAN67819.1	4.7e-19	31.98	hypothetical protein VITISV_041315 [Vitis vinifera]	[more]

BLAST of CsaV3_1G024270.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21280.1	2.0e-08	28.09	Retrotransposon gag protein (InterPro:IPR005162)	[more]
AT5G48050.1	6.6e-07	29.27	Retrotransposon gag protein (InterPro:IPR005162)	[more]

BLAST of CsaV3_1G024270.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G024270.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1R3IAV5\|A0A1R3IAV5_COCAP	1.1e-19	34.81	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13538 PE=4 ...	[more]
tr\|A5BDX8\|A5BDX8_VITVI	3.1e-19	31.98	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_041315 PE=4 SV=1	[more]
tr\|A0A2N9GA88\|A0A2N9GA88_FAGSY	2.6e-18	32.60	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24151 PE=4 SV=1	[more]
tr\|A0A2N9EN00\|A0A2N9EN00_FAGSY	5.9e-18	33.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8098 PE=4 SV=1	[more]
tr\|A0A2N9EVH3\|A0A2N9EVH3_FAGSY	1.0e-17	32.77	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6707 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_1G024270	CsaV3_1G024270	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G024270.1.exon1	CsaV3_1G024270.1.exon1	exon
CsaV3_1G024270.1.exon2	CsaV3_1G024270.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G024270.1.cds1	CsaV3_1G024270.1.cds1	CDS
CsaV3_1G024270.1.cds2	CsaV3_1G024270.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G024270.1	CsaV3_1G024270.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 104..185 e-value: 3.3E-14 score: 52.6
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 97..187