CsaV3_1G024270 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCTTCAAGTTCAACCCTAAATCATGGAACCTCCTCTTCCTCAAGAAATTATTCAATAATAATCAACCCAGGGCATCATTTAACCGTGATTAAACTCACAGACAACAATTATCTCACTTGGAAATTGCAGATTCTGAACACCATATATGGACATTCCTTGGAAAATCACATCCTCAGTGACTCCAAACCAGAAAAGATGAGATTGACCAGTGTTGAAGTTGAAAGAAACACTAAAAATACAGAAAACGACTCCGAAAGAAACACAAACAGAGAAGATTTGATAGAAAATCCTAAGTACATCAGTTGGATGAGGCAAGATCGTTTAATCTGTTATTGGTTGATGGGTTCGATGAATGAAGACATAGTAACTCAAATGATTGGGTGTAATACAGCAAGAGAAATCTGGTTAACTCTTGAACAAACCTATTCCTCATCAAACACAGCCAAAATTATGCAACTAAAAGGACAATTGCAGAATCTGAAAAAGGGAAACCAATCAATTAGAGACTATACAGCAAAGGTGAAGAATCTTGTTTCAGCTTTAAAAGAGGTAGGTTGTCTTATCTCTCTACAAGAACACACAATATATATTCTTTCAGGATTAGGGTCAGAATATGATCCTATAGTCTCTGCTATATTTGCAAATCCAAATCGAAACCACTTCAAGAAATTATCTCACTTCTAATGGGTCATGAGAGTAGAATTGAAAGAAACTCATTAATAAATATTGATGGTACTCAACCTACTAGAAATCTTGTTTCTGAAAATGTTGATAAGAAACAAGGACAAAGCCAAGAGCAAAGAAATTAGGGGCAAAGTCAATGGAACCAGTGGCAAAATAGCAACGACGAGGACGAAATAATAATAATGGTGGAAATCGAGGAAGAGGGAAAAAACTTTTGAATAACTCCATACCACAATAACAAAATTGTGGAAAATTTGGCCACACAGCCATGAGATGTTATTCTTTATATGACCCAAACTTTCAAAAACAGTTCACTGGTAATACTCCATCTGGAATGCCAAGGTTCAATAACCAGAATTAG ATGGCTTCTTCAAGTTCAACCCTAAATCATGGAACCTCCTCTTCCTCAAGAAATTATTCAATAATAATCAACCCAGGGCATCATTTAACCGTGATTAAACTCACAGACAACAATTATCTCACTTGGAAATTGCAGATTCTGAACACCATATATGGACATTCCTTGGAAAATCACATCCTCAGTGACTCCAAACCAGAAAAGATGAGATTGACCAGTGTTGAAGTTGAAAGAAACACTAAAAATACAGAAAACGACTCCGAAAGAAACACAAACAGAGAAGATTTGATAGAAAATCCTAAGTACATCAGTTGGATGAGGCAAGATCGTTTAATCTGTTATTGGTTGATGGGTTCGATGAATGAAGACATAGTAACTCAAATGATTGGGTGTAATACAGCAAGAGAAATCTGGTTAACTCTTGAACAAACCTATTCCTCATCAAACACAGCCAAAATTATGCAACTAAAAGGACAATTGCAGAATCTGAAAAAGGGAAACCAATCAATTAGAGACTATACAGCAAAGGTGAAGAATCTTGTTTCAGCTTTAAAAGAGTTCACTGGTAATACTCCATCTGGAATGCCAAGGTTCAATAACCAGAATTAG ATGGCTTCTTCAAGTTCAACCCTAAATCATGGAACCTCCTCTTCCTCAAGAAATTATTCAATAATAATCAACCCAGGGCATCATTTAACCGTGATTAAACTCACAGACAACAATTATCTCACTTGGAAATTGCAGATTCTGAACACCATATATGGACATTCCTTGGAAAATCACATCCTCAGTGACTCCAAACCAGAAAAGATGAGATTGACCAGTGTTGAAGTTGAAAGAAACACTAAAAATACAGAAAACGACTCCGAAAGAAACACAAACAGAGAAGATTTGATAGAAAATCCTAAGTACATCAGTTGGATGAGGCAAGATCGTTTAATCTGTTATTGGTTGATGGGTTCGATGAATGAAGACATAGTAACTCAAATGATTGGGTGTAATACAGCAAGAGAAATCTGGTTAACTCTTGAACAAACCTATTCCTCATCAAACACAGCCAAAATTATGCAACTAAAAGGACAATTGCAGAATCTGAAAAAGGGAAACCAATCAATTAGAGACTATACAGCAAAGGTGAAGAATCTTGTTTCAGCTTTAAAAGAGTTCACTGGTAATACTCCATCTGGAATGCCAAGGTTCAATAACCAGAATTAG MASSSSTLNHGTSSSSRNYSIIINPGHHLTVIKLTDNNYLTWKLQILNTIYGHSLENHILSDSKPEKMRLTSVEVERNTKNTENDSERNTNREDLIENPKYISWMRQDRLICYWLMGSMNEDIVTQMIGCNTAREIWLTLEQTYSSSNTAKIMQLKGQLQNLKKGNQSIRDYTAKVKNLVSALKEFTGNTPSGMPRFNNQN
BLAST of CsaV3_1G024270 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia]) HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27 Identity = 73/181 (40.33%), Postives = 114/181 (62.98%), Query Frame = 0
BLAST of CsaV3_1G024270 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia]) HSP 1 Score: 113.6 bits (283), Expect = 7.8e-22 Identity = 58/141 (41.13%), Postives = 90/141 (63.83%), Query Frame = 0
BLAST of CsaV3_1G024270 vs. NCBI nr
Match: OMO79651.1 (hypothetical protein CCACVL1_13538 [Corchorus capsularis]) HSP 1 Score: 105.9 bits (263), Expect = 1.6e-19 Identity = 55/158 (34.81%), Postives = 91/158 (57.59%), Query Frame = 0
BLAST of CsaV3_1G024270 vs. NCBI nr
Match: XP_010656394.1 (PREDICTED: uncharacterized protein LOC104880653 [Vitis vinifera]) HSP 1 Score: 104.4 bits (259), Expect = 4.7e-19 Identity = 55/172 (31.98%), Postives = 94/172 (54.65%), Query Frame = 0
BLAST of CsaV3_1G024270 vs. NCBI nr
Match: CAN67819.1 (hypothetical protein VITISV_041315 [Vitis vinifera]) HSP 1 Score: 104.4 bits (259), Expect = 4.7e-19 Identity = 55/172 (31.98%), Postives = 94/172 (54.65%), Query Frame = 0
BLAST of CsaV3_1G024270 vs. TAIR10
Match: AT1G21280.1 (Retrotransposon gag protein (InterPro:IPR005162)) HSP 1 Score: 56.6 bits (135), Expect = 2.0e-08 Identity = 25/89 (28.09%), Postives = 48/89 (53.93%), Query Frame = 0
BLAST of CsaV3_1G024270 vs. TAIR10
Match: AT5G48050.1 (Retrotransposon gag protein (InterPro:IPR005162)) HSP 1 Score: 51.6 bits (122), Expect = 6.6e-07 Identity = 24/82 (29.27%), Postives = 48/82 (58.54%), Query Frame = 0
BLAST of CsaV3_1G024270 vs. TrEMBL
Match: tr|A0A1R3IAV5|A0A1R3IAV5_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13538 PE=4 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 1.1e-19 Identity = 55/158 (34.81%), Postives = 91/158 (57.59%), Query Frame = 0
BLAST of CsaV3_1G024270 vs. TrEMBL
Match: tr|A5BDX8|A5BDX8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_041315 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 3.1e-19 Identity = 55/172 (31.98%), Postives = 94/172 (54.65%), Query Frame = 0
BLAST of CsaV3_1G024270 vs. TrEMBL
Match: tr|A0A2N9GA88|A0A2N9GA88_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24151 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 2.6e-18 Identity = 59/181 (32.60%), Postives = 101/181 (55.80%), Query Frame = 0
BLAST of CsaV3_1G024270 vs. TrEMBL
Match: tr|A0A2N9EN00|A0A2N9EN00_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8098 PE=4 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 5.9e-18 Identity = 59/177 (33.33%), Postives = 98/177 (55.37%), Query Frame = 0
BLAST of CsaV3_1G024270 vs. TrEMBL
Match: tr|A0A2N9EVH3|A0A2N9EVH3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6707 PE=4 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17 Identity = 58/177 (32.77%), Postives = 98/177 (55.37%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |