CsaV3_1G015040.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G015040.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionpentatricopeptide repeat-containing protein At2g13600-like isoform X3
Locationchr1 : 10671712 .. 10679001 (-)
Sequence length420
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGCTCTTCTTCCCTCCCACTCCCACTCCCACTTCGAGCAGGCCCTCACCTTTCTCCATTTATCTCTCTCGCTCAGATTCCCCTTTCTTCTTGCTTTCTCACTTTTTATCTCTCTTCTTCAACCTTCTTTCTTCCTTCCACTCCAATGGCTTCCGTTTCTGGAGATAAATTGTTTCCCGATCCGCCCACCTCCAACGACGCCGAGCTGCCTTCAATCTAATTTATTCCGCCGCCACGGTCACTCCCTCTCACATTCTCTTGCCTCTCCGAGCAACCAAAGTTTCTTATTCTGTTTTTTCTCTCGCTTCTCCGACCCTCCCAAGGTTTTATCTTTTCTTTTTGTTTGTATGTTTGTTTGTTCACTTTTTTGGGCTATGTTTTAGTTTATGACGCTTGTGTACCCTCTGTTTATAGTTTTGATTTGGTTCGAAGTGTTTGGAGTGAGGTGTAAGGCTGCTCTGGGCAAGATTACTTATTCCAAACACTTTTTCAGACTTCGAATAAGGTTCTAACCAAGTCCTAACTGTGATACCTTCATTTTATTAATCCAGGAGTTTTTTCTAATAATTTAGAAGTGCTTTATAATTCTACTTGATAGGTTTGTTTGTAGTGTAGCATGCTGCGTGTTTTTACGTACTTTTATGTTATTTTTGTGCTTTCGCCATCTGCCACCAATTTTGAGTTACTAGACAAGATTTTTGTGTATATATTATACGTGAATTAATGTATTTAAGTAAATTTCTTTGTTGGATGGGATTTGTTACAGGTAGTTAAAAGGTGATATGATGTATTAGTGATTCCGAGTGTTTTTACATTTCCTGGTTTGGCATAGGAAGGTTAATATCATACACAAATGCAGTGTTACACAAAAGTTGCATTATACACATCTCCCTCCAAAACAAGGTTATATCCCTCACTCCCTCCTGTCTACGGCTCTACCATAGACTGTAGTTCTATACTTTTATTCTTTCTCTACTTTTTGGGAAAGGCTAAATTACAGAAAACGTCTGTCCAAACTGTGTACTTTGTTTTAACAATGCCTCTAAACTTTTTAAAGTTCCTTTTGTTGGATTTACTCTTTCCTCTTTCCTCTTCTGGTGTATTCTTGCTCATATGTTTCTCAATCAAAACTCAATTTCTTATTAAAATAGTTGCTTTAACACGTATTAACTTCACATTATAATATTTTAGAACTTATCATATAAAAAATAGCAAATAAAAGATTAAACTTGACATAGAAGATACATCAAATGGTAATTAATCTTTGATGTTTATGACCAGTCAATATTTTTTTTAAACGTCAGTGTTATAAAATCTTAATCTTTTTTCGGTATCAAGTGAATTTTAACATGACCGTCGTCACTTTTTAAATTTAACTATCTCCGTTGGACAATCTAGTGCTAACTGTATTCATACAAATTCTAATTATTTCCAGGATCATCCTCAGGCTCTTCTGTGGCCTCCCACTTCAGGTTCATCATTGTCCAACTCAGGAACATTTCCTCTATGGAAAGCTCAATCTCTGTTACGACCCCTTTGCTCAGCTTTCTTACATGGAAGTCTCCCAAAATTTCTTTGAGGCTATGAAAGCTTGTACATATCTTGGATCAACATCCATTGCGTCAAAGCTTCATGGCCAACTTATTTCCACTGGTTTGTGCTCCTCTGTTTTCCTCCAAAACCATCTCTTACACATGTACTCAAAATGTGGGTTAATAAATGAGGCTCTTCAGATTTTTTTGGACACCAAGCAACGCAATGTCATTACTTGGAATACTATTCTTAATGGGTTGTTGGATTCTGGTCGTGTGAGGGACGCAGAGAAGATGTTTGATGAAATGCCCCTTAGAGATCCTGTTTCTTGGACTGCAATGATGTCGGGCTACTTCCGTAATGGTCAAGCTATGGATACTATTAAACTTTTTGTTTTGATGTTTCAGGATTCAGATTATGTTCCTGACTTGTTTTGTTTCTCTTGTGCAATGAAGGCTTGTAGTAGTGTTGGTTACATAAGGATTGCTCATCAGTTGCACGGTCTGTCAGAGAAATATGGCTTTGGAAACAACAAAGTCATCCAAAATTCTATCATCGATATGTATATTAAGTGCGATGCTATTTATGCTGCTGAGCAAGTGTTTCTAAGGATAGAAAAGCCAAGCTTATTTAGTTGGAATTGTATGATATATGGTTACTCTAAATTGCACGAGATGGGACGGGCAATTGACACTTTTAGACAAATGCCTGAACGAGATTCTGTCTCTTGGAACACAATTATTTCAGCATTTTCTCATCATGGTTTGCACATACAGAGCCTTGGTACGTTTGTTGAGATGTGGATTCAGGGTTGTCAACCAAATTCAATGACATATGCAAGCGTTCTTAGTGCATGTGCTAATATCTATGATTTTCAATGGGGTAAACATTTGCATGCTCGAATTGTCCGCGTCGAACCCTTTTTGGATGTTTTGGTAGGGAATGGATTGGTCGATATGTATGCAAAATGTGGACTTATTGATGCTTCAAAAAGGGTATTTAACACATTAAGGGAACACAATGTAGTAACATGGACGTCACTAATAAGTGGAATTGCACACTTTGGTAGTCAAGAAGAAGTTTATGACATTTTTTATCAAATGAGAAAAGATTGTGTTATTATGGATAATTTCATTCTTGCAACCATTCTTGGTGTATGTGAAGGGGAGACAAATATTTCAATTGGGGAGCAATTACATGGATTCACGGTGAAGACTGGGATGAATTCATCTGTGCCCGTAGGCAATGCTACTTTGTCAATGTATGCAAAATGTGGAGATTTTGAGAAGGCAAGTCTTGCTTTTGAAACGATGGCTGCTCACGATGTTATTTCATGGACAACAATGATCACTTCGTTCTCCCACAGTGGCAATGTAGAAAGGGCACGAGATTATTTCAATCGAATGCCGGAGCGTAATGTCATAAGTTGGAATGCAATGTTAGGTGCATATTGTCAGAACAGTTTTTGGGAAGAAGGTTTAAAATTGTACATTCTTATGCTAAGACAGGAAGTTAGGCCAGATTGGATCACCTTTGTTACCATGATCGGTGCTTGTTCTGAGTTAGCGATTTCAAAACTTGGAACACAAATTCTATCCCAAGCTGTTAAAGTAGGACTTGGTTCTGATGTTTCAGTTGTTAACAGTGCAATCACCTTATATTCTAGATGTGGTAGAATTGAAGAAGCGCAAAATCTTTTTGACTCAATACAAGAGAAAAACTTGATTTCTTGGAACTCAATAATGGGAGGATATGCTCAAAATGGTGAAGGCATGAAGGTGATTGAAATTTTTCAGAACATGTTGATGGCTGGTTGCAAACCTGATCATATCACGTATATAGCAATTCTCTCAGGTTGCAGCCACTCAGGTCTTGTAAAAGAAGCAAAATATCATTTTAACTCCATGACTAAAGATTTTGGCATCTCTGTAACTTTGGAGCATTTTGTGTGTATGGTAGATTTGTTTGGTCGAGCTGGGTTGCTAAAGCTGGCTTTGGATATGATTGATCAAATGCCATTTAAGCCGAATGCCAGTATATGGGGTGCTCTACTCAGTGCTTGTAGGATCCACCATGACACTGAAATGGCAGAGTTGGCAATGAAGAACTTGCTAGAATTGAACACTGAAAACTTTGAAAGTTACATTTTGCTTGCAAATACCTACTCTAGTTTTGGGAGGCTAGAATGCGTTTCTGAGGTGAGACAAGTGATGAAAGAGAAGAGAGTACAGAAAGATCCTGGCTGTAGTTGGATAGAGGTGTGCAACAGGGTCCATGTCTTTACTGCGAATGATACAAGTCATCCACAAGTCAAGGATATTTACAAGGCATTGGAAGACATTGTTAAGAAGATCAAAGATGATTATGGTTATTTTGATAGGTCGAGTTTTGTTGGGTATCGTAGTGAAGCTTGCTATTGCTTTTGGTTTGATCAACTTGCTTGATTGCATGCCAATCTATGTGATGAAAAACCTTCGAGTTTGCAATGATTGTCACCAGGTGATGAAATTGATTTCTCTTGTTGTCATGAGGAAATTTTTTATGCAAGATAGGTATCGATTTCATCACTTGGAGAAGGGAAGTTGCTCTTGTGGAGATTATTGGTAACTATAAAGTTAGAGTTTCGATTCTTTGATTTATGAAAGGAAAGATGCTTGGAAGAGAGATTGAAAAGAAATTGTGGATTGGGTTTGAAAGGGATAGACTTGTTGGAAAAGAATTCTTCTCTAAAGGTGGTAGTGGTAAACTATGTACTTAGCGTCGATTTTCCCCTCCGCATTCCATGGTCTTTTGTGTCCAACATTTGACTCAAAATTTAAATGGTACTTATAAGAATGACATTGTAGCTACTTTATTTTACAATGCATCGAAAACATATCGTGAATCAATGTTCTTAGAATTGTGGAGAAGTATTCTTGTATTCCCTAATGGTTTAGGAAAATATTTAAACGACGTTGGAATAACAGGATGCTCTCGTGTTCACTGCCCAGGAAGATAATATAACATGATGACAACAAATAAAGCACAGTCCATGAATTCTATACTGAAAGAACCTAGAGATTTGCTTATTGCTTATTGCTTCATTCCTTGAACATGTTCGAGCTTTGCTACAACGTTAGTTTTGGGAGCGTCGAGAAGAAAGCATTAGAGTGATGTCTACATTGACTAAATGGGAAAAGTTAGTTCTACAAAAGAAAAACAAGAACGAGCTTTGATAATGGTCAACCCAATTGACTGTTACCAATTCAATGTTAAAGATTTAGATAAAGAGGAGGTCGTAAATCTTCATACTCAAGAGTGCACTTGTAAGGAGTTTCAAGCTAAGCAACTACCATGCGCTCATGTCATTGCTGCAGCACGAGATCGCAATATAGATGTTTATAGTTTATGTGCTAACTATTACACTAATCCAGTCGGAAATCAGTCGGATTGGAAGACATGTGAAGAATTTGTACATATGACGCCTTACCTCCAAAAGTAGTCAAAAGTGCATTTTTATTTTGAAACTCCTACTGAAATTTTAATAGGTGCGAGATACATGAGAGATAAAACATTAAGGTGCGAGATAAAATATTAGGGCCTAATAAACTTGCATAGAACCATTCTAAACGCTTTAGAAATGGTAGCAATTTCATTTTGAAACTCTTACTGAAATTTTGGTAGGTGCGAGATAAAACATTAGGGTCTATTAAACTTGCTAAACATGCATAGAACCATCTAAACGGTTTAGGAAGAGTAGCATTTTCGTTTTGAAACTCTTAGTGAAATTTTTGTAGGTGCAAGATAAAACATTAAGACCTAATAAACTTGTTAAAGATGCATATAACCACTCTAAATGGTTTAGGAATGATAGGAATTTCACTTTGAAACTCCTAGTGAAATTTTGAAATGTGTGAGATAGGTGCAAGATGCATGTGAGATACACAAATTCATAAGAGGCTTACTAAATCAAATTGCTTGCACTTCTAAACCTATATTATAACACCTTTACTAAAATGATTAATAGTAGAAGGAAAGCCTATAGTTCTTATATTTAGGTTTAGGAACAAAACTCATTGAATCACTTGTTTTCACAGGACGAATCTTAAATAAACTGGTTGCACATGGGACGAATTAATATGGGGAACTGCTTGGTTGTACAAGATAACTAACCAATATAACAAAGATTACATTTTATTGAAACTATATCACTAAAAACATCAACAAAGTCAATAACAATAATACGACTTTTGATTATAATAACGTGATTAATTCTAAAAATGATAATGTCTTTTAACATTGTTCTACTAGTAGCTTTGCTGAATTTGGATGAAATACCAAATATGCTAGGATTAATGTCCTAAACTCCAAGGTGTATATATATATATATTTGTAGCATACGGAGGATGAAAATATGTGTGTCTGTAGGACATATGCATTTATTCTCTATAGGTATGTTACTTCCAATCATGAATTTCTTACTCACTAGAAGTTATGCATTTCTTCTCACAGTTTTACAAATAATTTTTATAAATCAAATGTGAACCAATCATGAGAAAATAAAACAATCATCATAACAAATTTCTTGCATTCCTTTAGTACATAATACTGTAGACATATGCATCAATTTGTTTGCTGAAAAATCTCAATGACATCAAAGAGAAGGGTCAGACAAATTTAATGGTATATCTAAAATGTGCTTAACAAAAATCTCATATCTCTACAGACAACTTAAACAACAATGATATATAAAAGAAAATAAAAACTCAGATTTTATTACTCACTTGACTTCAAAGAAGATGAATACGACATTGATAACGGAGAGAGGTGGAGAAGAAATGAAGAGGTCCGATGAAAACGACGCTGAAGTCGAAACTATTGGCTCGAAGAGTTCACTATAGTTTAAGTCGAAACTAAAAATAGAGAAGCGTTCACGGAAGTTGAAGTCGAAACTAAAAACAGAGAGGCGTGGAGAACAAATAGATCTAAGAGGCGTTCAATGAAGGCACCAAAGTTGAATGAAGTGGAAGTGAAGTTAAAGTGGAAACGGGAGAGTTCAGAAAGAACGAGATTTTTAGGTTAAAGAGAAGAAAAGGAGAGAAAATAAACAAAGGACAATTTGGACCTTTCACTCTCAATTTGTCCTAAAAATCTACTTTTTCAAAATCAATCTTAAAACTCATTTACTCCTTTCTTTTTTACCCTATTTTTGTCAATTTCCCAATCTTTTCTCCTTCCTTTGAATTCTTTCTCACTATCTGTTCATAATTTTTCCCTTCACAATTTTTGGTAAGTTTTTCTTTTTCATCTATATTTACCCTTCTCGCTTTCCTTCATCATTTCTCTCTGCTCACTCTACCATGTCCTCCATCTTCCAGGCCTTCCAAAAGACTTGCAGCTTCCTGGGCAATTCATAAATCAAAGTCCACATTCTCAACCGGGGATCTCAAAGGCATCTCCATCCAAGTCAGGAAAACACAACATAAAATATGTGTTTTTCAGTTTGATGAGGAATGAGAGGAAGCAATGACGAGCAAGAGAAAGAAACAAGACTAAATGGGAGCTGCATGCCTCATGCACATTCTTAAGACAAATATGTATTTCACATGTGGCTGACGTAATTAAGTGGAAAGTCCTTTTTTAACCTTGGACAAATTTTCACTAAGCCCCTAAAAGGAGTCATTTGTACAAATTGTCCAAGAAAACAACCTAAGATTACAGAAACTTTGCTGTGTTTTATTCTTTTGGATGAGCAAAATCACCTAGCATCAATCTCTC

mRNA sequence

ATGCAGTGTTACACAAAAGTTGCATTATACACATCTCCCTCCAAAACAAGGATCATCCTCAGGCTCTTCTGTGGCCTCCCACTTCAGGTTCATCATTGTCCAACTCAGGAACATTTCCTCTATGGAAAGCTCAATCTCTGTTACGACCCCTTTGCTCAGCTTTCTTACATGGAAGTCTCCCAAAATTTCTTTGAGGCTATGAAAGCTTGTACATATCTTGGATCAACATCCATTGCGTCAAAGCTTCATGGCCAACTTATTTCCACTGGCCTTCCAAAAGACTTGCAGCTTCCTGGGCAATTCATAAATCAAAGTCCACATTCTCAACCGGGGATCTCAAAGGCATCTCCATCCAAGTCAGGAAAACACAACATAAAATATGTGTTTTTCAGTTTGATGAGGAATGAGAGGAAGCAATGA

Coding sequence (CDS)

ATGCAGTGTTACACAAAAGTTGCATTATACACATCTCCCTCCAAAACAAGGATCATCCTCAGGCTCTTCTGTGGCCTCCCACTTCAGGTTCATCATTGTCCAACTCAGGAACATTTCCTCTATGGAAAGCTCAATCTCTGTTACGACCCCTTTGCTCAGCTTTCTTACATGGAAGTCTCCCAAAATTTCTTTGAGGCTATGAAAGCTTGTACATATCTTGGATCAACATCCATTGCGTCAAAGCTTCATGGCCAACTTATTTCCACTGGCCTTCCAAAAGACTTGCAGCTTCCTGGGCAATTCATAAATCAAAGTCCACATTCTCAACCGGGGATCTCAAAGGCATCTCCATCCAAGTCAGGAAAACACAACATAAAATATGTGTTTTTCAGTTTGATGAGGAATGAGAGGAAGCAATGA

Protein sequence

MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVSQNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFINQSPHSQPGISKASPSKSGKHNIKYVFFSLMRNERKQ
Homology
[Close]
BLAST of CsaV3_1G015040.1 vs. NCBI nr
Match: XP_011654499.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis sativus] >XP_011654503.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis sativus] >XP_011654510.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis sativus] >KGN64953.1 hypothetical protein Csa_1G166820 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 5.3e-46
Identity = 92/103 (89.32%), Postives = 95/103 (92.23%), Query Frame = 0 

Query: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60
           MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS
Sbjct: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60

Query: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFIN 104
           QNFFEAMKACTYLGSTSIASKLHGQLISTGL   + L    ++
Sbjct: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLCSSVFLQNHLLH 103

[Close]
BLAST of CsaV3_1G015040.1 vs. NCBI nr
Match: XP_008461109.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X3 [Cucumis melo] >XP_008461117.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X3 [Cucumis melo] >XP_016903059.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X3 [Cucumis melo])

HSP 1 Score: 167.9 bits (424), Expect = 2.4e-38
Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0 

Query: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60
           MQC TKVALYTSPSKTR+ILRLF GLPLQVHHCPTQEHFLY KLN+ YDPF+QLSYME+S
Sbjct: 1   MQCCTKVALYTSPSKTRLILRLFRGLPLQVHHCPTQEHFLYVKLNIGYDPFSQLSYMEIS 60

Query: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFIN 104
           QNFFEAMKACT +GS SIASKLHGQLISTGL   + L    ++
Sbjct: 61  QNFFEAMKACTLIGSRSIASKLHGQLISTGLCSSVFLQNHLLH 103

[Close]
BLAST of CsaV3_1G015040.1 vs. NCBI nr
Match: XP_016903050.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903053.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903054.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903055.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903057.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903063.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo])

HSP 1 Score: 167.9 bits (424), Expect = 2.4e-38
Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0 

Query: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60
           MQC TKVALYTSPSKTR+ILRLF GLPLQVHHCPTQEHFLY KLN+ YDPF+QLSYME+S
Sbjct: 50  MQCCTKVALYTSPSKTRLILRLFRGLPLQVHHCPTQEHFLYVKLNIGYDPFSQLSYMEIS 109

Query: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFIN 104
           QNFFEAMKACT +GS SIASKLHGQLISTGL   + L    ++
Sbjct: 110 QNFFEAMKACTLIGSRSIASKLHGQLISTGLCSSVFLQNHLLH 152

[Close]
BLAST of CsaV3_1G015040.1 vs. NCBI nr
Match: XP_008461066.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X2 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 2.0e-29
Identity = 66/87 (75.86%), Postives = 74/87 (85.06%), Query Frame = 0 

Query: 17  RIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVSQNFFEAMKACTYLGST 76
           R+ILRLF GLPLQVHHCPTQEHFLY KLN+ YDPF+QLSYME+SQNFFEAMKACT +GS 
Sbjct: 61  RLILRLFRGLPLQVHHCPTQEHFLYVKLNIGYDPFSQLSYMEISQNFFEAMKACTLIGSR 120

Query: 77  SIASKLHGQLISTGLPKDLQLPGQFIN 104
           SIASKLHGQLISTGL   + L    ++
Sbjct: 121 SIASKLHGQLISTGLCSSVFLQNHLLH 147

[Close]
BLAST of CsaV3_1G015040.1 vs. NCBI nr
Match: XP_023520697.1 (pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023520698.1 pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023520699.1 pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023520700.1 pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023520701.1 pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.9 bits (346), Expect = 2.7e-29
Identity = 71/103 (68.93%), Postives = 78/103 (75.73%), Query Frame = 0 

Query: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60
           M C TKVALYT   KTR  LRLF GLP QV    TQE FLYG+ NL +DPFAQLSYME+S
Sbjct: 1   MFCCTKVALYTCLPKTRFFLRLFHGLPPQVRRFSTQEQFLYGRFNLGHDPFAQLSYMELS 60

Query: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFIN 104
           Q FFEAMKACT+LGSTSIASKLHGQLISTGL   + L    ++
Sbjct: 61  QKFFEAMKACTFLGSTSIASKLHGQLISTGLCSSVFLQNHLLH 103

[Close]
BLAST of CsaV3_1G015040.1 vs. TrEMBL
Match: tr|A0A0A0LT54|A0A0A0LT54_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G166820 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 3.5e-46
Identity = 92/103 (89.32%), Postives = 95/103 (92.23%), Query Frame = 0 

Query: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60
           MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS
Sbjct: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60

Query: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFIN 104
           QNFFEAMKACTYLGSTSIASKLHGQLISTGL   + L    ++
Sbjct: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLCSSVFLQNHLLH 103

[Close]
BLAST of CsaV3_1G015040.1 vs. TrEMBL
Match: tr|A0A1S3CEF4|A0A1S3CEF4_CUCME (pentatricopeptide repeat-containing protein At2g13600-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103499765 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.6e-38
Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0 

Query: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60
           MQC TKVALYTSPSKTR+ILRLF GLPLQVHHCPTQEHFLY KLN+ YDPF+QLSYME+S
Sbjct: 1   MQCCTKVALYTSPSKTRLILRLFRGLPLQVHHCPTQEHFLYVKLNIGYDPFSQLSYMEIS 60

Query: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFIN 104
           QNFFEAMKACT +GS SIASKLHGQLISTGL   + L    ++
Sbjct: 61  QNFFEAMKACTLIGSRSIASKLHGQLISTGLCSSVFLQNHLLH 103

[Close]
BLAST of CsaV3_1G015040.1 vs. TrEMBL
Match: tr|A0A1S4E4B1|A0A1S4E4B1_CUCME (pentatricopeptide repeat-containing protein At2g13600-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499765 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.6e-38
Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0 

Query: 1   MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVS 60
           MQC TKVALYTSPSKTR+ILRLF GLPLQVHHCPTQEHFLY KLN+ YDPF+QLSYME+S
Sbjct: 50  MQCCTKVALYTSPSKTRLILRLFRGLPLQVHHCPTQEHFLYVKLNIGYDPFSQLSYMEIS 109

Query: 61  QNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFIN 104
           QNFFEAMKACT +GS SIASKLHGQLISTGL   + L    ++
Sbjct: 110 QNFFEAMKACTLIGSRSIASKLHGQLISTGLCSSVFLQNHLLH 152

[Close]
BLAST of CsaV3_1G015040.1 vs. TrEMBL
Match: tr|A0A1S3CDE3|A0A1S3CDE3_CUCME (pentatricopeptide repeat-containing protein At2g13600-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499765 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-29
Identity = 66/87 (75.86%), Postives = 74/87 (85.06%), Query Frame = 0 

Query: 17  RIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVSQNFFEAMKACTYLGST 76
           R+ILRLF GLPLQVHHCPTQEHFLY KLN+ YDPF+QLSYME+SQNFFEAMKACT +GS 
Sbjct: 61  RLILRLFRGLPLQVHHCPTQEHFLYVKLNIGYDPFSQLSYMEISQNFFEAMKACTLIGSR 120

Query: 77  SIASKLHGQLISTGLPKDLQLPGQFIN 104
           SIASKLHGQLISTGL   + L    ++
Sbjct: 121 SIASKLHGQLISTGLCSSVFLQNHLLH 147

[Close]
BLAST of CsaV3_1G015040.1 vs. TrEMBL
Match: tr|A0A2I4GWV5|A0A2I4GWV5_9ROSI (pentatricopeptide repeat-containing protein At2g13600-like OS=Juglans regia OX=51240 GN=LOC109011578 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.9e-13
Identity = 43/74 (58.11%), Postives = 50/74 (67.57%), Query Frame = 0 

Query: 30  VHHCPTQEHFLYGKLNLCYDPFAQLSYMEVSQNFFEAMKACTYLGSTSIASKLHGQLIST 89
           V H  +Q   L  KL L +DP AQLSYME+SQ F+EAMKACTYL ST IA KLH QLIST
Sbjct: 17  VRHVSSQHQNLSAKLVLYHDPSAQLSYMELSQKFYEAMKACTYLKSTPIAQKLHAQLIST 76

Query: 90  GLPKDLQLPGQFIN 104
           GL   + L    ++
Sbjct: 77  GLDSSIFLQNHLLH 90

The following BLAST results are available for this feature:
BLAST of CsaV3_1G015040.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011654499.15.3e-4689.32PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1... [more]
XP_008461109.12.4e-3878.64PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X3... [more]
XP_016903050.12.4e-3878.64PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1... [more]
XP_008461066.12.0e-2975.86PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X2... [more]
XP_023520697.12.7e-2968.93pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucurbita... [more]
BLAST of CsaV3_1G015040.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G015040.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G015040.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LT54|A0A0A0LT54_CUCSA3.5e-4689.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G166820 PE=4 SV=1[more]
tr|A0A1S3CEF4|A0A1S3CEF4_CUCME1.6e-3878.64pentatricopeptide repeat-containing protein At2g13600-like isoform X3 OS=Cucumis... [more]
tr|A0A1S4E4B1|A0A1S4E4B1_CUCME1.6e-3878.64pentatricopeptide repeat-containing protein At2g13600-like isoform X1 OS=Cucumis... [more]
tr|A0A1S3CDE3|A0A1S3CDE3_CUCME1.3e-2975.86pentatricopeptide repeat-containing protein At2g13600-like isoform X2 OS=Cucumis... [more]
tr|A0A2I4GWV5|A0A2I4GWV5_9ROSI3.9e-1358.11pentatricopeptide repeat-containing protein At2g13600-like OS=Juglans regia OX=5... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G015040CsaV3_1G015040gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G015040.1CsaV3_1G015040.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G015040.1.cds5CsaV3_1G015040.1.cds5CDS
CsaV3_1G015040.1.cds4CsaV3_1G015040.1.cds4CDS
CsaV3_1G015040.1.cds3CsaV3_1G015040.1.cds3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G015040.1.exon5CsaV3_1G015040.1.exon5exon
CsaV3_1G015040.1.exon4CsaV3_1G015040.1.exon4exon
CsaV3_1G015040.1.exon3CsaV3_1G015040.1.exon3exon
CsaV3_1G015040.1.exon2CsaV3_1G015040.1.exon2exon
CsaV3_1G015040.1.exon1CsaV3_1G015040.1.exon1exon