CsaV3_1G015040 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTGCTCTTCTTCCCTCCCACTCCCACTCCCACTTCGAGCAGGCCCTCACCTTTCTCCATTTATCTCTCTCGCTCAGATTCCCCTTTCTTCTTGCTTTCTCACTTTTTATCTCTCTTCTTCAACCTTCTTTCTTCCTTCCACTCCAATGGCTTCCGTTTCTGGAGATAAATTGTTTCCCGATCCGCCCACCTCCAACGACGCCGAGCTGCCTTCAATCTAATTTATTCCGCCGCCACGGTCACTCCCTCTCACATTCTCTTGCCTCTCCGAGCAACCAAAGTTTCTTATTCTGTTTTTTCTCTCGCTTCTCCGACCCTCCCAAGGTTTTATCTTTTCTTTTTGTTTGTATGTTTGTTTGTTCACTTTTTTGGGCTATGTTTTAGTTTATGACGCTTGTGTACCCTCTGTTTATAGTTTTGATTTGGTTCGAAGTGTTTGGAGTGAGGTGTAAGGCTGCTCTGGGCAAGATTACTTATTCCAAACACTTTTTCAGACTTCGAATAAGGTTCTAACCAAGTCCTAACTGTGATACCTTCATTTTATTAATCCAGGAGTTTTTTCTAATAATTTAGAAGTGCTTTATAATTCTACTTGATAGGTTTGTTTGTAGTGTAGCATGCTGCGTGTTTTTACGTACTTTTATGTTATTTTTGTGCTTTCGCCATCTGCCACCAATTTTGAGTTACTAGACAAGATTTTTGTGTATATATTATACGTGAATTAATGTATTTAAGTAAATTTCTTTGTTGGATGGGATTTGTTACAGGTAGTTAAAAGGTGATATGATGTATTAGTGATTCCGAGTGTTTTTACATTTCCTGGTTTGGCATAGGAAGGTTAATATCATACACAAATGCAGTGTTACACAAAAGTTGCATTATACACATCTCCCTCCAAAACAAGGTTATATCCCTCACTCCCTCCTGTCTACGGCTCTACCATAGACTGTAGTTCTATACTTTTATTCTTTCTCTACTTTTTGGGAAAGGCTAAATTACAGAAAACGTCTGTCCAAACTGTGTACTTTGTTTTAACAATGCCTCTAAACTTTTTAAAGTTCCTTTTGTTGGATTTACTCTTTCCTCTTTCCTCTTCTGGTGTATTCTTGCTCATATGTTTCTCAATCAAAACTCAATTTCTTATTAAAATAGTTGCTTTAACACGTATTAACTTCACATTATAATATTTTAGAACTTATCATATAAAAAATAGCAAATAAAAGATTAAACTTGACATAGAAGATACATCAAATGGTAATTAATCTTTGATGTTTATGACCAGTCAATATTTTTTTTAAACGTCAGTGTTATAAAATCTTAATCTTTTTTCGGTATCAAGTGAATTTTAACATGACCGTCGTCACTTTTTAAATTTAACTATCTCCGTTGGACAATCTAGTGCTAACTGTATTCATACAAATTCTAATTATTTCCAGGATCATCCTCAGGCTCTTCTGTGGCCTCCCACTTCAGGTTCATCATTGTCCAACTCAGGAACATTTCCTCTATGGAAAGCTCAATCTCTGTTACGACCCCTTTGCTCAGCTTTCTTACATGGAAGTCTCCCAAAATTTCTTTGAGGCTATGAAAGCTTGTACATATCTTGGATCAACATCCATTGCGTCAAAGCTTCATGGCCAACTTATTTCCACTGGTTTGTGCTCCTCTGTTTTCCTCCAAAACCATCTCTTACACATGTACTCAAAATGTGGGTTAATAAATGAGGCTCTTCAGATTTTTTTGGACACCAAGCAACGCAATGTCATTACTTGGAATACTATTCTTAATGGGTTGTTGGATTCTGGTCGTGTGAGGGACGCAGAGAAGATGTTTGATGAAATGCCCCTTAGAGATCCTGTTTCTTGGACTGCAATGATGTCGGGCTACTTCCGTAATGGTCAAGCTATGGATACTATTAAACTTTTTGTTTTGATGTTTCAGGATTCAGATTATGTTCCTGACTTGTTTTGTTTCTCTTGTGCAATGAAGGCTTGTAGTAGTGTTGGTTACATAAGGATTGCTCATCAGTTGCACGGTCTGTCAGAGAAATATGGCTTTGGAAACAACAAAGTCATCCAAAATTCTATCATCGATATGTATATTAAGTGCGATGCTATTTATGCTGCTGAGCAAGTGTTTCTAAGGATAGAAAAGCCAAGCTTATTTAGTTGGAATTGTATGATATATGGTTACTCTAAATTGCACGAGATGGGACGGGCAATTGACACTTTTAGACAAATGCCTGAACGAGATTCTGTCTCTTGGAACACAATTATTTCAGCATTTTCTCATCATGGTTTGCACATACAGAGCCTTGGTACGTTTGTTGAGATGTGGATTCAGGGTTGTCAACCAAATTCAATGACATATGCAAGCGTTCTTAGTGCATGTGCTAATATCTATGATTTTCAATGGGGTAAACATTTGCATGCTCGAATTGTCCGCGTCGAACCCTTTTTGGATGTTTTGGTAGGGAATGGATTGGTCGATATGTATGCAAAATGTGGACTTATTGATGCTTCAAAAAGGGTATTTAACACATTAAGGGAACACAATGTAGTAACATGGACGTCACTAATAAGTGGAATTGCACACTTTGGTAGTCAAGAAGAAGTTTATGACATTTTTTATCAAATGAGAAAAGATTGTGTTATTATGGATAATTTCATTCTTGCAACCATTCTTGGTGTATGTGAAGGGGAGACAAATATTTCAATTGGGGAGCAATTACATGGATTCACGGTGAAGACTGGGATGAATTCATCTGTGCCCGTAGGCAATGCTACTTTGTCAATGTATGCAAAATGTGGAGATTTTGAGAAGGCAAGTCTTGCTTTTGAAACGATGGCTGCTCACGATGTTATTTCATGGACAACAATGATCACTTCGTTCTCCCACAGTGGCAATGTAGAAAGGGCACGAGATTATTTCAATCGAATGCCGGAGCGTAATGTCATAAGTTGGAATGCAATGTTAGGTGCATATTGTCAGAACAGTTTTTGGGAAGAAGGTTTAAAATTGTACATTCTTATGCTAAGACAGGAAGTTAGGCCAGATTGGATCACCTTTGTTACCATGATCGGTGCTTGTTCTGAGTTAGCGATTTCAAAACTTGGAACACAAATTCTATCCCAAGCTGTTAAAGTAGGACTTGGTTCTGATGTTTCAGTTGTTAACAGTGCAATCACCTTATATTCTAGATGTGGTAGAATTGAAGAAGCGCAAAATCTTTTTGACTCAATACAAGAGAAAAACTTGATTTCTTGGAACTCAATAATGGGAGGATATGCTCAAAATGGTGAAGGCATGAAGGTGATTGAAATTTTTCAGAACATGTTGATGGCTGGTTGCAAACCTGATCATATCACGTATATAGCAATTCTCTCAGGTTGCAGCCACTCAGGTCTTGTAAAAGAAGCAAAATATCATTTTAACTCCATGACTAAAGATTTTGGCATCTCTGTAACTTTGGAGCATTTTGTGTGTATGGTAGATTTGTTTGGTCGAGCTGGGTTGCTAAAGCTGGCTTTGGATATGATTGATCAAATGCCATTTAAGCCGAATGCCAGTATATGGGGTGCTCTACTCAGTGCTTGTAGGATCCACCATGACACTGAAATGGCAGAGTTGGCAATGAAGAACTTGCTAGAATTGAACACTGAAAACTTTGAAAGTTACATTTTGCTTGCAAATACCTACTCTAGTTTTGGGAGGCTAGAATGCGTTTCTGAGGTGAGACAAGTGATGAAAGAGAAGAGAGTACAGAAAGATCCTGGCTGTAGTTGGATAGAGGTGTGCAACAGGGTCCATGTCTTTACTGCGAATGATACAAGTCATCCACAAGTCAAGGATATTTACAAGGCATTGGAAGACATTGTTAAGAAGATCAAAGATGATTATGGTTATTTTGATAGGTCGAGTTTTGTTGGGTATCGTAGTGAAGCTTGCTATTGCTTTTGGTTTGATCAACTTGCTTGATTGCATGCCAATCTATGTGATGAAAAACCTTCGAGTTTGCAATGATTGTCACCAGGTGATGAAATTGATTTCTCTTGTTGTCATGAGGAAATTTTTTATGCAAGATAGGTATCGATTTCATCACTTGGAGAAGGGAAGTTGCTCTTGTGGAGATTATTGGTAACTATAAAGTTAGAGTTTCGATTCTTTGATTTATGAAAGGAAAGATGCTTGGAAGAGAGATTGAAAAGAAATTGTGGATTGGGTTTGAAAGGGATAGACTTGTTGGAAAAGAATTCTTCTCTAAAGGTGGTAGTGGTAAACTATGTACTTAGCGTCGATTTTCCCCTCCGCATTCCATGGTCTTTTGTGTCCAACATTTGACTCAAAATTTAAATGGTACTTATAAGAATGACATTGTAGCTACTTTATTTTACAATGCATCGAAAACATATCGTGAATCAATGTTCTTAGAATTGTGGAGAAGTATTCTTGTATTCCCTAATGGTTTAGGAAAATATTTAAACGACGTTGGAATAACAGGATGCTCTCGTGTTCACTGCCCAGGAAGATAATATAACATGATGACAACAAATAAAGCACAGTCCATGAATTCTATACTGAAAGAACCTAGAGATTTGCTTATTGCTTATTGCTTCATTCCTTGAACATGTTCGAGCTTTGCTACAACGTTAGTTTTGGGAGCGTCGAGAAGAAAGCATTAGAGTGATGTCTACATTGACTAAATGGGAAAAGTTAGTTCTACAAAAGAAAAACAAGAACGAGCTTTGATAATGGTCAACCCAATTGACTGTTACCAATTCAATGTTAAAGATTTAGATAAAGAGGAGGTCGTAAATCTTCATACTCAAGAGTGCACTTGTAAGGAGTTTCAAGCTAAGCAACTACCATGCGCTCATGTCATTGCTGCAGCACGAGATCGCAATATAGATGTTTATAGTTTATGTGCTAACTATTACACTAATCCAGTCGGAAATCAGTCGGATTGGAAGACATGTGAAGAATTTGTACATATGACGCCTTACCTCCAAAAGTAGTCAAAAGTGCATTTTTATTTTGAAACTCCTACTGAAATTTTAATAGGTGCGAGATACATGAGAGATAAAACATTAAGGTGCGAGATAAAATATTAGGGCCTAATAAACTTGCATAGAACCATTCTAAACGCTTTAGAAATGGTAGCAATTTCATTTTGAAACTCTTACTGAAATTTTGGTAGGTGCGAGATAAAACATTAGGGTCTATTAAACTTGCTAAACATGCATAGAACCATCTAAACGGTTTAGGAAGAGTAGCATTTTCGTTTTGAAACTCTTAGTGAAATTTTTGTAGGTGCAAGATAAAACATTAAGACCTAATAAACTTGTTAAAGATGCATATAACCACTCTAAATGGTTTAGGAATGATAGGAATTTCACTTTGAAACTCCTAGTGAAATTTTGAAATGTGTGAGATAGGTGCAAGATGCATGTGAGATACACAAATTCATAAGAGGCTTACTAAATCAAATTGCTTGCACTTCTAAACCTATATTATAACACCTTTACTAAAATGATTAATAGTAGAAGGAAAGCCTATAGTTCTTATATTTAGGTTTAGGAACAAAACTCATTGAATCACTTGTTTTCACAGGACGAATCTTAAATAAACTGGTTGCACATGGGACGAATTAATATGGGGAACTGCTTGGTTGTACAAGATAACTAACCAATATAACAAAGATTACATTTTATTGAAACTATATCACTAAAAACATCAACAAAGTCAATAACAATAATACGACTTTTGATTATAATAACGTGATTAATTCTAAAAATGATAATGTCTTTTAACATTGTTCTACTAGTAGCTTTGCTGAATTTGGATGAAATACCAAATATGCTAGGATTAATGTCCTAAACTCCAAGGTGTATATATATATATATTTGTAGCATACGGAGGATGAAAATATGTGTGTCTGTAGGACATATGCATTTATTCTCTATAGGTATGTTACTTCCAATCATGAATTTCTTACTCACTAGAAGTTATGCATTTCTTCTCACAGTTTTACAAATAATTTTTATAAATCAAATGTGAACCAATCATGAGAAAATAAAACAATCATCATAACAAATTTCTTGCATTCCTTTAGTACATAATACTGTAGACATATGCATCAATTTGTTTGCTGAAAAATCTCAATGACATCAAAGAGAAGGGTCAGACAAATTTAATGGTATATCTAAAATGTGCTTAACAAAAATCTCATATCTCTACAGACAACTTAAACAACAATGATATATAAAAGAAAATAAAAACTCAGATTTTATTACTCACTTGACTTCAAAGAAGATGAATACGACATTGATAACGGAGAGAGGTGGAGAAGAAATGAAGAGGTCCGATGAAAACGACGCTGAAGTCGAAACTATTGGCTCGAAGAGTTCACTATAGTTTAAGTCGAAACTAAAAATAGAGAAGCGTTCACGGAAGTTGAAGTCGAAACTAAAAACAGAGAGGCGTGGAGAACAAATAGATCTAAGAGGCGTTCAATGAAGGCACCAAAGTTGAATGAAGTGGAAGTGAAGTTAAAGTGGAAACGGGAGAGTTCAGAAAGAACGAGATTTTTAGGTTAAAGAGAAGAAAAGGAGAGAAAATAAACAAAGGACAATTTGGACCTTTCACTCTCAATTTGTCCTAAAAATCTACTTTTTCAAAATCAATCTTAAAACTCATTTACTCCTTTCTTTTTTACCCTATTTTTGTCAATTTCCCAATCTTTTCTCCTTCCTTTGAATTCTTTCTCACTATCTGTTCATAATTTTTCCCTTCACAATTTTTGGTAAGTTTTTCTTTTTCATCTATATTTACCCTTCTCGCTTTCCTTCATCATTTCTCTCTGCTCACTCTACCATGTCCTCCATCTTCCAGGCCTTCCAAAAGACTTGCAGCTTCCTGGGCAATTCATAAATCAAAGTCCACATTCTCAACCGGGGATCTCAAAGGCATCTCCATCCAAGTCAGGAAAACACAACATAAAATATGTGTTTTTCAGTTTGATGAGGAATGAGAGGAAGCAATGACGAGCAAGAGAAAGAAACAAGACTAAATGGGAGCTGCATGCCTCATGCACATTCTTAAGACAAATATGTATTTCACATGTGGCTGACGTAATTAAGTGGAAAGTCCTTTTTTAACCTTGGACAAATTTTCACTAAGCCCCTAAAAGGAGTCATTTGTACAAATTGTCCAAGAAAACAACCTAAGATTACAGAAACTTTGCTGTGTTTTATTCTTTTGGATGAGCAAAATCACCTAGCATCAATCTCTC ATGCAGTGTTACACAAAAGTTGCATTATACACATCTCCCTCCAAAACAAGGATCATCCTCAGGCTCTTCTGTGGCCTCCCACTTCAGGTTCATCATTGTCCAACTCAGGAACATTTCCTCTATGGAAAGCTCAATCTCTGTTACGACCCCTTTGCTCAGCTTTCTTACATGGAAGTCTCCCAAAATTTCTTTGAGGCTATGAAAGCTTGTACATATCTTGGATCAACATCCATTGCGTCAAAGCTTCATGGCCAACTTATTTCCACTGGCCTTCCAAAAGACTTGCAGCTTCCTGGGCAATTCATAAATCAAAGTCCACATTCTCAACCGGGGATCTCAAAGGCATCTCCATCCAAGTCAGGAAAACACAACATAAAATATGTGTTTTTCAGTTTGATGAGGAATGAGAGGAAGCAATGA ATGCAGTGTTACACAAAAGTTGCATTATACACATCTCCCTCCAAAACAAGGATCATCCTCAGGCTCTTCTGTGGCCTCCCACTTCAGGTTCATCATTGTCCAACTCAGGAACATTTCCTCTATGGAAAGCTCAATCTCTGTTACGACCCCTTTGCTCAGCTTTCTTACATGGAAGTCTCCCAAAATTTCTTTGAGGCTATGAAAGCTTGTACATATCTTGGATCAACATCCATTGCGTCAAAGCTTCATGGCCAACTTATTTCCACTGGCCTTCCAAAAGACTTGCAGCTTCCTGGGCAATTCATAAATCAAAGTCCACATTCTCAACCGGGGATCTCAAAGGCATCTCCATCCAAGTCAGGAAAACACAACATAAAATATGTGTTTTTCAGTTTGATGAGGAATGAGAGGAAGCAATGA MQCYTKVALYTSPSKTRIILRLFCGLPLQVHHCPTQEHFLYGKLNLCYDPFAQLSYMEVSQNFFEAMKACTYLGSTSIASKLHGQLISTGLPKDLQLPGQFINQSPHSQPGISKASPSKSGKHNIKYVFFSLMRNERKQ
BLAST of CsaV3_1G015040 vs. NCBI nr
Match: XP_011654499.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis sativus] >XP_011654503.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis sativus] >XP_011654510.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis sativus] >KGN64953.1 hypothetical protein Csa_1G166820 [Cucumis sativus]) HSP 1 Score: 193.4 bits (490), Expect = 5.3e-46 Identity = 92/103 (89.32%), Postives = 95/103 (92.23%), Query Frame = 0
BLAST of CsaV3_1G015040 vs. NCBI nr
Match: XP_008461109.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X3 [Cucumis melo] >XP_008461117.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X3 [Cucumis melo] >XP_016903059.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X3 [Cucumis melo]) HSP 1 Score: 167.9 bits (424), Expect = 2.4e-38 Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0
BLAST of CsaV3_1G015040 vs. NCBI nr
Match: XP_016903050.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903053.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903054.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903055.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903057.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo] >XP_016903063.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucumis melo]) HSP 1 Score: 167.9 bits (424), Expect = 2.4e-38 Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0
BLAST of CsaV3_1G015040 vs. NCBI nr
Match: XP_008461066.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X2 [Cucumis melo]) HSP 1 Score: 138.3 bits (347), Expect = 2.0e-29 Identity = 66/87 (75.86%), Postives = 74/87 (85.06%), Query Frame = 0
BLAST of CsaV3_1G015040 vs. NCBI nr
Match: XP_023520697.1 (pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023520698.1 pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023520699.1 pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023520700.1 pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023520701.1 pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 137.9 bits (346), Expect = 2.7e-29 Identity = 71/103 (68.93%), Postives = 78/103 (75.73%), Query Frame = 0
BLAST of CsaV3_1G015040 vs. TrEMBL
Match: tr|A0A0A0LT54|A0A0A0LT54_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G166820 PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 3.5e-46 Identity = 92/103 (89.32%), Postives = 95/103 (92.23%), Query Frame = 0
BLAST of CsaV3_1G015040 vs. TrEMBL
Match: tr|A0A1S3CEF4|A0A1S3CEF4_CUCME (pentatricopeptide repeat-containing protein At2g13600-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103499765 PE=4 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 1.6e-38 Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0
BLAST of CsaV3_1G015040 vs. TrEMBL
Match: tr|A0A1S4E4B1|A0A1S4E4B1_CUCME (pentatricopeptide repeat-containing protein At2g13600-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499765 PE=4 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 1.6e-38 Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0
BLAST of CsaV3_1G015040 vs. TrEMBL
Match: tr|A0A1S3CDE3|A0A1S3CDE3_CUCME (pentatricopeptide repeat-containing protein At2g13600-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499765 PE=4 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 1.3e-29 Identity = 66/87 (75.86%), Postives = 74/87 (85.06%), Query Frame = 0
BLAST of CsaV3_1G015040 vs. TrEMBL
Match: tr|A0A2I4GWV5|A0A2I4GWV5_9ROSI (pentatricopeptide repeat-containing protein At2g13600-like OS=Juglans regia OX=51240 GN=LOC109011578 PE=4 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 3.9e-13 Identity = 43/74 (58.11%), Postives = 50/74 (67.57%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |