CsaV3_1G014230.1 (mRNA) Cucumber (Chinese Long) v3

NameCsaV3_1G014230.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionGlycosyltransferase
Locationchr1 : 9664290 .. 9664813 (+)
Sequence length318
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGACTACGTAGCCAAACAACTCGACATCTACCACACAATGTTTAGCGGCATTGGAGGTTTTGGCCTAGCTTGCTATGTCTCTCTTTGGCTCAACCTTCCTCACCGAAACGTCGTCGCCCACGACTTTCTCTGTCATATTTTAAAGAAGGTATCGTTCAGCTCCATAAGACCTAATTGCCGACTAACATCGCAGAAACAAATGGTGAAGATGGTTGGTCGATTTTTCAAAATCTGTCTATTTTAGAAACTTGCAGGTTGTTACTGTAGCTAAAATTGAGCAATAATTTAAAAATTTTGGTAGATTTCTACCTAATAATGTGTATTTATTAGGTCTCGGAGGCCCTCACTTTTGATTATTTGTTTGGATTGGCTCACATGGATGGTTCTTGATGCATTTGTTGGTGGTGCCATGAATAGGAAGGGAAAGAGGGAGAGGTAGTTACCAGTCAAATGCTCCTAGGGGACGACTTGGTTCTCATAGTTTGGGTCGATGAAGCAGCCAAGAATATGGAAGCAACTATG

mRNA sequence

TTGGACTACGTAGCCAAACAACTCGACATCTACCACACAATGTTTAGCGGCATTGGAGGTTTTGGCCTAGCTTGCTATGTCTCTCTTTGGCTCAACCTTCCTCACCGAAACGTCGTCGCCCACGACTTTCTCTGTCATATTTTAAAGAAGGTATCGTTCAGCTCCATAAGACCTAATTGCCGACTAACATCGCAGAAACAAATGGTGAAGATGGAAGGGAAAGAGGGAGAGGTAGTTACCAGTCAAATGCTCCTAGGGGACGACTTGGTTCTCATAGTTTGGGTCGATGAAGCAGCCAAGAATATGGAAGCAACTATG

Coding sequence (CDS)

TTGGACTACGTAGCCAAACAACTCGACATCTACCACACAATGTTTAGCGGCATTGGAGGTTTTGGCCTAGCTTGCTATGTCTCTCTTTGGCTCAACCTTCCTCACCGAAACGTCGTCGCCCACGACTTTCTCTGTCATATTTTAAAGAAGGTATCGTTCAGCTCCATAAGACCTAATTGCCGACTAACATCGCAGAAACAAATGGTGAAGATGGAAGGGAAAGAGGGAGAGGTAGTTACCAGTCAAATGCTCCTAGGGGACGACTTGGTTCTCATAGTTTGGGTCGATGAAGCAGCCAAGAATATGGAAGCAACTATG

Protein sequence

LDYVAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVSFSSIRPNCRLTSQKQMVKMEGKEGEVVTSQMLLGDDLVLIVWVDEAAKNMEATM
BLAST of CsaV3_1G014230.1 vs. NCBI nr
Match: KGN57089.1 (hypothetical protein Csa_3G152650 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 73/86 (84.88%), Postives = 75/86 (87.21%), Query Frame = 0

Query: 1   LDYVAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVSFSSIRPNC 60
           LDYVAKQLDIYHTMFS IGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVSFSSIRPNC
Sbjct: 50  LDYVAKQLDIYHTMFSDIGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVSFSSIRPNC 109

Query: 61  RLTSQKQMVKMEGKEGEVVTSQMLLG 87
           RLTS+KQMVKM     E +T   L G
Sbjct: 110 RLTSRKQMVKM---VSEALTFDYLFG 132

BLAST of CsaV3_1G014230.1 vs. NCBI nr
Match: XP_008449744.1 (PREDICTED: UDP-glycosyltransferase 92A1 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 1.0e-12
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 0

Query: 4   VAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDF 44
           VAKQL +YH +FSG GGFGLACYVSLWLNLPHRNVVAHDF
Sbjct: 136 VAKQLGVYHAIFSGTGGFGLACYVSLWLNLPHRNVVAHDF 175

BLAST of CsaV3_1G014230.1 vs. NCBI nr
Match: XP_004142228.1 (PREDICTED: UDP-glycosyltransferase 92A1 [Cucumis sativus] >KGN54153.1 hypothetical protein Csa_4G290200 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-11
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 0

Query: 4   VAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDF 44
           VAKQL +YH +FSG GGFGLACYVSLWLNLPHR VVAH F
Sbjct: 137 VAKQLGVYHAIFSGAGGFGLACYVSLWLNLPHRKVVAHHF 176

BLAST of CsaV3_1G014230.1 vs. NCBI nr
Match: KGN58292.1 (hypothetical protein Csa_3G608710 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 5.2e-09
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 18 IGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVS 53
          +GGFGLACYVSL LNLPHRNVVAHDFLC ILKKVS
Sbjct: 1  MGGFGLACYVSLGLNLPHRNVVAHDFLCQILKKVS 35

BLAST of CsaV3_1G014230.1 vs. NCBI nr
Match: AMQ26129.1 (UDP-glycosyltransferase 21 [Pueraria montana var. lobata])

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 0

Query: 4   VAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDF 44
           VAK+L ++H +FSG GG+GLACY SLWLNLPHR V +H+F
Sbjct: 133 VAKELGVFHVVFSGCGGYGLACYYSLWLNLPHRRVHSHEF 172

BLAST of CsaV3_1G014230.1 vs. TAIR10
Match: AT5G12890.1 (UDP-Glycosyltransferase superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.4e-07
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 0

Query: 4   VAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDFL 45
           V K++ +Y  +FS  G FGL CY S+WLNLPH+      FL
Sbjct: 141 VCKEVGVYSVIFSASGAFGLGCYRSIWLNLPHKETKQDQFL 181

BLAST of CsaV3_1G014230.1 vs. Swiss-Prot
Match: sp|Q9LXV0|U92A1_ARATH (UDP-glycosyltransferase 92A1 OS=Arabidopsis thaliana OX=3702 GN=UGT92A1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.2e-06
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 0

Query: 4   VAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDFL 45
           V K++ +Y  +FS  G FGL CY S+WLNLPH+      FL
Sbjct: 141 VCKEVGVYSVIFSASGAFGLGCYRSIWLNLPHKETKQDQFL 181

BLAST of CsaV3_1G014230.1 vs. TrEMBL
Match: tr|A0A0A0L7V2|A0A0A0L7V2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G152650 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 7.5e-33
Identity = 73/86 (84.88%), Postives = 75/86 (87.21%), Query Frame = 0

Query: 1   LDYVAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVSFSSIRPNC 60
           LDYVAKQLDIYHTMFS IGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVSFSSIRPNC
Sbjct: 50  LDYVAKQLDIYHTMFSDIGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVSFSSIRPNC 109

Query: 61  RLTSQKQMVKMEGKEGEVVTSQMLLG 87
           RLTS+KQMVKM     E +T   L G
Sbjct: 110 RLTSRKQMVKM---VSEALTFDYLFG 132

BLAST of CsaV3_1G014230.1 vs. TrEMBL
Match: tr|A0A1S3BMQ5|A0A1S3BMQ5_CUCME (Glycosyltransferase OS=Cucumis melo OX=3656 GN=LOC103491535 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.6e-13
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 0

Query: 4   VAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDF 44
           VAKQL +YH +FSG GGFGLACYVSLWLNLPHRNVVAHDF
Sbjct: 136 VAKQLGVYHAIFSGTGGFGLACYVSLWLNLPHRNVVAHDF 175

BLAST of CsaV3_1G014230.1 vs. TrEMBL
Match: tr|A0A0A0KX87|A0A0A0KX87_CUCSA (Glycosyltransferase OS=Cucumis sativus OX=3659 GN=Csa_4G290200 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-11
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 0

Query: 4   VAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDF 44
           VAKQL +YH +FSG GGFGLACYVSLWLNLPHR VVAH F
Sbjct: 137 VAKQLGVYHAIFSGAGGFGLACYVSLWLNLPHRKVVAHHF 176

BLAST of CsaV3_1G014230.1 vs. TrEMBL
Match: tr|A0A0A0LC60|A0A0A0LC60_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608710 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-09
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 18 IGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVS 53
          +GGFGLACYVSL LNLPHRNVVAHDFLC ILKKVS
Sbjct: 1  MGGFGLACYVSLGLNLPHRNVVAHDFLCQILKKVS 35

BLAST of CsaV3_1G014230.1 vs. TrEMBL
Match: tr|A0A172J2E2|A0A172J2E2_PUEML (Glycosyltransferase OS=Pueraria montana var. lobata OX=3893 GN=UGT21 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.6e-09
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 0

Query: 4   VAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDF 44
           VAK+L ++H +FSG GG+GLACY SLWLNLPHR V +H+F
Sbjct: 133 VAKELGVFHVVFSGCGGYGLACYYSLWLNLPHRRVHSHEF 172

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN57089.11.1e-3284.88hypothetical protein Csa_3G152650 [Cucumis sativus][more]
XP_008449744.11.0e-1287.50PREDICTED: UDP-glycosyltransferase 92A1 [Cucumis melo][more]
XP_004142228.13.2e-1182.50PREDICTED: UDP-glycosyltransferase 92A1 [Cucumis sativus] >KGN54153.1 hypothetic... [more]
KGN58292.15.2e-0991.43hypothetical protein Csa_3G608710 [Cucumis sativus][more]
AMQ26129.11.1e-0867.50UDP-glycosyltransferase 21 [Pueraria montana var. lobata][more]
Match NameE-valueIdentityDescription
AT5G12890.13.4e-0748.78UDP-Glycosyltransferase superfamily protein[more]
Match NameE-valueIdentityDescription
sp|Q9LXV0|U92A1_ARATH6.2e-0648.78UDP-glycosyltransferase 92A1 OS=Arabidopsis thaliana OX=3702 GN=UGT92A1 PE=2 SV=... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0L7V2|A0A0A0L7V2_CUCSA7.5e-3384.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G152650 PE=4 SV=1[more]
tr|A0A1S3BMQ5|A0A1S3BMQ5_CUCME6.6e-1387.50Glycosyltransferase OS=Cucumis melo OX=3656 GN=LOC103491535 PE=3 SV=1[more]
tr|A0A0A0KX87|A0A0A0KX87_CUCSA2.1e-1182.50Glycosyltransferase OS=Cucumis sativus OX=3659 GN=Csa_4G290200 PE=3 SV=1[more]
tr|A0A0A0LC60|A0A0A0LC60_CUCSA3.4e-0991.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608710 PE=4 SV=1[more]
tr|A0A172J2E2|A0A172J2E2_PUEML7.6e-0967.50Glycosyltransferase OS=Pueraria montana var. lobata OX=3893 GN=UGT21 PE=2 SV=1[more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G014230CsaV3_1G014230gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G014230.1.exon1CsaV3_1G014230.1.exon1exon
CsaV3_1G014230.1.exon2CsaV3_1G014230.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G014230.1.cds1CsaV3_1G014230.1.cds1CDS
CsaV3_1G014230.1.cds2CsaV3_1G014230.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G014230.1CsaV3_1G014230.1-proteinpolypeptide