CsaV3_1G014230 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G014230
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Glycosyltransferase
Location	chr1 : 9664290 .. 9664813 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGACTACGTAGCCAAACAACTCGACATCTACCACACAATGTTTAGCGGCATTGGAGGTTTTGGCCTAGCTTGCTATGTCTCTCTTTGGCTCAACCTTCCTCACCGAAACGTCGTCGCCCACGACTTTCTCTGTCATATTTTAAAGAAGGTATCGTTCAGCTCCATAAGACCTAATTGCCGACTAACATCGCAGAAACAAATGGTGAAGATGGTTGGTCGATTTTTCAAAATCTGTCTATTTTAGAAACTTGCAGGTTGTTACTGTAGCTAAAATTGAGCAATAATTTAAAAATTTTGGTAGATTTCTACCTAATAATGTGTATTTATTAGGTCTCGGAGGCCCTCACTTTTGATTATTTGTTTGGATTGGCTCACATGGATGGTTCTTGATGCATTTGTTGGTGGTGCCATGAATAGGAAGGGAAAGAGGGAGAGGTAGTTACCAGTCAAATGCTCCTAGGGGACGACTTGGTTCTCATAGTTTGGGTCGATGAAGCAGCCAAGAATATGGAAGCAACTATG

mRNA sequence

TTGGACTACGTAGCCAAACAACTCGACATCTACCACACAATGTTTAGCGGCATTGGAGGTTTTGGCCTAGCTTGCTATGTCTCTCTTTGGCTCAACCTTCCTCACCGAAACGTCGTCGCCCACGACTTTCTCTGTCATATTTTAAAGAAGGTATCGTTCAGCTCCATAAGACCTAATTGCCGACTAACATCGCAGAAACAAATGGTGAAGATGGAAGGGAAAGAGGGAGAGGTAGTTACCAGTCAAATGCTCCTAGGGGACGACTTGGTTCTCATAGTTTGGGTCGATGAAGCAGCCAAGAATATGGAAGCAACTATG

Coding sequence (CDS)

TTGGACTACGTAGCCAAACAACTCGACATCTACCACACAATGTTTAGCGGCATTGGAGGTTTTGGCCTAGCTTGCTATGTCTCTCTTTGGCTCAACCTTCCTCACCGAAACGTCGTCGCCCACGACTTTCTCTGTCATATTTTAAAGAAGGTATCGTTCAGCTCCATAAGACCTAATTGCCGACTAACATCGCAGAAACAAATGGTGAAGATGGAAGGGAAAGAGGGAGAGGTAGTTACCAGTCAAATGCTCCTAGGGGACGACTTGGTTCTCATAGTTTGGGTCGATGAAGCAGCCAAGAATATGGAAGCAACTATG

Protein sequence

LDYVAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVSFSSIRPNCRLTSQKQMVKMEGKEGEVVTSQMLLGDDLVLIVWVDEAAKNMEATM

Homology

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BLAST of CsaV3_1G014230 vs. NCBI nr
Match: KGN57089.1 (hypothetical protein Csa_3G152650 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 73/86 (84.88%), Postives = 75/86 (87.21%), Query Frame = 0


Query: 1   LDYVAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVSFSSIRPNC 60
           LDYVAKQLDIYHTMFS IGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVSFSSIRPNC
Sbjct: 50  LDYVAKQLDIYHTMFSDIGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVSFSSIRPNC 109

Query: 61  RLTSQKQMVKMEGKEGEVVTSQMLLG 87
           RLTS+KQMVKM     E +T   L G
Sbjct: 110 RLTSRKQMVKM---VSEALTFDYLFG 132

[Close]

BLAST of CsaV3_1G014230 vs. NCBI nr
Match: XP_008449744.1 (PREDICTED: UDP-glycosyltransferase 92A1 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 1.0e-12
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 4   VAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDF 44
           VAKQL +YH +FSG GGFGLACYVSLWLNLPHRNVVAHDF
Sbjct: 136 VAKQLGVYHAIFSGTGGFGLACYVSLWLNLPHRNVVAHDF 175

[Close]

BLAST of CsaV3_1G014230 vs. NCBI nr
Match: XP_004142228.1 (PREDICTED: UDP-glycosyltransferase 92A1 [Cucumis sativus] >KGN54153.1 hypothetical protein Csa_4G290200 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-11
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 4   VAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDF 44
           VAKQL +YH +FSG GGFGLACYVSLWLNLPHR VVAH F
Sbjct: 137 VAKQLGVYHAIFSGAGGFGLACYVSLWLNLPHRKVVAHHF 176

[Close]

BLAST of CsaV3_1G014230 vs. NCBI nr
Match: KGN58292.1 (hypothetical protein Csa_3G608710 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 5.2e-09
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 18 IGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVS 53
          +GGFGLACYVSL LNLPHRNVVAHDFLC ILKKVS
Sbjct: 1  MGGFGLACYVSLGLNLPHRNVVAHDFLCQILKKVS 35

[Close]

BLAST of CsaV3_1G014230 vs. NCBI nr
Match: AMQ26129.1 (UDP-glycosyltransferase 21 [Pueraria montana var. lobata])

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 4   VAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDF 44
           VAK+L ++H +FSG GG+GLACY SLWLNLPHR V +H+F
Sbjct: 133 VAKELGVFHVVFSGCGGYGLACYYSLWLNLPHRRVHSHEF 172

[Close]

BLAST of CsaV3_1G014230 vs. TAIR10
Match: AT5G12890.1 (UDP-Glycosyltransferase superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.4e-07
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 0


Query: 4   VAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDFL 45
           V K++ +Y  +FS  G FGL CY S+WLNLPH+      FL
Sbjct: 141 VCKEVGVYSVIFSASGAFGLGCYRSIWLNLPHKETKQDQFL 181

[Close]

BLAST of CsaV3_1G014230 vs. Swiss-Prot
Match: sp|Q9LXV0|U92A1_ARATH (UDP-glycosyltransferase 92A1 OS=Arabidopsis thaliana OX=3702 GN=UGT92A1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.2e-06
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 0


Query: 4   VAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDFL 45
           V K++ +Y  +FS  G FGL CY S+WLNLPH+      FL
Sbjct: 141 VCKEVGVYSVIFSASGAFGLGCYRSIWLNLPHKETKQDQFL 181

[Close]

BLAST of CsaV3_1G014230 vs. TrEMBL
Match: tr|A0A0A0L7V2|A0A0A0L7V2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G152650 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 7.5e-33
Identity = 73/86 (84.88%), Postives = 75/86 (87.21%), Query Frame = 0


Query: 1   LDYVAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVSFSSIRPNC 60
           LDYVAKQLDIYHTMFS IGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVSFSSIRPNC
Sbjct: 50  LDYVAKQLDIYHTMFSDIGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVSFSSIRPNC 109

Query: 61  RLTSQKQMVKMEGKEGEVVTSQMLLG 87
           RLTS+KQMVKM     E +T   L G
Sbjct: 110 RLTSRKQMVKM---VSEALTFDYLFG 132

[Close]

BLAST of CsaV3_1G014230 vs. TrEMBL
Match: tr|A0A1S3BMQ5|A0A1S3BMQ5_CUCME (Glycosyltransferase OS=Cucumis melo OX=3656 GN=LOC103491535 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.6e-13
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 4   VAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDF 44
           VAKQL +YH +FSG GGFGLACYVSLWLNLPHRNVVAHDF
Sbjct: 136 VAKQLGVYHAIFSGTGGFGLACYVSLWLNLPHRNVVAHDF 175

[Close]

BLAST of CsaV3_1G014230 vs. TrEMBL
Match: tr|A0A0A0KX87|A0A0A0KX87_CUCSA (Glycosyltransferase OS=Cucumis sativus OX=3659 GN=Csa_4G290200 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-11
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 4   VAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDF 44
           VAKQL +YH +FSG GGFGLACYVSLWLNLPHR VVAH F
Sbjct: 137 VAKQLGVYHAIFSGAGGFGLACYVSLWLNLPHRKVVAHHF 176

[Close]

BLAST of CsaV3_1G014230 vs. TrEMBL
Match: tr|A0A0A0LC60|A0A0A0LC60_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608710 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-09
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 18 IGGFGLACYVSLWLNLPHRNVVAHDFLCHILKKVS 53
          +GGFGLACYVSL LNLPHRNVVAHDFLC ILKKVS
Sbjct: 1  MGGFGLACYVSLGLNLPHRNVVAHDFLCQILKKVS 35

[Close]

BLAST of CsaV3_1G014230 vs. TrEMBL
Match: tr|A0A172J2E2|A0A172J2E2_PUEML (Glycosyltransferase OS=Pueraria montana var. lobata OX=3893 GN=UGT21 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.6e-09
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 4   VAKQLDIYHTMFSGIGGFGLACYVSLWLNLPHRNVVAHDF 44
           VAK+L ++H +FSG GG+GLACY SLWLNLPHR V +H+F
Sbjct: 133 VAKELGVFHVVFSGCGGYGLACYYSLWLNLPHRRVHSHEF 172

The following BLAST results are available for this feature:

BLAST of CsaV3_1G014230 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57089.1	1.1e-32	84.88	hypothetical protein Csa_3G152650 [Cucumis sativus]	[more]
XP_008449744.1	1.0e-12	87.50	PREDICTED: UDP-glycosyltransferase 92A1 [Cucumis melo]	[more]
XP_004142228.1	3.2e-11	82.50	PREDICTED: UDP-glycosyltransferase 92A1 [Cucumis sativus] >KGN54153.1 hypothetic...	[more]
KGN58292.1	5.2e-09	91.43	hypothetical protein Csa_3G608710 [Cucumis sativus]	[more]
AMQ26129.1	1.1e-08	67.50	UDP-glycosyltransferase 21 [Pueraria montana var. lobata]	[more]

BLAST of CsaV3_1G014230 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12890.1	3.4e-07	48.78	UDP-Glycosyltransferase superfamily protein	[more]

BLAST of CsaV3_1G014230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LXV0\|U92A1_ARATH	6.2e-06	48.78	UDP-glycosyltransferase 92A1 OS=Arabidopsis thaliana OX=3702 GN=UGT92A1 PE=2 SV=...	[more]

BLAST of CsaV3_1G014230 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7V2\|A0A0A0L7V2_CUCSA	7.5e-33	84.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G152650 PE=4 SV=1	[more]
tr\|A0A1S3BMQ5\|A0A1S3BMQ5_CUCME	6.6e-13	87.50	Glycosyltransferase OS=Cucumis melo OX=3656 GN=LOC103491535 PE=3 SV=1	[more]
tr\|A0A0A0KX87\|A0A0A0KX87_CUCSA	2.1e-11	82.50	Glycosyltransferase OS=Cucumis sativus OX=3659 GN=Csa_4G290200 PE=3 SV=1	[more]
tr\|A0A0A0LC60\|A0A0A0LC60_CUCSA	3.4e-09	91.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608710 PE=4 SV=1	[more]
tr\|A0A172J2E2\|A0A172J2E2_PUEML	7.6e-09	67.50	Glycosyltransferase OS=Pueraria montana var. lobata OX=3893 GN=UGT21 PE=2 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G014230.1	CsaV3_1G014230.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G014230	Silver-seed gourd	carcucB0192
CsaV3_1G014230	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G014230	Cucumber (Gy14) v1	cgycucB322
CsaV3_1G014230	Cucurbita maxima (Rimu)	cmacucB0188
CsaV3_1G014230	Cucurbita maxima (Rimu)	cmacucB0234
CsaV3_1G014230	Cucurbita maxima (Rimu)	cmacucB0694
CsaV3_1G014230	Cucurbita moschata (Rifu)	cmocucB0172
CsaV3_1G014230	Cucurbita moschata (Rifu)	cmocucB0221
CsaV3_1G014230	Cucurbita pepo (Zucchini)	cpecucB0635
CsaV3_1G014230	Cucurbita pepo (Zucchini)	cpecucB0996
CsaV3_1G014230	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G014230	Bottle gourd (USVL1VR-Ls)	cuclsiB048
CsaV3_1G014230	Melon (DHL92) v3.5.1	cucmeB010
CsaV3_1G014230	Melon (DHL92) v3.6.1	cucmedB009
CsaV3_1G014230	Watermelon (Charleston Gray)	cucwcgB016
CsaV3_1G014230	Watermelon (Charleston Gray)	cucwcgB030
CsaV3_1G014230	Watermelon (97103) v1	cucwmB054
CsaV3_1G014230	Watermelon (97103) v1	cucwmB060
CsaV3_1G014230	Watermelon (97103) v1	cucwmB074
CsaV3_1G014230	Watermelon (97103) v2	cucwmbB002
CsaV3_1G014230	Watermelon (97103) v2	cucwmbB025
CsaV3_1G014230	Wax gourd	cucwgoB051