CsaV3_1G010180.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G010180.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 6320396 .. 6321685 (-)
Sequence length347
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATTCCCAACTACCCACCGCCGTCGAAAGACGACAAACAACAACAGCTTTTGTAGAGCTCCATGCACGCTGCTGCTGTCTCCATTGGTATACCAAATTTCAACTTTCAATGTGAAAATTATTTGTCCTCACTTCTAAATTATCCCAACCATTTTTTATTTACGTTTAGTCATATAAGAAATCCACAGACGTACTAATTAGATTTAAAATATTTGTAAATATAACAACATTTTAAAAAGTTATAGATATAGTAAAATCTATCGACGATAATTATATAAGTTTATCGTTGATAGATCGTATTGCAAACATCAACCCATAACATCACAAGAGGTTATTAATAATAGAAGTCTATCATTTATAACATTTGCTATACTTACATATTTTCTAACTTTAATTACATACTTAATTATTATTCTAAAAATTGTTAATTACCTTTTTATGTTTGTTCTATGAACACTCTTAATACATAAAGAATCAACATATTTAAATATTTATTGTTTTCATCAATTTTCAAAAAATATATATTTATATATATTCTAACATGCATTCATCTCATATACTTAGTTTTAATGTCTTTTATATTATTTTTGTACAGTGAAGAGCATATAAAAATGCATCTAATCACTTTACTTACAAAATGAGAGTAATGAATAATTTTAAAATATCATAATATAGGCCTAAAATTCAAATCAATTTAGACTATAAACTAATATTTGTATGGATTAAAAACCCTAAAATTTTTAAAATATGTATAGATTTACATCTCAAACTATTTGAAAGGTTGAATAGCTATTGTTGTACTACACAAAATATGGAATATTCTAACCCCAAATATACTTGTGGTACGTAGCAAAAAGAATCTATGCCAAGGGGTTTTTTGATCTTCTTCTCAGTACAGGAGTTGCAGACGCCGGCGGTCACTTCCCGTCTCCATCTCCATCCAAGCGTGGATCCTCAGCCGCAAGCGACGCCTTTTTGCTCGGGTTCAGCCGCAAGTCAGTCGCGCCCTCTCCTCTATAGCATGCCACCTCCGCCAGCTGAGTGCCACGTAGGATTGACAAGTGTGCGGAGTCGTGTACCCTATTTTTTACATTATTTATATTAAAAAAAATCGGTTTATTTTGAAATGACATTGAAAATCGTGAAGTGGCAAATTTATATCATCTGTTTATATAAAAACTTCATTTTTGTAGGCAGTACTGAAGATACCCTAACTCAGCGGCCCCGCCTCACTGAAAGTGAAGTAGACAGTGGAAGAGTTTCAACACAACTCAACGTTGTAGGTAA

mRNA sequence

ATGGCATTCCCAACTACCCACCGCCGTCGAAAGACGACAAACAACAACAGCTTTTGTAGAGCTCCATGCACGCTGCTGCTGTCTCCATTGGAGTTGCAGACGCCGGCGGTCACTTCCCGTCTCCATCTCCATCCAAGCGTGGATCCTCAGCCGCAAGCGACGCCTTTTTGCTCGGGTTCAGCCGCAAGTCAGTCGCGCCCTCTCCTCTATAGCATGCCACCTCCGCCAGCTGAGTGCCACGTAGGATTGACAAGCAGTACTGAAGATACCCTAACTCAGCGGCCCCGCCTCACTGAAAGTGAAGTAGACAGTGGAAGAGTTTCAACACAACTCAACGTTGTAGGTAA

Coding sequence (CDS)

ATGGCATTCCCAACTACCCACCGCCGTCGAAAGACGACAAACAACAACAGCTTTTGTAGAGCTCCATGCACGCTGCTGCTGTCTCCATTGGAGTTGCAGACGCCGGCGGTCACTTCCCGTCTCCATCTCCATCCAAGCGTGGATCCTCAGCCGCAAGCGACGCCTTTTTGCTCGGGTTCAGCCGCAAGTCAGTCGCGCCCTCTCCTCTATAGCATGCCACCTCCGCCAGCTGAGTGCCACGTAGGATTGACAAGCAGTACTGAAGATACCCTAACTCAGCGGCCCCGCCTCACTGAAAGTGAAGTAGACAGTGGAAGAGTTTCAACACAACTCAACGTTGTAGGTAA

Protein sequence

MAFPTTHRRRKTTNNNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGSAASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVGX
Homology
[Close]
BLAST of CsaV3_1G010180.1 vs. NCBI nr
Match: KGN64466.1 (hypothetical protein Csa_1G057020 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 5.8e-54
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MAFPTTHRRXXXXXXNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGS 60
           MAFPTTHRRXXXXXXNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGS
Sbjct: 1   MAFPTTHRRXXXXXXNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGS 60

Query: 61  AASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG 116
           AASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG
Sbjct: 61  AASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG 115

[Close]
BLAST of CsaV3_1G010180.1 vs. TrEMBL
Match: tr|A0A0A0LWV8|A0A0A0LWV8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G057020 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.8e-54
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MAFPTTHRRXXXXXXNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGS 60
           MAFPTTHRRXXXXXXNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGS
Sbjct: 1   MAFPTTHRRXXXXXXNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGS 60

Query: 61  AASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG 116
           AASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG
Sbjct: 61  AASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG 115

The following BLAST results are available for this feature:
BLAST of CsaV3_1G010180.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64466.15.8e-54100.00hypothetical protein Csa_1G057020 [Cucumis sativus][more]
BLAST of CsaV3_1G010180.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010180.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010180.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWV8|A0A0A0LWV8_CUCSA3.8e-54100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G057020 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G010180CsaV3_1G010180gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G010180.1CsaV3_1G010180.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G010180.1.cds3CsaV3_1G010180.1.cds3CDS
CsaV3_1G010180.1.cds2CsaV3_1G010180.1.cds2CDS
CsaV3_1G010180.1.cds1CsaV3_1G010180.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G010180.1.exon3CsaV3_1G010180.1.exon3exon
CsaV3_1G010180.1.exon2CsaV3_1G010180.1.exon2exon
CsaV3_1G010180.1.exon1CsaV3_1G010180.1.exon1exon


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..108