CsaV3_1G010180 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G010180
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 6320396 .. 6321685 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATTCCCAACTACCCACCGCCGTCGAAAGACGACAAACAACAACAGCTTTTGTAGAGCTCCATGCACGCTGCTGCTGTCTCCATTGGTATACCAAATTTCAACTTTCAATGTGAAAATTATTTGTCCTCACTTCTAAATTATCCCAACCATTTTTTATTTACGTTTAGTCATATAAGAAATCCACAGACGTACTAATTAGATTTAAAATATTTGTAAATATAACAACATTTTAAAAAGTTATAGATATAGTAAAATCTATCGACGATAATTATATAAGTTTATCGTTGATAGATCGTATTGCAAACATCAACCCATAACATCACAAGAGGTTATTAATAATAGAAGTCTATCATTTATAACATTTGCTATACTTACATATTTTCTAACTTTAATTACATACTTAATTATTATTCTAAAAATTGTTAATTACCTTTTTATGTTTGTTCTATGAACACTCTTAATACATAAAGAATCAACATATTTAAATATTTATTGTTTTCATCAATTTTCAAAAAATATATATTTATATATATTCTAACATGCATTCATCTCATATACTTAGTTTTAATGTCTTTTATATTATTTTTGTACAGTGAAGAGCATATAAAAATGCATCTAATCACTTTACTTACAAAATGAGAGTAATGAATAATTTTAAAATATCATAATATAGGCCTAAAATTCAAATCAATTTAGACTATAAACTAATATTTGTATGGATTAAAAACCCTAAAATTTTTAAAATATGTATAGATTTACATCTCAAACTATTTGAAAGGTTGAATAGCTATTGTTGTACTACACAAAATATGGAATATTCTAACCCCAAATATACTTGTGGTACGTAGCAAAAAGAATCTATGCCAAGGGGTTTTTTGATCTTCTTCTCAGTACAGGAGTTGCAGACGCCGGCGGTCACTTCCCGTCTCCATCTCCATCCAAGCGTGGATCCTCAGCCGCAAGCGACGCCTTTTTGCTCGGGTTCAGCCGCAAGTCAGTCGCGCCCTCTCCTCTATAGCATGCCACCTCCGCCAGCTGAGTGCCACGTAGGATTGACAAGTGTGCGGAGTCGTGTACCCTATTTTTTACATTATTTATATTAAAAAAAATCGGTTTATTTTGAAATGACATTGAAAATCGTGAAGTGGCAAATTTATATCATCTGTTTATATAAAAACTTCATTTTTGTAGGCAGTACTGAAGATACCCTAACTCAGCGGCCCCGCCTCACTGAAAGTGAAGTAGACAGTGGAAGAGTTTCAACACAACTCAACGTTGTAGGTAA

mRNA sequence

ATGGCATTCCCAACTACCCACCGCCGTCGAAAGACGACAAACAACAACAGCTTTTGTAGAGCTCCATGCACGCTGCTGCTGTCTCCATTGGAGTTGCAGACGCCGGCGGTCACTTCCCGTCTCCATCTCCATCCAAGCGTGGATCCTCAGCCGCAAGCGACGCCTTTTTGCTCGGGTTCAGCCGCAAGTCAGTCGCGCCCTCTCCTCTATAGCATGCCACCTCCGCCAGCTGAGTGCCACGTAGGATTGACAAGCAGTACTGAAGATACCCTAACTCAGCGGCCCCGCCTCACTGAAAGTGAAGTAGACAGTGGAAGAGTTTCAACACAACTCAACGTTGTAGGTAA

Coding sequence (CDS)

ATGGCATTCCCAACTACCCACCGCCGTCGAAAGACGACAAACAACAACAGCTTTTGTAGAGCTCCATGCACGCTGCTGCTGTCTCCATTGGAGTTGCAGACGCCGGCGGTCACTTCCCGTCTCCATCTCCATCCAAGCGTGGATCCTCAGCCGCAAGCGACGCCTTTTTGCTCGGGTTCAGCCGCAAGTCAGTCGCGCCCTCTCCTCTATAGCATGCCACCTCCGCCAGCTGAGTGCCACGTAGGATTGACAAGCAGTACTGAAGATACCCTAACTCAGCGGCCCCGCCTCACTGAAAGTGAAGTAGACAGTGGAAGAGTTTCAACACAACTCAACGTTGTAGGTAA

Protein sequence

MAFPTTHRRRKTTNNNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGSAASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVGX
Homology
[Close]
BLAST of CsaV3_1G010180 vs. NCBI nr
Match: KGN64466.1 (hypothetical protein Csa_1G057020 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 5.8e-54
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MAFPTTHRRXXXXXXNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGS 60
           MAFPTTHRRXXXXXXNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGS
Sbjct: 1   MAFPTTHRRXXXXXXNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGS 60

Query: 61  AASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG 116
           AASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG
Sbjct: 61  AASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG 115

[Close]
BLAST of CsaV3_1G010180 vs. TrEMBL
Match: tr|A0A0A0LWV8|A0A0A0LWV8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G057020 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.8e-54
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MAFPTTHRRXXXXXXNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGS 60
           MAFPTTHRRXXXXXXNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGS
Sbjct: 1   MAFPTTHRRXXXXXXNSFCRAPCTLLLSPLELQTPAVTSRLHLHPSVDPQPQATPFCSGS 60

Query: 61  AASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG 116
           AASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG
Sbjct: 61  AASQSRPLLYSMPPPPAECHVGLTSSTEDTLTQRPRLTESEVDSGRVSTQLNVVG 115

The following BLAST results are available for this feature:
BLAST of CsaV3_1G010180 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64466.15.8e-54100.00hypothetical protein Csa_1G057020 [Cucumis sativus][more]
BLAST of CsaV3_1G010180 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010180 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWV8|A0A0A0LWV8_CUCSA3.8e-54100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G057020 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G010180.1CsaV3_1G010180.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..108

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G010180Silver-seed gourdcarcucB0529
CsaV3_1G010180Silver-seed gourdcarcucB1046
CsaV3_1G010180Cucumber (Gy14) v2cgybcucB002
CsaV3_1G010180Cucumber (Gy14) v1cgycucB196
CsaV3_1G010180Cucurbita maxima (Rimu)cmacucB0235
CsaV3_1G010180Cucurbita maxima (Rimu)cmacucB0474
CsaV3_1G010180Cucurbita moschata (Rifu)cmocucB0222
CsaV3_1G010180Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G010180Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G010180Cucurbita pepo (Zucchini)cpecucB0634
CsaV3_1G010180Wild cucumber (PI 183967)cpicucB001
CsaV3_1G010180Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G010180Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G010180Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G010180Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G010180Watermelon (97103) v1cucwmB013
CsaV3_1G010180Watermelon (97103) v2cucwmbB030
CsaV3_1G010180Wax gourdcucwgoB029