CsaV3_1G006900.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G006900.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionAlcohol dehydrogenase 7
Locationchr1 : 4385665 .. 4386101 (+)
Sequence length264
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACTTGCAGAGGCAGGGTTTCTGTTCCTTAATCTTAGAGCAACATAGCTTAGAAGGTGGAACTGAAGATGTTATTGCACTAACGCAGGAGCTTAGTTGCACTGGACTGCATGTCACTGCCATTGTGATCTCCACCGTCATAAACATCACTATGATACTTAGTGCAATCTGTGATGCCTTCATTTTCTTTCTTTTAAGGCAGTTGAACTTTAGGGGTGTGTGTGTGAAAGAGAAAGAGAGAAAGAGGTAGAGAGAGAGATAGAATTGAGAGATGTGGAATGTTGGGTGAAAATGGCTTAAGTTGCTTCTCAATTTATAGCCGCAAGGTGAAGGTCTTGAAAGCAAGAGATCATCATCAAGGGTCATGTTCACATTTCTGTTTTTGTAGGTTATCAAAGAAAAGGGACAGTAGCAGCGGAAGAGAAAATGTCCTGA

mRNA sequence

ATGTACTTGCAGAGGCAGGGTTTCTGTTCCTTAATCTTAGAGCAACATAGCTTAGAAGGTGGAACTGAAGATGTTATTGCACTAACGCAGGAGCTTAGTTGCACTGGACTGCATGTCACTGCCATTGTGATCTCCACCGTCATAAACATCACTATGATACTTAGTGCAATCTGTGATGCCTTCATTTTCTTTCTTTTAAGGCAGTTGAACTTTAGGGGTTATCAAAGAAAAGGGACAGTAGCAGCGGAAGAGAAAATGTCCTGA

Coding sequence (CDS)

ATGTACTTGCAGAGGCAGGGTTTCTGTTCCTTAATCTTAGAGCAACATAGCTTAGAAGGTGGAACTGAAGATGTTATTGCACTAACGCAGGAGCTTAGTTGCACTGGACTGCATGTCACTGCCATTGTGATCTCCACCGTCATAAACATCACTATGATACTTAGTGCAATCTGTGATGCCTTCATTTTCTTTCTTTTAAGGCAGTTGAACTTTAGGGGTTATCAAAGAAAAGGGACAGTAGCAGCGGAAGAGAAAATGTCCTGA

Protein sequence

MYLQRQGFCSLILEQHSLEGGTEDVIALTQELSCTGLHVTAIVISTVINITMILSAICDAFIFFLLRQLNFRGYQRKGTVAAEEKMS
Homology
[Close]
BLAST of CsaV3_1G006900.1 vs. NCBI nr
Match: AAF44336.1 (alcohol dehydrogenase 7 [Vitis vinifera])

HSP 1 Score: 65.9 bits (159), Expect = 8.1e-08
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 0 

Query: 2  YLQRQGFCSLILEQHSLEGGTEDVIALTQELSCTGLHVTAIVI--STVINITMILSAICD 61
          Y QR GFCSLIL QHSL+GG +DVIA TQELS  GLHVTA V+  S   + +   +AI D
Sbjct: 27 YWQRHGFCSLILLQHSLDGGVDDVIAPTQELSSVGLHVTATVMCASARSSTSTAQTAIYD 86

Query: 62 AFIFFL 66
           FIF L
Sbjct: 87 TFIFAL 92

[Close]
BLAST of CsaV3_1G006900.1 vs. TrEMBL
Match: tr|Q9M6B4|Q9M6B4_VITVI (Alcohol dehydrogenase 7 OS=Vitis vinifera OX=29760 GN=ADH7 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.3e-08
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 0 

Query: 2  YLQRQGFCSLILEQHSLEGGTEDVIALTQELSCTGLHVTAIVI--STVINITMILSAICD 61
          Y QR GFCSLIL QHSL+GG +DVIA TQELS  GLHVTA V+  S   + +   +AI D
Sbjct: 27 YWQRHGFCSLILLQHSLDGGVDDVIAPTQELSSVGLHVTATVMCASARSSTSTAQTAIYD 86

Query: 62 AFIFFL 66
           FIF L
Sbjct: 87 TFIFAL 92

The following BLAST results are available for this feature:
BLAST of CsaV3_1G006900.1 vs. NCBI nr
Match NameE-valueIdentityDescription
AAF44336.18.1e-0860.61alcohol dehydrogenase 7 [Vitis vinifera][more]
BLAST of CsaV3_1G006900.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006900.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006900.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|Q9M6B4|Q9M6B4_VITVI5.3e-0860.61Alcohol dehydrogenase 7 OS=Vitis vinifera OX=29760 GN=ADH7 PE=2 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G006900CsaV3_1G006900gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G006900.1.exon1CsaV3_1G006900.1.exon1exon
CsaV3_1G006900.1.exon2CsaV3_1G006900.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G006900.1.cds1CsaV3_1G006900.1.cds1CDS
CsaV3_1G006900.1.cds2CsaV3_1G006900.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G006900.1CsaV3_1G006900.1-proteinpolypeptide