CsaV3_1G004970.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G004970.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 3310642 .. 3311046 (-)
Sequence length405
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGAGGTTGGAGAAGAATGAGAAGGACATTAGGGAACTTAAAGATGTGACTCTGGAGTTGTCCAAAAGCATCGAAAGGCTAGCAGAGGAATTACGAGAAAGCAATGTTAGTTGCCGACGGGAAGAATCTGCTACGTCGGAGGGATCGGTGTTGAAAATGAAAGGAAAGATGGAAGAAGACTCGACCGCAGTTGAGAGAGGGACTTGGGAGCAAGCACTTAAATGGGCTGCTGATGCAAACTTGAGGCGGCTGAGAGGGGAGAAACTCCATGGACATGGGAGCATATGCAGAAATGGATTGTTGATTGCAAGGCAGAAAGAATACAGAGGAGTGCTAAAACAATACATCAAAAGCTTTCTGAAGGGCTGCAAAGAGATAAAGAAGGCTGCAAAGAGATAA

mRNA sequence

ATGGAGGAGAGGTTGGAGAAGAATGAGAAGGACATTAGGGAACTTAAAGATGTGACTCTGGAGTTGTCCAAAAGCATCGAAAGGCTAGCAGAGGAATTACGAGAAAGCAATGTTAGTTGCCGACGGGAAGAATCTGCTACGTCGGAGGGATCGGTGTTGAAAATGAAAGGAAAGATGGAAGAAGACTCGACCGCAGTTGAGAGAGGGACTTGGGAGCAAGCACTTAAATGGGCTGCTGATGCAAACTTGAGGCGGCTGAGAGGGGAGAAACTCCATGGACATGGGAGCATATGCAGAAATGGATTGTTGATTGCAAGGCAGAAAGAATACAGAGGAGTGCTAAAACAATACATCAAAAGCTTTCTGAAGGGCTGCAAAGAGATAAAGAAGGCTGCAAAGAGATAA

Coding sequence (CDS)

ATGGAGGAGAGGTTGGAGAAGAATGAGAAGGACATTAGGGAACTTAAAGATGTGACTCTGGAGTTGTCCAAAAGCATCGAAAGGCTAGCAGAGGAATTACGAGAAAGCAATGTTAGTTGCCGACGGGAAGAATCTGCTACGTCGGAGGGATCGGTGTTGAAAATGAAAGGAAAGATGGAAGAAGACTCGACCGCAGTTGAGAGAGGGACTTGGGAGCAAGCACTTAAATGGGCTGCTGATGCAAACTTGAGGCGGCTGAGAGGGGAGAAACTCCATGGACATGGGAGCATATGCAGAAATGGATTGTTGATTGCAAGGCAGAAAGAATACAGAGGAGTGCTAAAACAATACATCAAAAGCTTTCTGAAGGGCTGCAAAGAGATAAAGAAGGCTGCAAAGAGATAA

Protein sequence

MEERLEKNEKDIRELKDVTLELSKSIERLAEELRESNVSCRREESATSEGSVLKMKGKMEEDSTAVERGTWEQALKWAADANLRRLRGEKLHGHGSICRNGLLIARQKEYRGVLKQYIKSFLKGCKEIKKAAKR
Homology
[Close]
BLAST of CsaV3_1G004970.1 vs. NCBI nr
Match: XP_008456244.1 (PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 6.8e-06
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 1  MEERLEKNEKDIRELKDVTLELSKSIERLAEELRESNVSCRREESATSEGSVLKMKGKME 60
          +EERLE  EK++  LK++  E+ K++ERLAEE+RES    ++EES T +G V+K+KGKME
Sbjct: 6  VEERLEGTEKEVLGLKEMMREMKKTMERLAEEMRESQYYKKKEESGTFDGFVMKLKGKME 65

Query: 61 EDSTAVERGT 71
          E     E  T
Sbjct: 66 ELDVTAEVNT 75

[Close]
BLAST of CsaV3_1G004970.1 vs. NCBI nr
Match: XP_011654353.1 (PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 5.8e-05
Identity = 32/61 (52.46%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 1  MEERLEKNEKDIRELKDVTLELSKSIERLAEELRESNVSCRREESATSEGSVLKMKGKME 60
          +E+ ++  EK+I  LK++ LE+ K++ER+AE LRE++   RREES TS+GSV+K+KGK E
Sbjct: 6  IEDIVDGTEKEIMVLKEMLLEMKKAMERMAEVLRENHSYKRREESGTSDGSVMKLKGKAE 65

Query: 61 E 62
          E
Sbjct: 66 E 66

[Close]
BLAST of CsaV3_1G004970.1 vs. TrEMBL
Match: tr|A0A1S3C415|A0A1S3C415_CUCME (uncharacterized protein LOC103496243 OS=Cucumis melo OX=3656 GN=LOC103496243 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.5e-06
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 1  MEERLEKNEKDIRELKDVTLELSKSIERLAEELRESNVSCRREESATSEGSVLKMKGKME 60
          +EERLE  EK++  LK++  E+ K++ERLAEE+RES    ++EES T +G V+K+KGKME
Sbjct: 6  VEERLEGTEKEVLGLKEMMREMKKTMERLAEEMRESQYYKKKEESGTFDGFVMKLKGKME 65

Query: 61 EDSTAVERGT 71
          E     E  T
Sbjct: 66 ELDVTAEVNT 75

The following BLAST results are available for this feature:
BLAST of CsaV3_1G004970.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008456244.16.8e-0650.00PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo][more]
XP_011654353.15.8e-0552.46PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus][more]
BLAST of CsaV3_1G004970.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G004970.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G004970.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C415|A0A1S3C415_CUCME4.5e-0650.00uncharacterized protein LOC103496243 OS=Cucumis melo OX=3656 GN=LOC103496243 PE=... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G004970CsaV3_1G004970gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G004970.1.cds1CsaV3_1G004970.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G004970.1.exon1CsaV3_1G004970.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G004970.1CsaV3_1G004970.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..65