CsaV3_1G004970 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G004970
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 3310642 .. 3311046 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGAGGTTGGAGAAGAATGAGAAGGACATTAGGGAACTTAAAGATGTGACTCTGGAGTTGTCCAAAAGCATCGAAAGGCTAGCAGAGGAATTACGAGAAAGCAATGTTAGTTGCCGACGGGAAGAATCTGCTACGTCGGAGGGATCGGTGTTGAAAATGAAAGGAAAGATGGAAGAAGACTCGACCGCAGTTGAGAGAGGGACTTGGGAGCAAGCACTTAAATGGGCTGCTGATGCAAACTTGAGGCGGCTGAGAGGGGAGAAACTCCATGGACATGGGAGCATATGCAGAAATGGATTGTTGATTGCAAGGCAGAAAGAATACAGAGGAGTGCTAAAACAATACATCAAAAGCTTTCTGAAGGGCTGCAAAGAGATAAAGAAGGCTGCAAAGAGATAA

mRNA sequence

ATGGAGGAGAGGTTGGAGAAGAATGAGAAGGACATTAGGGAACTTAAAGATGTGACTCTGGAGTTGTCCAAAAGCATCGAAAGGCTAGCAGAGGAATTACGAGAAAGCAATGTTAGTTGCCGACGGGAAGAATCTGCTACGTCGGAGGGATCGGTGTTGAAAATGAAAGGAAAGATGGAAGAAGACTCGACCGCAGTTGAGAGAGGGACTTGGGAGCAAGCACTTAAATGGGCTGCTGATGCAAACTTGAGGCGGCTGAGAGGGGAGAAACTCCATGGACATGGGAGCATATGCAGAAATGGATTGTTGATTGCAAGGCAGAAAGAATACAGAGGAGTGCTAAAACAATACATCAAAAGCTTTCTGAAGGGCTGCAAAGAGATAAAGAAGGCTGCAAAGAGATAA

Coding sequence (CDS)

ATGGAGGAGAGGTTGGAGAAGAATGAGAAGGACATTAGGGAACTTAAAGATGTGACTCTGGAGTTGTCCAAAAGCATCGAAAGGCTAGCAGAGGAATTACGAGAAAGCAATGTTAGTTGCCGACGGGAAGAATCTGCTACGTCGGAGGGATCGGTGTTGAAAATGAAAGGAAAGATGGAAGAAGACTCGACCGCAGTTGAGAGAGGGACTTGGGAGCAAGCACTTAAATGGGCTGCTGATGCAAACTTGAGGCGGCTGAGAGGGGAGAAACTCCATGGACATGGGAGCATATGCAGAAATGGATTGTTGATTGCAAGGCAGAAAGAATACAGAGGAGTGCTAAAACAATACATCAAAAGCTTTCTGAAGGGCTGCAAAGAGATAAAGAAGGCTGCAAAGAGATAA

Protein sequence

MEERLEKNEKDIRELKDVTLELSKSIERLAEELRESNVSCRREESATSEGSVLKMKGKMEEDSTAVERGTWEQALKWAADANLRRLRGEKLHGHGSICRNGLLIARQKEYRGVLKQYIKSFLKGCKEIKKAAKR
Homology
[Close]
BLAST of CsaV3_1G004970 vs. NCBI nr
Match: XP_008456244.1 (PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 6.8e-06
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 1  MEERLEKNEKDIRELKDVTLELSKSIERLAEELRESNVSCRREESATSEGSVLKMKGKME 60
          +EERLE  EK++  LK++  E+ K++ERLAEE+RES    ++EES T +G V+K+KGKME
Sbjct: 6  VEERLEGTEKEVLGLKEMMREMKKTMERLAEEMRESQYYKKKEESGTFDGFVMKLKGKME 65

Query: 61 EDSTAVERGT 71
          E     E  T
Sbjct: 66 ELDVTAEVNT 75

[Close]
BLAST of CsaV3_1G004970 vs. NCBI nr
Match: XP_011654353.1 (PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 5.8e-05
Identity = 32/61 (52.46%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 1  MEERLEKNEKDIRELKDVTLELSKSIERLAEELRESNVSCRREESATSEGSVLKMKGKME 60
          +E+ ++  EK+I  LK++ LE+ K++ER+AE LRE++   RREES TS+GSV+K+KGK E
Sbjct: 6  IEDIVDGTEKEIMVLKEMLLEMKKAMERMAEVLRENHSYKRREESGTSDGSVMKLKGKAE 65

Query: 61 E 62
          E
Sbjct: 66 E 66

[Close]
BLAST of CsaV3_1G004970 vs. TrEMBL
Match: tr|A0A1S3C415|A0A1S3C415_CUCME (uncharacterized protein LOC103496243 OS=Cucumis melo OX=3656 GN=LOC103496243 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.5e-06
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 1  MEERLEKNEKDIRELKDVTLELSKSIERLAEELRESNVSCRREESATSEGSVLKMKGKME 60
          +EERLE  EK++  LK++  E+ K++ERLAEE+RES    ++EES T +G V+K+KGKME
Sbjct: 6  VEERLEGTEKEVLGLKEMMREMKKTMERLAEEMRESQYYKKKEESGTFDGFVMKLKGKME 65

Query: 61 EDSTAVERGT 71
          E     E  T
Sbjct: 66 ELDVTAEVNT 75

The following BLAST results are available for this feature:
BLAST of CsaV3_1G004970 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008456244.16.8e-0650.00PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo][more]
XP_011654353.15.8e-0552.46PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus][more]
BLAST of CsaV3_1G004970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G004970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G004970 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C415|A0A1S3C415_CUCME4.5e-0650.00uncharacterized protein LOC103496243 OS=Cucumis melo OX=3656 GN=LOC103496243 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G004970.1CsaV3_1G004970.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..65

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G004970Silver-seed gourdcarcucB0552
CsaV3_1G004970Silver-seed gourdcarcucB0555
CsaV3_1G004970Cucumber (Gy14) v2cgybcucB002
CsaV3_1G004970Cucumber (Gy14) v1cgycucB143
CsaV3_1G004970Cucurbita maxima (Rimu)cmacucB0247
CsaV3_1G004970Cucurbita maxima (Rimu)cmacucB0513
CsaV3_1G004970Cucurbita maxima (Rimu)cmacucB0519
CsaV3_1G004970Cucurbita moschata (Rifu)cmocucB0233
CsaV3_1G004970Cucurbita moschata (Rifu)cmocucB0501
CsaV3_1G004970Cucurbita moschata (Rifu)cmocucB0506
CsaV3_1G004970Cucurbita pepo (Zucchini)cpecucB0665
CsaV3_1G004970Wild cucumber (PI 183967)cpicucB001
CsaV3_1G004970Bottle gourd (USVL1VR-Ls)cuclsiB037
CsaV3_1G004970Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G004970Melon (DHL92) v3.5.1cucmeB018
CsaV3_1G004970Melon (DHL92) v3.6.1cucmedB016
CsaV3_1G004970Watermelon (Charleston Gray)cucwcgB061
CsaV3_1G004970Watermelon (Charleston Gray)cucwcgB063
CsaV3_1G004970Watermelon (97103) v1cucwmB068
CsaV3_1G004970Watermelon (97103) v1cucwmB070
CsaV3_1G004970Watermelon (97103) v2cucwmbB052
CsaV3_1G004970Watermelon (97103) v2cucwmbB054
CsaV3_1G004970Wax gourdcucwgoB036
CsaV3_1G004970Wax gourdcucwgoB059