CsaV3_1G003040.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G003040.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 1896977 .. 1899183 (-)
Sequence length234
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGTATAGGATCCAGGTAGATTGTAAAGCATCAGTAGTTAGGAGCAACTTTTTTTTTTTATATTTATTCCATCTGATTCATTTATTAATCTAATGTGATAGTGCTAACATATTTTGTAACGTTTAGGGTGAACAAAAGACGAGCTTAGTTGGGATTAAACGATGGTATATATTTTAAATATGTGGTCATACATTGATATATATATATCACTTAAGTTATACTTAATAAATTCACAATTAAATGGGAAGATAGGTGGCATACCGAATTTAAATGTACACTCCATTTAATCGTTGCAGTGGACGCAGACAGATACAACATCAGACGTTGTATAATTTCTTCTTTACATTCAATGATCTAACATTATTTGGCACACATCCACAGTATGTATTCTCACAATGAAATGTTCAACGTCAATATTATTTATAAAGTTACATGAACCATACAAAATAGCATATACCAATCTCATTAGGAATACACACTTAGTCAGAAGACAGAGTTAAATTTTCTAATTTTAAATATTTTTGTAAAGTTTTTCATATTCTTTTACTTATTCAACTATCTATCAAAATCAACATTGATTCTATGGTTATATCAAAATTGAATCTCATATCATTCTATCAATATTCTAATCGTCGTAGACTTTAAAATATAAACCTATTTTTGAAGGTTAAGGTAGAAATGACACACAAAGCCTGAAACAAAAGAGAACAACACTTGTTTGGTGATACGAATAGTATAACCTTAATGAGAATTTAACAAAACCAAACCGGATTATCTTTATCCAAGAATAAACGCTTCGAATTCGGTAAATACCAAAGGTCGCAACCTACGATGAAAAAAAATCTCAAGGAGGCGGGGCGGGGCGGCTCGCGGGAGTTCTAACTTCTACTTCAAAATTCTCTCAGTTCCTCATTCAAATCCTTTCTTCTCTTCTTCTTTTGCAAATTCGAACCAAATTCTTTGCTCTTATTTCAGATCTTGACCACTTTCAATTTCTCAAGGTTTCTTTTTCATCTCTAGTCTCCGTTTTTCCTGATTTTTTTTTTTGCTTCAATTGTCGCATTGATTATTTGCTGTTTTTTTCTTTTGTGTTCTCGGCTTCTTCTTCCTGTTCTTAATGTTTCTTCTCGTCTTTACGGTTGGGAATGAAGTGTAAAATTAGAGGCTGAGCTACACAACATATGGTGGAGCAGAGACATGGTTGTTTAAGAATTCGGTTGTCTTGATATTGGAGGAAAGAGATTCCTTTTAGTTTGTTTAGTCTTCTGTTGGGTCTGGAAAACAGTTGATAATACTGTGAATAGGGGATATGCACAAGGGCATTGAGTCATTAGGAGTTCAGAACATAAATTCATAATATCTGGTGCACTTCGGTGTACCTTATCCTTTAGGGACCTACTTTGAATTTTACAGATGCCTCGAGTGCATTATATTTTTATTGTTTGCATGTCAGTGTACCTATACGTGACTTTAGGATTTTTATTTTGCTAACAATAAGTTCCATTTTAGATGTTCGATTATGTAATGGAAAAATTGGAAAGGGTTGTTTTAACTTACTTTTTTTTTAATCTTTTGTTGTCTTAGATTGTAATGTTATTTCACCGTATATTAGTAATTTGAGAAGTTCCATTTTTCTTTAGGAAAATTTATTTGTTCTATGTTTACCTCTGTTCCCGATTGAAATTATATATGGGCTGATGGGAGTTATCTGTTGGTTTGTTGTGATTAGACTCGGGCAGGGAAAACTTATTTTTGGTATTTGGGAAATGTTTTTACACTAATGGAATGGTTTGCTTTTTATTACAAATGTAATTCTTTTGGTGTTTAGGGTTCTCCCCTGTTTACAATTATTAATGAAACGTTTATTTTATCAAAAAAAAGAAGAAGATATAATTCATTCATAATATGAAATTAATTGGCTTGGAGCCGCACAAACCCAAAGGAGATGAAAGATGACTATCATGCCCATTAAATTTTGAGAGCTTATAACTATTGGATCCATTTTTATATACAATATACTTTTGACCATGTATCACATGTTTTGAAATCTCTCTTGTTTTCATTGATATAGAATTATTTCAATTTTCAATTGAAAAACTGGTGGAATTATGTCTCATGGAGTTCATTTGGTGTCTTTCCATATGTTTTTTTTTTTCTGCTGCCATTGAAGTTTACAACGAAGTCAAAGGATGGAATTCTGGAATAA

mRNA sequence

GGGTATAGGATCCAGGTCGCAACCTACGATGAAAAAAAATCTCAAGGAGGCGGGGCGGGGCGGCTCGCGGGAGTTCTAACTTCTACTTCAAAATTCTCTCAGTTCCTCATTCAAATCCTTTCTTCTCTTCTTCTTTTGCAAATTCGAACCAAATTCTTTGCTCTTATTTCAGATCTTGACCACTTTCAATTTCTCAAGTTTACAACGAAGTCAAAGGATGGAATTCTGGAATAA

Coding sequence (CDS)

GGGTATAGGATCCAGGTCGCAACCTACGATGAAAAAAAATCTCAAGGAGGCGGGGCGGGGCGGCTCGCGGGAGTTCTAACTTCTACTTCAAAATTCTCTCAGTTCCTCATTCAAATCCTTTCTTCTCTTCTTCTTTTGCAAATTCGAACCAAATTCTTTGCTCTTATTTCAGATCTTGACCACTTTCAATTTCTCAAGTTTACAACGAAGTCAAAGGATGGAATTCTGGAATAA

Protein sequence

GYRIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHFQFLKFTTKSKDGILE
Homology
[Close]
BLAST of CsaV3_1G003040.1 vs. NCBI nr
Match: KGN63738.1 (hypothetical protein Csa_1G014350 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 7.9e-31
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 3  RIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHF 62
          RIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHF
Sbjct: 4  RIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHF 63

Query: 63 QFLKFTTKSKDGILE 78
          QFLKFTTKSKDGILE
Sbjct: 64 QFLKFTTKSKDGILE 78

[Close]
BLAST of CsaV3_1G003040.1 vs. TrEMBL
Match: tr|A0A0A0LPK0|A0A0A0LPK0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014350 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.2e-31
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 3  RIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHF 62
          RIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHF
Sbjct: 4  RIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHF 63

Query: 63 QFLKFTTKSKDGILE 78
          QFLKFTTKSKDGILE
Sbjct: 64 QFLKFTTKSKDGILE 78

The following BLAST results are available for this feature:
BLAST of CsaV3_1G003040.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63738.17.9e-31100.00hypothetical protein Csa_1G014350 [Cucumis sativus][more]
BLAST of CsaV3_1G003040.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G003040.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G003040.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LPK0|A0A0A0LPK0_CUCSA5.2e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014350 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G003040CsaV3_1G003040gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G003040.1CsaV3_1G003040.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G003040.1.cds3CsaV3_1G003040.1.cds3CDS
CsaV3_1G003040.1.cds2CsaV3_1G003040.1.cds2CDS
CsaV3_1G003040.1.cds1CsaV3_1G003040.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G003040.1.exon3CsaV3_1G003040.1.exon3exon
CsaV3_1G003040.1.exon2CsaV3_1G003040.1.exon2exon
CsaV3_1G003040.1.exon1CsaV3_1G003040.1.exon1exon