CsaV3_1G003040 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G003040
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 1896977 .. 1899183 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGTATAGGATCCAGGTAGATTGTAAAGCATCAGTAGTTAGGAGCAACTTTTTTTTTTTATATTTATTCCATCTGATTCATTTATTAATCTAATGTGATAGTGCTAACATATTTTGTAACGTTTAGGGTGAACAAAAGACGAGCTTAGTTGGGATTAAACGATGGTATATATTTTAAATATGTGGTCATACATTGATATATATATATCACTTAAGTTATACTTAATAAATTCACAATTAAATGGGAAGATAGGTGGCATACCGAATTTAAATGTACACTCCATTTAATCGTTGCAGTGGACGCAGACAGATACAACATCAGACGTTGTATAATTTCTTCTTTACATTCAATGATCTAACATTATTTGGCACACATCCACAGTATGTATTCTCACAATGAAATGTTCAACGTCAATATTATTTATAAAGTTACATGAACCATACAAAATAGCATATACCAATCTCATTAGGAATACACACTTAGTCAGAAGACAGAGTTAAATTTTCTAATTTTAAATATTTTTGTAAAGTTTTTCATATTCTTTTACTTATTCAACTATCTATCAAAATCAACATTGATTCTATGGTTATATCAAAATTGAATCTCATATCATTCTATCAATATTCTAATCGTCGTAGACTTTAAAATATAAACCTATTTTTGAAGGTTAAGGTAGAAATGACACACAAAGCCTGAAACAAAAGAGAACAACACTTGTTTGGTGATACGAATAGTATAACCTTAATGAGAATTTAACAAAACCAAACCGGATTATCTTTATCCAAGAATAAACGCTTCGAATTCGGTAAATACCAAAGGTCGCAACCTACGATGAAAAAAAATCTCAAGGAGGCGGGGCGGGGCGGCTCGCGGGAGTTCTAACTTCTACTTCAAAATTCTCTCAGTTCCTCATTCAAATCCTTTCTTCTCTTCTTCTTTTGCAAATTCGAACCAAATTCTTTGCTCTTATTTCAGATCTTGACCACTTTCAATTTCTCAAGGTTTCTTTTTCATCTCTAGTCTCCGTTTTTCCTGATTTTTTTTTTTGCTTCAATTGTCGCATTGATTATTTGCTGTTTTTTTCTTTTGTGTTCTCGGCTTCTTCTTCCTGTTCTTAATGTTTCTTCTCGTCTTTACGGTTGGGAATGAAGTGTAAAATTAGAGGCTGAGCTACACAACATATGGTGGAGCAGAGACATGGTTGTTTAAGAATTCGGTTGTCTTGATATTGGAGGAAAGAGATTCCTTTTAGTTTGTTTAGTCTTCTGTTGGGTCTGGAAAACAGTTGATAATACTGTGAATAGGGGATATGCACAAGGGCATTGAGTCATTAGGAGTTCAGAACATAAATTCATAATATCTGGTGCACTTCGGTGTACCTTATCCTTTAGGGACCTACTTTGAATTTTACAGATGCCTCGAGTGCATTATATTTTTATTGTTTGCATGTCAGTGTACCTATACGTGACTTTAGGATTTTTATTTTGCTAACAATAAGTTCCATTTTAGATGTTCGATTATGTAATGGAAAAATTGGAAAGGGTTGTTTTAACTTACTTTTTTTTTAATCTTTTGTTGTCTTAGATTGTAATGTTATTTCACCGTATATTAGTAATTTGAGAAGTTCCATTTTTCTTTAGGAAAATTTATTTGTTCTATGTTTACCTCTGTTCCCGATTGAAATTATATATGGGCTGATGGGAGTTATCTGTTGGTTTGTTGTGATTAGACTCGGGCAGGGAAAACTTATTTTTGGTATTTGGGAAATGTTTTTACACTAATGGAATGGTTTGCTTTTTATTACAAATGTAATTCTTTTGGTGTTTAGGGTTCTCCCCTGTTTACAATTATTAATGAAACGTTTATTTTATCAAAAAAAAGAAGAAGATATAATTCATTCATAATATGAAATTAATTGGCTTGGAGCCGCACAAACCCAAAGGAGATGAAAGATGACTATCATGCCCATTAAATTTTGAGAGCTTATAACTATTGGATCCATTTTTATATACAATATACTTTTGACCATGTATCACATGTTTTGAAATCTCTCTTGTTTTCATTGATATAGAATTATTTCAATTTTCAATTGAAAAACTGGTGGAATTATGTCTCATGGAGTTCATTTGGTGTCTTTCCATATGTTTTTTTTTTTCTGCTGCCATTGAAGTTTACAACGAAGTCAAAGGATGGAATTCTGGAATAA

mRNA sequence

GGGTATAGGATCCAGGTCGCAACCTACGATGAAAAAAAATCTCAAGGAGGCGGGGCGGGGCGGCTCGCGGGAGTTCTAACTTCTACTTCAAAATTCTCTCAGTTCCTCATTCAAATCCTTTCTTCTCTTCTTCTTTTGCAAATTCGAACCAAATTCTTTGCTCTTATTTCAGATCTTGACCACTTTCAATTTCTCAAGTTTACAACGAAGTCAAAGGATGGAATTCTGGAATAA

Coding sequence (CDS)

GGGTATAGGATCCAGGTCGCAACCTACGATGAAAAAAAATCTCAAGGAGGCGGGGCGGGGCGGCTCGCGGGAGTTCTAACTTCTACTTCAAAATTCTCTCAGTTCCTCATTCAAATCCTTTCTTCTCTTCTTCTTTTGCAAATTCGAACCAAATTCTTTGCTCTTATTTCAGATCTTGACCACTTTCAATTTCTCAAGTTTACAACGAAGTCAAAGGATGGAATTCTGGAATAA

Protein sequence

GYRIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHFQFLKFTTKSKDGILE
Homology
[Close]
BLAST of CsaV3_1G003040 vs. NCBI nr
Match: KGN63738.1 (hypothetical protein Csa_1G014350 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 7.9e-31
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 3  RIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHF 62
          RIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHF
Sbjct: 4  RIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHF 63

Query: 63 QFLKFTTKSKDGILE 78
          QFLKFTTKSKDGILE
Sbjct: 64 QFLKFTTKSKDGILE 78

[Close]
BLAST of CsaV3_1G003040 vs. TrEMBL
Match: tr|A0A0A0LPK0|A0A0A0LPK0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014350 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.2e-31
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 3  RIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHF 62
          RIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHF
Sbjct: 4  RIQVATYDEKKSQGGGAGRLAGVLTSTSKFSQFLIQILSSLLLLQIRTKFFALISDLDHF 63

Query: 63 QFLKFTTKSKDGILE 78
          QFLKFTTKSKDGILE
Sbjct: 64 QFLKFTTKSKDGILE 78

The following BLAST results are available for this feature:
BLAST of CsaV3_1G003040 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63738.17.9e-31100.00hypothetical protein Csa_1G014350 [Cucumis sativus][more]
BLAST of CsaV3_1G003040 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G003040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G003040 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LPK0|A0A0A0LPK0_CUCSA5.2e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014350 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G003040.1CsaV3_1G003040.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G003040Melon (DHL92) v3.5.1cucmeB053
CsaV3_1G003040Cucumber (Gy14) v2cgybcucB002
CsaV3_1G003040Cucumber (Gy14) v2cgybcucB003
CsaV3_1G003040Cucumber (Gy14) v1cgycucB144
CsaV3_1G003040Cucumber (Gy14) v1cgycucB314
CsaV3_1G003040Cucurbita maxima (Rimu)cmacucB0077
CsaV3_1G003040Cucurbita maxima (Rimu)cmacucB0101
CsaV3_1G003040Cucurbita maxima (Rimu)cmacucB0252
CsaV3_1G003040Cucurbita maxima (Rimu)cmacucB0466
CsaV3_1G003040Cucurbita moschata (Rifu)cmocucB0242
CsaV3_1G003040Cucurbita moschata (Rifu)cmocucB0065
CsaV3_1G003040Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G003040Cucurbita moschata (Rifu)cmocucB0463
CsaV3_1G003040Cucurbita pepo (Zucchini)cpecucB0033
CsaV3_1G003040Cucurbita pepo (Zucchini)cpecucB0431
CsaV3_1G003040Cucurbita pepo (Zucchini)cpecucB0627
CsaV3_1G003040Cucurbita pepo (Zucchini)cpecucB0814
CsaV3_1G003040Wild cucumber (PI 183967)cpicucB001
CsaV3_1G003040Wild cucumber (PI 183967)cpicucB002
CsaV3_1G003040Bottle gourd (USVL1VR-Ls)cuclsiB024
CsaV3_1G003040Bottle gourd (USVL1VR-Ls)cuclsiB081
CsaV3_1G003040Melon (DHL92) v3.5.1cucmeB026
CsaV3_1G003040Melon (DHL92) v3.6.1cucmedB024
CsaV3_1G003040Melon (DHL92) v3.6.1cucmedB050
CsaV3_1G003040Watermelon (Charleston Gray)cucwcgB064
CsaV3_1G003040Watermelon (Charleston Gray)cucwcgB088
CsaV3_1G003040Watermelon (97103) v1cucwmB071
CsaV3_1G003040Watermelon (97103) v1cucwmB105
CsaV3_1G003040Watermelon (97103) v2cucwmbB055
CsaV3_1G003040Watermelon (97103) v2cucwmbB076
CsaV3_1G003040Wax gourdcucwgoB119
CsaV3_1G003040Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G003040Silver-seed gourdcarcucB0419
CsaV3_1G003040Silver-seed gourdcarcucB0494
CsaV3_1G003040Silver-seed gourdcarcucB0549
CsaV3_1G003040Silver-seed gourdcarcucB0629