Csa7G449440.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa7G449440.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 18518804 .. 18519484 (-)
Sequence length240
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTCATAGTAATCTACTGACTAGATTCATATCAAAGATTATATCTCCATTGACTTCATTTGGATAATCTTGTAGGATCTATGTTGTATATACCTTTTTGGCGGCTGTTTAATGGATGAGAGGTATTTTGTTATCTTTATGTTCTTTTCAGCTTCCTAATTTTGAATTATTTATTTGCCGATCATTCTTTTCTTTACATCTTTTTTATTTTGTTTACAGTTGTACATTGCCTGATAAGACCTTATCAACCACAGAAAGTTCAATCATATTTGGTCGTAATGAAGATCTACTTATTTACAAAATCATGGTATTTTTTTTTTGTCTATACCATTTGCTTAGTTTTTCGTATTTTCTTACCTCTTTTCATTCGTTACGATACGTTATGTCGATTATTTAAAACATGATAAATTTTGTTTCTTGGTTTCTGGCTCTGCATCACTGGATAAAGCTTATCAGCAATTCCGATTTGTATATTCTAGTCAAATATTAGTTTGTGCCATCATGAAATAAAAATCTCAAGTTTGAATTTCAAGCTCTCATTAGGGTTAATCCTAAGAACCAACTTCTTCTTTTTTTAATTGCAGACATGGAGGTCTTGTTTAAACGTTGTTTTTATATTTAGTAGGAGACTCTCTTTGAACCCTGAATGTTTATCGACATGCACCTGTCACATTTGA

mRNA sequence

ATGGATCTCATAGATCTATGTTGTATATACCTTTTTGGCGGCTGTTTAATGGATGAGAGTTGTACATTGCCTGATAAGACCTTATCAACCACAGAAAGTTCAATCATATTTGGTCGTAATGAAGATCTACTTATTTACAAAATCATGACATGGAGGTCTTGTTTAAACGTTGTTTTTATATTTAGTAGGAGACTCTCTTTGAACCCTGAATGTTTATCGACATGCACCTGTCACATTTGA

Coding sequence (CDS)

ATGGATCTCATAGATCTATGTTGTATATACCTTTTTGGCGGCTGTTTAATGGATGAGAGTTGTACATTGCCTGATAAGACCTTATCAACCACAGAAAGTTCAATCATATTTGGTCGTAATGAAGATCTACTTATTTACAAAATCATGACATGGAGGTCTTGTTTAAACGTTGTTTTTATATTTAGTAGGAGACTCTCTTTGAACCCTGAATGTTTATCGACATGCACCTGTCACATTTGA

Protein sequence

MDLIDLCCIYLFGGCLMDESCTLPDKTLSTTESSIIFGRNEDLLIYKIMTWRSCLNVVFIFSRRLSLNPECLSTCTCHI*
Homology
[Close]
BLAST of Csa7G449440.1 vs. TrEMBL
Match: A0A0A0K9G6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G449440 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MDLIDLCCIYLFGGCLMDESCTLPDKTLSTTESSIIFGRNEDLLIYKIMTWRSCLNVVFI 60
          MDLIDLCCIYLFGGCLMDESCTLPDKTLSTTESSIIFGRNEDLLIYKIMTWRSCLNVVFI
Sbjct: 1  MDLIDLCCIYLFGGCLMDESCTLPDKTLSTTESSIIFGRNEDLLIYKIMTWRSCLNVVFI 60

Query: 61 FSRRLSLNPECLSTCTCHI 80
          FSRRLSLNPECLSTCTCHI
Sbjct: 61 FSRRLSLNPECLSTCTCHI 79

[Close]
BLAST of Csa7G449440.1 vs. NCBI nr
Match: gi|700190251|gb|KGN45484.1| (hypothetical protein Csa_7G449440 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 1.9e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MDLIDLCCIYLFGGCLMDESCTLPDKTLSTTESSIIFGRNEDLLIYKIMTWRSCLNVVFI 60
          MDLIDLCCIYLFGGCLMDESCTLPDKTLSTTESSIIFGRNEDLLIYKIMTWRSCLNVVFI
Sbjct: 1  MDLIDLCCIYLFGGCLMDESCTLPDKTLSTTESSIIFGRNEDLLIYKIMTWRSCLNVVFI 60

Query: 61 FSRRLSLNPECLSTCTCHI 80
          FSRRLSLNPECLSTCTCHI
Sbjct: 61 FSRRLSLNPECLSTCTCHI 79

The following BLAST results are available for this feature:
BLAST of Csa7G449440.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9G6_CUCSA1.3e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G449440 PE=4 SV=1[more]
BLAST of Csa7G449440.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190251|gb|KGN45484.1|1.9e-39100.00hypothetical protein Csa_7G449440 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa7G449440Csa7G449440gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa7G449440.1Csa7G449440.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa7G449440.1.cds4Csa7G449440.1.cds4CDS
Csa7G449440.1.cds3Csa7G449440.1.cds3CDS
Csa7G449440.1.cds2Csa7G449440.1.cds2CDS
Csa7G449440.1.cds1Csa7G449440.1.cds1CDS