Csa7G428240.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G428240.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 16491974 .. 16492225 (-)
Sequence length	252

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGATTGGTCCAATGTTTACTCCTTAGAGCAGACTGGAAAGACAGGTGGGTGGCAAATTTTTACCTTATCACCTCTCGATGAATATAGCCTTCCCAAGGGCTGGTCTCCTTTTCTAGCCATGATTATGATGTTTCCATGTGGAGGCCATTTGGGGGTCAACAAGGTTGCCCTTAGAGCAAAGACTTGTGCTTGGACAATATTCATGTACGATTCCACCAAGGAAAACATAGACAAAAAAAATTTCTAG

mRNA sequence

ATGAGGGATTGGTCCAATGTTTACTCCTTAGAGCAGACTGGAAAGACAGGTGGGTGGCAAATTTTTACCTTATCACCTCTCGATGAATATAGCCTTCCCAAGGGCTGGTCTCCTTTTCTAGCCATGATTATGATGTTTCCATGTGGAGGCCATTTGGGGGTCAACAAGGTTGCCCTTAGAGCAAAGACTTGTGCTTGGACAATATTCATGTACGATTCCACCAAGGAAAACATAGACAAAAAAAATTTCTAG

Coding sequence (CDS)

ATGAGGGATTGGTCCAATGTTTACTCCTTAGAGCAGACTGGAAAGACAGGTGGGTGGCAAATTTTTACCTTATCACCTCTCGATGAATATAGCCTTCCCAAGGGCTGGTCTCCTTTTCTAGCCATGATTATGATGTTTCCATGTGGAGGCCATTTGGGGGTCAACAAGGTTGCCCTTAGAGCAAAGACTTGTGCTTGGACAATATTCATGTACGATTCCACCAAGGAAAACATAGACAAAAAAAATTTCTAG

Protein sequence

MRDWSNVYSLEQTGKTGGWQIFTLSPLDEYSLPKGWSPFLAMIMMFPCGGHLGVNKVALRAKTCAWTIFMYDSTKENIDKKNF*

Homology

[Close]

BLAST of Csa7G428240.1 vs. TrEMBL
Match: A0A0A0KBG7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428240 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.5e-43
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1  MRDWSNVYSLEQTGKTGGWQIFTLSPLDEYSLPKGWSPFLAMIMMFPCGGHLGVNKVALR 60
          MRDWSNVYSLEQTGKTGGWQIFTLSPLDEYSLPKGWSPFLAMIMMFPCGGHLGVNKVALR
Sbjct: 1  MRDWSNVYSLEQTGKTGGWQIFTLSPLDEYSLPKGWSPFLAMIMMFPCGGHLGVNKVALR 60

Query: 61 AKTCAWTIFMYDSTKENIDKKNF 84
          AKTCAWTIFMYDSTKENIDKKNF
Sbjct: 61 AKTCAWTIFMYDSTKENIDKKNF 83

[Close]

BLAST of Csa7G428240.1 vs. NCBI nr
Match: gi|700189903|gb|KGN45136.1| (hypothetical protein Csa_7G428240 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 5.0e-43
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1  MRDWSNVYSLEQTGKTGGWQIFTLSPLDEYSLPKGWSPFLAMIMMFPCGGHLGVNKVALR 60
          MRDWSNVYSLEQTGKTGGWQIFTLSPLDEYSLPKGWSPFLAMIMMFPCGGHLGVNKVALR
Sbjct: 1  MRDWSNVYSLEQTGKTGGWQIFTLSPLDEYSLPKGWSPFLAMIMMFPCGGHLGVNKVALR 60

Query: 61 AKTCAWTIFMYDSTKENIDKKNF 84
          AKTCAWTIFMYDSTKENIDKKNF
Sbjct: 61 AKTCAWTIFMYDSTKENIDKKNF 83

The following BLAST results are available for this feature:

BLAST of Csa7G428240.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBG7_CUCSA	3.5e-43	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428240 PE=4 SV=1	[more]

BLAST of Csa7G428240.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189903\|gb\|KGN45136.1\|	5.0e-43	100.00	hypothetical protein Csa_7G428240 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G428240	Csa7G428240	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa7G428240.1	Csa7G428240.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa7G428240.1.cds1	Csa7G428240.1.cds1	CDS