Csa7G420710.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa7G420710.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 16130195 .. 16130533 (+)
Sequence length234
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCATAATCCGCAAAGAACAAAGCAAAGGGCTAGGCGATTTGATACACACGTAGCCACATTTCGTATACTCCTCCCGCCTCGGGCTCGCACTGTGAATTGGGAAACTCGTTTCTCACTGATCTGATGGTGTGGCGATGCCGAAAACAAACTTTAATTTAATCTTCATCTCCTCATTGACCGTACAAACTTCAAAATTTGTGAAACTGAAACAGCAATAGACAAAGCTAATCCCAATTCCAAGAGACAAATTCCACAGATCCTTTGCTCAAATTTGCAGCAAAATCACCGCGACCTGATTGCTATGTCGAGTCGGCCAATCATTACTTTCTCTTAG

mRNA sequence

ATGGAGCATAATCCGCAAAGAACAAAGCAAAGGGCTAGGCGATTTGATACACACGTAGCCACATTTCGTATACTCCTCCCGCCTCGGGCTCGCACTGTGAATTGGGAAACTCCAATAGACAAAGCTAATCCCAATTCCAAGAGACAAATTCCACAGATCCTTTGCTCAAATTTGCAGCAAAATCACCGCGACCTGATTGCTATGTCGAGTCGGCCAATCATTACTTTCTCTTAG

Coding sequence (CDS)

ATGGAGCATAATCCGCAAAGAACAAAGCAAAGGGCTAGGCGATTTGATACACACGTAGCCACATTTCGTATACTCCTCCCGCCTCGGGCTCGCACTGTGAATTGGGAAACTCCAATAGACAAAGCTAATCCCAATTCCAAGAGACAAATTCCACAGATCCTTTGCTCAAATTTGCAGCAAAATCACCGCGACCTGATTGCTATGTCGAGTCGGCCAATCATTACTTTCTCTTAG

Protein sequence

MEHNPQRTKQRARRFDTHVATFRILLPPRARTVNWETPIDKANPNSKRQIPQILCSNLQQNHRDLIAMSSRPIITFS*
Homology
[Close]
BLAST of Csa7G420710.1 vs. TrEMBL
Match: A0A0A0K6G9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420710 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 5.9e-37
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MEHNPQRTKQRARRFDTHVATFRILLPPRARTVNWETPIDKANPNSKRQIPQILCSNLQQ 60
          MEHNPQRTKQRARRFDTHVATFRILLPPRARTVNWETPIDKANPNSKRQIPQILCSNLQQ
Sbjct: 1  MEHNPQRTKQRARRFDTHVATFRILLPPRARTVNWETPIDKANPNSKRQIPQILCSNLQQ 60

Query: 61 NHRDLIAMSSRPIITFS 78
          NHRDLIAMSSRPIITFS
Sbjct: 61 NHRDLIAMSSRPIITFS 77

[Close]
BLAST of Csa7G420710.1 vs. NCBI nr
Match: gi|700189845|gb|KGN45078.1| (hypothetical protein Csa_7G420710 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 8.4e-37
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MEHNPQRTKQRARRFDTHVATFRILLPPRARTVNWETPIDKANPNSKRQIPQILCSNLQQ 60
          MEHNPQRTKQRARRFDTHVATFRILLPPRARTVNWETPIDKANPNSKRQIPQILCSNLQQ
Sbjct: 1  MEHNPQRTKQRARRFDTHVATFRILLPPRARTVNWETPIDKANPNSKRQIPQILCSNLQQ 60

Query: 61 NHRDLIAMSSRPIITFS 78
          NHRDLIAMSSRPIITFS
Sbjct: 61 NHRDLIAMSSRPIITFS 77

The following BLAST results are available for this feature:
BLAST of Csa7G420710.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6G9_CUCSA5.9e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420710 PE=4 SV=1[more]
BLAST of Csa7G420710.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189845|gb|KGN45078.1|8.4e-37100.00hypothetical protein Csa_7G420710 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa7G420710Csa7G420710gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa7G420710.1Csa7G420710.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa7G420710.1.cds1Csa7G420710.1.cds1CDS
Csa7G420710.1.cds2Csa7G420710.1.cds2CDS