Csa7G420150.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa7G420150.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 16075015 .. 16075466 (+)
Sequence length318
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACGTAATGCTCTGTCTCAATGCGTATTACAAACGGAAGACGAAGGTCGCCGGCGAAAATTGATCGGAAGTAGGAGACGACTGGCGAAGTTCAACGAGGTCAAGTCAAAGAAAGCTCGACGACTTCGTTCTACCAAGCAGTCGCCTGCTTCGAGGTTTCGCTTTTGTATGTATATATATTTTATTATAGCCTCCGTTCTGAACGCGAGCGACCTGTCATTACTCTGACTGAAGCATTGAGGACTTGTTTCTGTGGAATTTCATATCTGATCAACGGTATGAATCGGTTTCTTCTCATTTTTACTAGCTACCTGTTGAATTGCTGATGCTTTCTCTCTTTAAATGTTAAAGAACATGCATGATTTTGATGTGCAGTGTATTGCTTTACTAGGTCCGCTAAATTAAGCTCAATTTGCTGTCAGTGCGGATTTCGGAGTTTTAGCTTTTGA

mRNA sequence

ATGAAACGTAATGCTCTGTCTCAATGCGTATTACAAACGGAAGACGAAGGTCGCCGGCGAAAATTGATCGGAAGTAGGAGACGACTGGCGAAGTTCAACGAGGTCAAGTCAAAGAAAGCTCGACGACTTCGTTCTACCAAGCAGTCGCCTGCTTCGAGCCTCCGTTCTGAACGCGAGCGACCTGTCATTACTCTGACTGAAGCATTGAGGACTTGTTTCTGTGGAATTTCATATCTGATCAACGTGTATTGCTTTACTAGGTCCGCTAAATTAAGCTCAATTTGCTGTCAGTGCGGATTTCGGAGTTTTAGCTTTTGA

Coding sequence (CDS)

ATGAAACGTAATGCTCTGTCTCAATGCGTATTACAAACGGAAGACGAAGGTCGCCGGCGAAAATTGATCGGAAGTAGGAGACGACTGGCGAAGTTCAACGAGGTCAAGTCAAAGAAAGCTCGACGACTTCGTTCTACCAAGCAGTCGCCTGCTTCGAGCCTCCGTTCTGAACGCGAGCGACCTGTCATTACTCTGACTGAAGCATTGAGGACTTGTTTCTGTGGAATTTCATATCTGATCAACGTGTATTGCTTTACTAGGTCCGCTAAATTAAGCTCAATTTGCTGTCAGTGCGGATTTCGGAGTTTTAGCTTTTGA

Protein sequence

MKRNALSQCVLQTEDEGRRRKLIGSRRRLAKFNEVKSKKARRLRSTKQSPASSLRSERERPVITLTEALRTCFCGISYLINVYCFTRSAKLSSICCQCGFRSFSF*
Homology
[Close]
BLAST of Csa7G420150.1 vs. TrEMBL
Match: A0A0A0K5X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420150 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 6.7e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MKRNALSQCVLQTEDEGRRRKLIGSRRRLAKFNEVKSKKARRLRSTKQSPASSLRSERER 60
           MKRNALSQCVLQTEDEGRRRKLIGSRRRLAKFNEVKSKKARRLRSTKQSPASSLRSERER
Sbjct: 1   MKRNALSQCVLQTEDEGRRRKLIGSRRRLAKFNEVKSKKARRLRSTKQSPASSLRSERER 60

Query: 61  PVITLTEALRTCFCGISYLINVYCFTRSAKLSSICCQCGFRSFSF 106
           PVITLTEALRTCFCGISYLINVYCFTRSAKLSSICCQCGFRSFSF
Sbjct: 61  PVITLTEALRTCFCGISYLINVYCFTRSAKLSSICCQCGFRSFSF 105

[Close]
BLAST of Csa7G420150.1 vs. NCBI nr
Match: gi|700189837|gb|KGN45070.1| (hypothetical protein Csa_7G420150 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 9.6e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MKRNALSQCVLQTEDEGRRRKLIGSRRRLAKFNEVKSKKARRLRSTKQSPASSLRSERER 60
           MKRNALSQCVLQTEDEGRRRKLIGSRRRLAKFNEVKSKKARRLRSTKQSPASSLRSERER
Sbjct: 1   MKRNALSQCVLQTEDEGRRRKLIGSRRRLAKFNEVKSKKARRLRSTKQSPASSLRSERER 60

Query: 61  PVITLTEALRTCFCGISYLINVYCFTRSAKLSSICCQCGFRSFSF 106
           PVITLTEALRTCFCGISYLINVYCFTRSAKLSSICCQCGFRSFSF
Sbjct: 61  PVITLTEALRTCFCGISYLINVYCFTRSAKLSSICCQCGFRSFSF 105

The following BLAST results are available for this feature:
BLAST of Csa7G420150.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5X5_CUCSA6.7e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G420150 PE=4 SV=1[more]
BLAST of Csa7G420150.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189837|gb|KGN45070.1|9.6e-52100.00hypothetical protein Csa_7G420150 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa7G420150Csa7G420150gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa7G420150.1Csa7G420150.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa7G420150.1.cds1Csa7G420150.1.cds1CDS
Csa7G420150.1.cds2Csa7G420150.1.cds2CDS
Csa7G420150.1.cds3Csa7G420150.1.cds3CDS