Csa7G075030.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa7G075030.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 5205872 .. 5206961 (+)
Sequence length333
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAGAGAGTGCAATGTTAGTTACTAGTCTGGATGATATGTACCTAAGTTCTTTATGTATTTATTATGATTGATGGTTTTAATAACACAATCACAGCCTTTTCTCTTCATATGACATTGTCTTGACCCTTTTGGCCAATTGATTCAACTCATTCACAACCTTGTTGCTGATAGCTATATCAATGCATATTGGTATCTTTTGGTCAACTCAAAGCTGCTCATAGTCCGTTAACTGGATCTTCGAGCTGCAATTTTCAGATTTAGTACATTTGATGCTTATAATTCCAGTAAATATAAGAATTCCTGCTAGTATCCAGCTGAATTGGAGGTTGGCGAGTGCCCGTGCCCTCATATCAGCTTCTTCAGAGGCACAAATGACTGCTCCAAGCATTTCATCTTTGCCGTTGTCCATCACCCTCATACTGCAGCCCTTGGGAACTAAGTTTGGAACCCATAGCATGAACCCCATGTTCATAAACCAACACCCTTGCAAAACAACCAATAATGAAAGAATAAGAGCTGCAGGGAAGTTGCTAGGACAACAAGCAGCTACGATTACTGACACAAGAGACGCGAACACTATCACTTGCAAGAGCCAATGGTAATGACCTTCGATGCCATTATGGTCAGCTGAGTGGAAATGGAGCAAGAATAACTCCTGACTGAAAACACAGGCTGCAAAGACGCCATCAATACCAGATAATACATTTGATGAGCGATTCAACTCGTTATAGAGGGTAAAACCTGAAAATATGGCAAGGTGTAGGAACATGCTAGCGTGCTCCAAGTTGATGACTTTGAAAGACAAATGAACAAAAGGGAAGTCCCAAAATTGTCTGAAAATTGCAATGATCGAAAAAGAGAACACGAAAATGAGCTCCAAGTACTTGAATTTGGAAAAAGGTTGGTCGAGAGGATACCAAAATCGTACTTTGAAATTTGAAGAGCCTTTGAGATTGTAGGTTTTGATCGTATTCACAGTATGCCAAAGGCCAAGAAGAGTGAATGCAAAACCGGATGCTACATGAGGTACTAATTGCCCCATTGAAACCTCTACTTTCAAACTCTAGCTTACCAAATTCATCCATAA

mRNA sequence

ATGCTTATAATTCCAGTAAATATAAGAATTCCTGCTAGTATCCAGCTGAATTGGAGGTTGGCGAGTGCCCGTGCCCTCATATCAGCTTCTTCAGAGGCACAAATGACTGCTCCAAGCATTTCATCTTTGCCGTTGTCCATCACCCTCATACTGCAGCCCTTGGGAACTAAGTTTGGAACCCATAGCATGAACCCCATGTTCATAAACCAACACCCTTGCAAAACAACCAATAATGAAAGAATAAGAGCTGCAGGGAAGTTGCTAGGACAACAAGCAGCTACGATTACTGACACAAGAGACGCGAACACTATCACTTGCAAGAGCCAATGGTAA

Coding sequence (CDS)

ATGCTTATAATTCCAGTAAATATAAGAATTCCTGCTAGTATCCAGCTGAATTGGAGGTTGGCGAGTGCCCGTGCCCTCATATCAGCTTCTTCAGAGGCACAAATGACTGCTCCAAGCATTTCATCTTTGCCGTTGTCCATCACCCTCATACTGCAGCCCTTGGGAACTAAGTTTGGAACCCATAGCATGAACCCCATGTTCATAAACCAACACCCTTGCAAAACAACCAATAATGAAAGAATAAGAGCTGCAGGGAAGTTGCTAGGACAACAAGCAGCTACGATTACTGACACAAGAGACGCGAACACTATCACTTGCAAGAGCCAATGGTAA

Protein sequence

MLIIPVNIRIPASIQLNWRLASARALISASSEAQMTAPSISSLPLSITLILQPLGTKFGTHSMNPMFINQHPCKTTNNERIRAAGKLLGQQAATITDTRDANTITCKSQW*
Homology
[Close]
BLAST of Csa7G075030.1 vs. TrEMBL
Match: A0A0A0K847_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075030 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.6e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MLIIPVNIRIPASIQLNWRLASARALISASSEAQMTAPSISSLPLSITLILQPLGTKFGT 60
           MLIIPVNIRIPASIQLNWRLASARALISASSEAQMTAPSISSLPLSITLILQPLGTKFGT
Sbjct: 1   MLIIPVNIRIPASIQLNWRLASARALISASSEAQMTAPSISSLPLSITLILQPLGTKFGT 60

Query: 61  HSMNPMFINQHPCKTTNNERIRAAGKLLGQQAATITDTRDANTITCKSQW 111
           HSMNPMFINQHPCKTTNNERIRAAGKLLGQQAATITDTRDANTITCKSQW
Sbjct: 61  HSMNPMFINQHPCKTTNNERIRAAGKLLGQQAATITDTRDANTITCKSQW 110

[Close]
BLAST of Csa7G075030.1 vs. NCBI nr
Match: gi|700188738|gb|KGN43971.1| (hypothetical protein Csa_7G075030 [Cucumis sativus])

HSP 1 Score: 219.2 bits (557), Expect = 3.7e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MLIIPVNIRIPASIQLNWRLASARALISASSEAQMTAPSISSLPLSITLILQPLGTKFGT 60
           MLIIPVNIRIPASIQLNWRLASARALISASSEAQMTAPSISSLPLSITLILQPLGTKFGT
Sbjct: 1   MLIIPVNIRIPASIQLNWRLASARALISASSEAQMTAPSISSLPLSITLILQPLGTKFGT 60

Query: 61  HSMNPMFINQHPCKTTNNERIRAAGKLLGQQAATITDTRDANTITCKSQW 111
           HSMNPMFINQHPCKTTNNERIRAAGKLLGQQAATITDTRDANTITCKSQW
Sbjct: 61  HSMNPMFINQHPCKTTNNERIRAAGKLLGQQAATITDTRDANTITCKSQW 110

The following BLAST results are available for this feature:
BLAST of Csa7G075030.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K847_CUCSA2.6e-54100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075030 PE=4 SV=1[more]
BLAST of Csa7G075030.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188738|gb|KGN43971.1|3.7e-54100.00hypothetical protein Csa_7G075030 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa7G075030Csa7G075030gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa7G075030.1Csa7G075030.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa7G075030.1.utr5p1Csa7G075030.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa7G075030.1.cds1Csa7G075030.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa7G075030.1.utr3p1Csa7G075030.1.utr3p1three_prime_UTR