Csa7G075030 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G075030
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 5205872 .. 5206961 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAGAGAGTGCAATGTTAGTTACTAGTCTGGATGATATGTACCTAAGTTCTTTATGTATTTATTATGATTGATGGTTTTAATAACACAATCACAGCCTTTTCTCTTCATATGACATTGTCTTGACCCTTTTGGCCAATTGATTCAACTCATTCACAACCTTGTTGCTGATAGCTATATCAATGCATATTGGTATCTTTTGGTCAACTCAAAGCTGCTCATAGTCCGTTAACTGGATCTTCGAGCTGCAATTTTCAGATTTAGTACATTTGATGCTTATAATTCCAGTAAATATAAGAATTCCTGCTAGTATCCAGCTGAATTGGAGGTTGGCGAGTGCCCGTGCCCTCATATCAGCTTCTTCAGAGGCACAAATGACTGCTCCAAGCATTTCATCTTTGCCGTTGTCCATCACCCTCATACTGCAGCCCTTGGGAACTAAGTTTGGAACCCATAGCATGAACCCCATGTTCATAAACCAACACCCTTGCAAAACAACCAATAATGAAAGAATAAGAGCTGCAGGGAAGTTGCTAGGACAACAAGCAGCTACGATTACTGACACAAGAGACGCGAACACTATCACTTGCAAGAGCCAATGGTAATGACCTTCGATGCCATTATGGTCAGCTGAGTGGAAATGGAGCAAGAATAACTCCTGACTGAAAACACAGGCTGCAAAGACGCCATCAATACCAGATAATACATTTGATGAGCGATTCAACTCGTTATAGAGGGTAAAACCTGAAAATATGGCAAGGTGTAGGAACATGCTAGCGTGCTCCAAGTTGATGACTTTGAAAGACAAATGAACAAAAGGGAAGTCCCAAAATTGTCTGAAAATTGCAATGATCGAAAAAGAGAACACGAAAATGAGCTCCAAGTACTTGAATTTGGAAAAAGGTTGGTCGAGAGGATACCAAAATCGTACTTTGAAATTTGAAGAGCCTTTGAGATTGTAGGTTTTGATCGTATTCACAGTATGCCAAAGGCCAAGAAGAGTGAATGCAAAACCGGATGCTACATGAGGTACTAATTGCCCCATTGAAACCTCTACTTTCAAACTCTAGCTTACCAAATTCATCCATAA

mRNA sequence

ATGCTTATAATTCCAGTAAATATAAGAATTCCTGCTAGTATCCAGCTGAATTGGAGGTTGGCGAGTGCCCGTGCCCTCATATCAGCTTCTTCAGAGGCACAAATGACTGCTCCAAGCATTTCATCTTTGCCGTTGTCCATCACCCTCATACTGCAGCCCTTGGGAACTAAGTTTGGAACCCATAGCATGAACCCCATGTTCATAAACCAACACCCTTGCAAAACAACCAATAATGAAAGAATAAGAGCTGCAGGGAAGTTGCTAGGACAACAAGCAGCTACGATTACTGACACAAGAGACGCGAACACTATCACTTGCAAGAGCCAATGGTAA

Coding sequence (CDS)

ATGCTTATAATTCCAGTAAATATAAGAATTCCTGCTAGTATCCAGCTGAATTGGAGGTTGGCGAGTGCCCGTGCCCTCATATCAGCTTCTTCAGAGGCACAAATGACTGCTCCAAGCATTTCATCTTTGCCGTTGTCCATCACCCTCATACTGCAGCCCTTGGGAACTAAGTTTGGAACCCATAGCATGAACCCCATGTTCATAAACCAACACCCTTGCAAAACAACCAATAATGAAAGAATAAGAGCTGCAGGGAAGTTGCTAGGACAACAAGCAGCTACGATTACTGACACAAGAGACGCGAACACTATCACTTGCAAGAGCCAATGGTAA

Protein sequence

MLIIPVNIRIPASIQLNWRLASARALISASSEAQMTAPSISSLPLSITLILQPLGTKFGTHSMNPMFINQHPCKTTNNERIRAAGKLLGQQAATITDTRDANTITCKSQW*

Homology

[Close]

BLAST of Csa7G075030 vs. TrEMBL
Match: A0A0A0K847_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075030 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.6e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MLIIPVNIRIPASIQLNWRLASARALISASSEAQMTAPSISSLPLSITLILQPLGTKFGT 60
           MLIIPVNIRIPASIQLNWRLASARALISASSEAQMTAPSISSLPLSITLILQPLGTKFGT
Sbjct: 1   MLIIPVNIRIPASIQLNWRLASARALISASSEAQMTAPSISSLPLSITLILQPLGTKFGT 60

Query: 61  HSMNPMFINQHPCKTTNNERIRAAGKLLGQQAATITDTRDANTITCKSQW 111
           HSMNPMFINQHPCKTTNNERIRAAGKLLGQQAATITDTRDANTITCKSQW
Sbjct: 61  HSMNPMFINQHPCKTTNNERIRAAGKLLGQQAATITDTRDANTITCKSQW 110

[Close]

BLAST of Csa7G075030 vs. NCBI nr
Match: gi|700188738|gb|KGN43971.1| (hypothetical protein Csa_7G075030 [Cucumis sativus])

HSP 1 Score: 219.2 bits (557), Expect = 3.7e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MLIIPVNIRIPASIQLNWRLASARALISASSEAQMTAPSISSLPLSITLILQPLGTKFGT 60
           MLIIPVNIRIPASIQLNWRLASARALISASSEAQMTAPSISSLPLSITLILQPLGTKFGT
Sbjct: 1   MLIIPVNIRIPASIQLNWRLASARALISASSEAQMTAPSISSLPLSITLILQPLGTKFGT 60

Query: 61  HSMNPMFINQHPCKTTNNERIRAAGKLLGQQAATITDTRDANTITCKSQW 111
           HSMNPMFINQHPCKTTNNERIRAAGKLLGQQAATITDTRDANTITCKSQW
Sbjct: 61  HSMNPMFINQHPCKTTNNERIRAAGKLLGQQAATITDTRDANTITCKSQW 110

The following BLAST results are available for this feature:

BLAST of Csa7G075030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K847_CUCSA	2.6e-54	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G075030 PE=4 SV=1	[more]

BLAST of Csa7G075030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188738\|gb\|KGN43971.1\|	3.7e-54	100.00	hypothetical protein Csa_7G075030 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU084675	cucumber EST collection version 3.0	transcribed_cluster
CU114935	cucumber EST collection version 3.0	transcribed_cluster
CU130320	cucumber EST collection version 3.0	transcribed_cluster
CU130668	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G075030.1	Csa7G075030.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU114935	CU114935	transcribed_cluster
CU084675	CU084675	transcribed_cluster
CU130320	CU130320	transcribed_cluster
CU130668	CU130668	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G075030	Cucumber (Gy14) v2	cgybcuB087
Csa7G075030	Cucumber (Gy14) v2	cgybcuB091
Csa7G075030	Cucumber (Gy14) v2	cgybcuB324
Csa7G075030	Melon (DHL92) v3.6.1	cumedB509
Csa7G075030	Melon (DHL92) v3.6.1	cumedB526
Csa7G075030	Silver-seed gourd	carcuB0233
Csa7G075030	Silver-seed gourd	carcuB0827
Csa7G075030	Watermelon (97103) v2	cuwmbB530
Csa7G075030	Watermelon (97103) v2	cuwmbB554
Csa7G075030	Watermelon (97103) v2	cuwmbB569
Csa7G075030	Wax gourd	cuwgoB663
Csa7G075030	Cucumber (Chinese Long) v2	cucuB079
Csa7G075030	Cucumber (Chinese Long) v2	cucuB083
Csa7G075030	Cucumber (Gy14) v1	cgycuB322
Csa7G075030	Cucurbita maxima (Rimu)	cmacuB146
Csa7G075030	Cucurbita maxima (Rimu)	cmacuB528
Csa7G075030	Cucurbita moschata (Rifu)	cmocuB137
Csa7G075030	Cucurbita moschata (Rifu)	cmocuB519
Csa7G075030	Melon (DHL92) v3.5.1	cumeB530
Csa7G075030	Melon (DHL92) v3.5.1	cumeB549
Csa7G075030	Watermelon (Charleston Gray)	cuwcgB538
Csa7G075030	Watermelon (Charleston Gray)	cuwcgB547
Csa7G075030	Watermelon (Charleston Gray)	cuwcgB568
Csa7G075030	Watermelon (97103) v1	cuwmB576
Csa7G075030	Watermelon (97103) v1	cuwmB605
Csa7G075030	Cucurbita pepo (Zucchini)	cpecuB258
Csa7G075030	Cucurbita pepo (Zucchini)	cpecuB695
Csa7G075030	Bottle gourd (USVL1VR-Ls)	culsiB492
Csa7G075030	Bottle gourd (USVL1VR-Ls)	culsiB495
Csa7G075030	Bottle gourd (USVL1VR-Ls)	culsiB537