Csa7G074910.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G074910.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 5161626 .. 5162318 (+)
Sequence length	171

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGACTAAGAAAGAACATTTCTCCAAAAAGAAAAAAGAAAAATAAAAAAAGAAAGGAAAAGGAAAAAAGAACGACGCGGAAAATTGAGAGAAACAGAGAAAATCGTTTCGAAATTTCTCAATCTGAAAGAAACCAGAAATCGAAAGCACACGTTCTTCAATCCGGCGGAGATGGGGATTCAGAGATTAGAACTTTGTTTGGAGCTTCTGCGAATGGCTATCAATTTCGTGGTGGTCGTTGCCGAATCCGTGGGCGACGTTATACACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGAGTTCCGGTTCCTTTTGTGGGCTTTTACCCCTAAATTCATCCTCCGCTGCCGTCCGCGGCGGCGATGTGGCGATGTTCGTTCAAAGTTAGTGTGAATTTTGTTTTTTGTTTTGTTTAGTAATTAAATGGAGGTATTATTGTAATTGATCTCTCTATTGGAAATAATCCAATTATCTTCTTTTTTTAGTACGAAATTACTCTCTCTCTCTCTCTTATCTGGGTTAGTACGAAACTATCGAATTGTTATTTGGTTGTAATCTGTTGGTTTTATCGTCATTTTGACGCCGGACCTGAAAGTCGCGCTTTAACTTCAATTATGTTCTTTCTTTCTTTTTCTTTTTCTTTTTTTAAAAAAAGAAAATGTATGAACTGGATGGGTATTTGTG

mRNA sequence

ATGGGGATTCAGAGATTAGAACTTTGTTTGGAGCTTCTGCGAATGGCTATCAATTTCGTGGTGGTCGTTGCCGAATCCGTGGGCGACGTTATACACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGAGTTCCGGTTCCTTTTGTGGGCTTTTACCCCTAA

Coding sequence (CDS)

ATGGGGATTCAGAGATTAGAACTTTGTTTGGAGCTTCTGCGAATGGCTATCAATTTCGTGGTGGTCGTTGCCGAATCCGTGGGCGACGTTATACACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGAGTTCCGGTTCCTTTTGTGGGCTTTTACCCCTAA

Protein sequence

MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP*

Homology

[Close]

BLAST of Csa7G074910.1 vs. TrEMBL
Match: A0A0A0K3A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G074910 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1


Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 57
          MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP
Sbjct: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 56

[Close]

BLAST of Csa7G074910.1 vs. TrEMBL
Match: A0A0D2SML3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G239600 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.0e-06
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGG-RVPVPFVGFYP 57
          M +Q+LE+C+EL+++A+ FVVVVAE+VG VIH+   P  +  +     PVP VGF P
Sbjct: 1  MVLQKLEMCVELMKLAVEFVVVVAEAVGIVIHQNHSPPVMTASRSFATPVPLVGFLP 57

[Close]

BLAST of Csa7G074910.1 vs. TAIR10
Match: AT3G19030.1 (AT3G19030.1 unknown protein)

HSP 1 Score: 46.2 bits (108), Expect = 7.8e-06
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 1


Query: 4  QRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTA-GGR------VPVPFVGF 55
          Q+LE+C+EL+++A+ FV  VAESV +   +   P +LP   GGR      VP+P VGF
Sbjct: 4  QKLEICIELVKIAVVFVTTVAESVEEAFRK--PPPSLPAVHGGRRNNYAAVPIPLVGF 59

[Close]

BLAST of Csa7G074910.1 vs. NCBI nr
Match: gi|659109833|ref|XP_008454905.1| (PREDICTED: uncharacterized protein LOC103495210 [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1


Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 57
          MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP
Sbjct: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 56

[Close]

BLAST of Csa7G074910.1 vs. NCBI nr
Match: gi|1009115522|ref|XP_015874275.1| (PREDICTED: uncharacterized protein LOC107411246 [Ziziphus jujuba])

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-09
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 1


Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 57
          M IQR+E+C+ELL+MAI FV+VVAE+VG VIH+   P  + ++    P+PF+GFYP
Sbjct: 1  MVIQRIEMCVELLKMAIEFVIVVAEAVGIVIHQNMSPAFIRSSAYPTPLPFIGFYP 56

[Close]

BLAST of Csa7G074910.1 vs. NCBI nr
Match: gi|763765151|gb|KJB32405.1| (hypothetical protein B456_005G239600 [Gossypium raimondii])

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-06
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGG-RVPVPFVGFYP 57
          M +Q+LE+C+EL+++A+ FVVVVAE+VG VIH+   P  +  +     PVP VGF P
Sbjct: 1  MVLQKLEMCVELMKLAVEFVVVVAEAVGIVIHQNHSPPVMTASRSFATPVPLVGFLP 57

The following BLAST results are available for this feature:

BLAST of Csa7G074910.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3A1_CUCSA	1.2e-23	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G074910 PE=4 SV=1	[more]
A0A0D2SML3_GOSRA	3.0e-06	49.12	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G239600 PE=4 SV=1	[more]

BLAST of Csa7G074910.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19030.1	7.8e-06	44.83	unknown protein	[more]

BLAST of Csa7G074910.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109833\|ref\|XP_008454905.1\|	1.7e-23	100.00	PREDICTED: uncharacterized protein LOC103495210 [Cucumis melo]	[more]
gi\|1009115522\|ref\|XP_015874275.1\|	2.4e-09	55.36	PREDICTED: uncharacterized protein LOC107411246 [Ziziphus jujuba]	[more]
gi\|763765151\|gb\|KJB32405.1\|	4.3e-06	49.12	hypothetical protein B456_005G239600 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G074910	Csa7G074910	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa7G074910.1	Csa7G074910.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa7G074910.1.utr5p1	Csa7G074910.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa7G074910.1.cds1	Csa7G074910.1.cds1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa7G074910.1.utr3p1	Csa7G074910.1.utr3p1	three_prime_UTR