Csa6G527070.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G527070.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 28895608 .. 28896765 (+)
Sequence length213
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACAAGCGTGAGTGTGAGAGCTTGTTGGAGTAGGTCACGAACATGCAACCAATATCTTAAAGTTAGTTTTTATGTTAACCAACAAGTCAAGTCGATCAATTTTCTAGATTGATTACTATCGACAATTAGTAAAGTTTATATCAAATGACCAACCAACAACAACTTCGTTTGGTTTTGGTAAAACTAATCAGGTTGTGCTTGAACTCCATTTTCAAATAACTAAATATAAAAAAAAAAGTTTTAAAAAATAACAACGAGCTTGACAACTACAACAAATGGTTTTTGAAAAAAAAAAACTCGTTTATAAAACAAGGTGTAAAATACATTTAAAACTCTTTAGAAAAATTAATTTTAAGTATTTAGTGATTAGTCTCCTTAATTCGTACGAATCATTCAGATCACCCGTGTAATCATTCAGGTTGTGCGACCATCAAAAGATAATCACTATCCACTTTTGATCATCCTCAACAAACATGAAGTCACCATTTTTGGTTTCCAGCTAACAATCAACTTTAGTTTGTTATTTATTTATTTTTCAACCTTGTAGGCTAACTTCTGATCATTTTAAAAAAATATATTCAATGTTATATATCTTTACCTGAAAATTATCATATGATCATTTAACAAAGTTCAATAAAAAGTAACCTAAAAGAACTAAATTTAAAACTCAGTAAAAGAACTGAACTAAAATTAAAGTAATACACCAAAATGGTATTTTAAGGTTTGTTTTATTTTTTAAAAGAATAAATTCCTTAATTTTAATTTCGTGCCATTCGTTATCCTCAGTATTATCTCCCTCCAAAACCGACCGCTCGATCCAGCCCTCTCTCCCATCTCCGCCGGTAGTTTAACTGAGGCCGGAAAAGCCCTACGCTCGCAGGGGCTTCTCACCTCACTCATCTCTCCACAGCAAAGTTCATCCCGTACCAGTACGTTTCCTCCACTCTCTTATCTTTCTTCGTCGACATTTAATCGCGTATGAAGGAAAACGAAAGTACTTATTTCTGCGGAAACAAGGATCAATAGTTGATATTAACTGTTGCTATAACTTTGCCACTTTTGTTAGGTGTTTAGCGGTGATGTTATACGTAAGTGTTTCATGTGGAGTGAATTTTCATTACCAAACTCTGTTTTTACAGAAAAAGAAGATTGA

mRNA sequence

ATGGCTACAAGCAATAAATTCCTTAATTTTAATTTCGTGCCATTCGTTATCCTCAGTATTATCTCCCTCCAAAACCGACCGCTCGATCCAGCCCTCTCTCCCATCTCCGCCGGTAGTTTAACTGAGGCCGGAAAAGCCCTACGCTCGCAGGGGCTTCTCACCTCACTCATCTCTCCACAGCAAAGTTCATCCCGTACCAAAAAAGAAGATTGA

Coding sequence (CDS)

ATGGCTACAAGCAATAAATTCCTTAATTTTAATTTCGTGCCATTCGTTATCCTCAGTATTATCTCCCTCCAAAACCGACCGCTCGATCCAGCCCTCTCTCCCATCTCCGCCGGTAGTTTAACTGAGGCCGGAAAAGCCCTACGCTCGCAGGGGCTTCTCACCTCACTCATCTCTCCACAGCAAAGTTCATCCCGTACCAAAAAAGAAGATTGA

Protein sequence

MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQQSSSRTKKED*
Homology
[Close]
BLAST of Csa6G527070.1 vs. TrEMBL
Match: A0A0A0KL31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G527070 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.1e-29
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQ 60
          MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQ
Sbjct: 1  MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQ 60

Query: 61 QSSSRTKKED 71
          QSSSRTKKED
Sbjct: 61 QSSSRTKKED 70

[Close]
BLAST of Csa6G527070.1 vs. NCBI nr
Match: gi|700194320|gb|KGN49524.1| (hypothetical protein Csa_6G527070 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 4.5e-29
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQ 60
          MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQ
Sbjct: 1  MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQ 60

Query: 61 QSSSRTKKED 71
          QSSSRTKKED
Sbjct: 61 QSSSRTKKED 70

The following BLAST results are available for this feature:
BLAST of Csa6G527070.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL31_CUCSA3.1e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G527070 PE=4 SV=1[more]
BLAST of Csa6G527070.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194320|gb|KGN49524.1|4.5e-29100.00hypothetical protein Csa_6G527070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G527070Csa6G527070gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G527070.1Csa6G527070.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G527070.1.cds1Csa6G527070.1.cds1CDS
Csa6G527070.1.cds2Csa6G527070.1.cds2CDS
Csa6G527070.1.cds3Csa6G527070.1.cds3CDS