Csa6G527070 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G527070
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 28895608 .. 28896765 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACAAGCGTGAGTGTGAGAGCTTGTTGGAGTAGGTCACGAACATGCAACCAATATCTTAAAGTTAGTTTTTATGTTAACCAACAAGTCAAGTCGATCAATTTTCTAGATTGATTACTATCGACAATTAGTAAAGTTTATATCAAATGACCAACCAACAACAACTTCGTTTGGTTTTGGTAAAACTAATCAGGTTGTGCTTGAACTCCATTTTCAAATAACTAAATATAAAAAAAAAAGTTTTAAAAAATAACAACGAGCTTGACAACTACAACAAATGGTTTTTGAAAAAAAAAAACTCGTTTATAAAACAAGGTGTAAAATACATTTAAAACTCTTTAGAAAAATTAATTTTAAGTATTTAGTGATTAGTCTCCTTAATTCGTACGAATCATTCAGATCACCCGTGTAATCATTCAGGTTGTGCGACCATCAAAAGATAATCACTATCCACTTTTGATCATCCTCAACAAACATGAAGTCACCATTTTTGGTTTCCAGCTAACAATCAACTTTAGTTTGTTATTTATTTATTTTTCAACCTTGTAGGCTAACTTCTGATCATTTTAAAAAAATATATTCAATGTTATATATCTTTACCTGAAAATTATCATATGATCATTTAACAAAGTTCAATAAAAAGTAACCTAAAAGAACTAAATTTAAAACTCAGTAAAAGAACTGAACTAAAATTAAAGTAATACACCAAAATGGTATTTTAAGGTTTGTTTTATTTTTTAAAAGAATAAATTCCTTAATTTTAATTTCGTGCCATTCGTTATCCTCAGTATTATCTCCCTCCAAAACCGACCGCTCGATCCAGCCCTCTCTCCCATCTCCGCCGGTAGTTTAACTGAGGCCGGAAAAGCCCTACGCTCGCAGGGGCTTCTCACCTCACTCATCTCTCCACAGCAAAGTTCATCCCGTACCAGTACGTTTCCTCCACTCTCTTATCTTTCTTCGTCGACATTTAATCGCGTATGAAGGAAAACGAAAGTACTTATTTCTGCGGAAACAAGGATCAATAGTTGATATTAACTGTTGCTATAACTTTGCCACTTTTGTTAGGTGTTTAGCGGTGATGTTATACGTAAGTGTTTCATGTGGAGTGAATTTTCATTACCAAACTCTGTTTTTACAGAAAAAGAAGATTGA

mRNA sequence

ATGGCTACAAGCAATAAATTCCTTAATTTTAATTTCGTGCCATTCGTTATCCTCAGTATTATCTCCCTCCAAAACCGACCGCTCGATCCAGCCCTCTCTCCCATCTCCGCCGGTAGTTTAACTGAGGCCGGAAAAGCCCTACGCTCGCAGGGGCTTCTCACCTCACTCATCTCTCCACAGCAAAGTTCATCCCGTACCAAAAAAGAAGATTGA

Coding sequence (CDS)

ATGGCTACAAGCAATAAATTCCTTAATTTTAATTTCGTGCCATTCGTTATCCTCAGTATTATCTCCCTCCAAAACCGACCGCTCGATCCAGCCCTCTCTCCCATCTCCGCCGGTAGTTTAACTGAGGCCGGAAAAGCCCTACGCTCGCAGGGGCTTCTCACCTCACTCATCTCTCCACAGCAAAGTTCATCCCGTACCAAAAAAGAAGATTGA

Protein sequence

MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQQSSSRTKKED*
Homology
[Close]
BLAST of Csa6G527070 vs. TrEMBL
Match: A0A0A0KL31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G527070 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.1e-29
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQ 60
          MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQ
Sbjct: 1  MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQ 60

Query: 61 QSSSRTKKED 71
          QSSSRTKKED
Sbjct: 61 QSSSRTKKED 70

[Close]
BLAST of Csa6G527070 vs. NCBI nr
Match: gi|700194320|gb|KGN49524.1| (hypothetical protein Csa_6G527070 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 4.5e-29
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQ 60
          MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQ
Sbjct: 1  MATSNKFLNFNFVPFVILSIISLQNRPLDPALSPISAGSLTEAGKALRSQGLLTSLISPQ 60

Query: 61 QSSSRTKKED 71
          QSSSRTKKED
Sbjct: 61 QSSSRTKKED 70

The following BLAST results are available for this feature:
BLAST of Csa6G527070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL31_CUCSA3.1e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G527070 PE=4 SV=1[more]
BLAST of Csa6G527070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194320|gb|KGN49524.1|4.5e-29100.00hypothetical protein Csa_6G527070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G527070.1Csa6G527070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G527070Melon (DHL92) v3.5.1cumeB507
Csa6G527070Watermelon (Charleston Gray)cuwcgB432
Csa6G527070Watermelon (97103) v1cuwmB500
Csa6G527070Cucurbita pepo (Zucchini)cpecuB087
Csa6G527070Cucurbita pepo (Zucchini)cpecuB503
Csa6G527070Bottle gourd (USVL1VR-Ls)culsiB434
Csa6G527070Cucumber (Gy14) v2cgybcuB281
Csa6G527070Melon (DHL92) v3.6.1cumedB486
Csa6G527070Silver-seed gourdcarcuB0748
Csa6G527070Silver-seed gourdcarcuB1085
Csa6G527070Watermelon (97103) v2cuwmbB412
Csa6G527070Wax gourdcuwgoB619
Csa6G527070Cucumber (Gy14) v1cgycuB027
Csa6G527070Cucurbita maxima (Rimu)cmacuB678
Csa6G527070Cucurbita maxima (Rimu)cmacuB877
Csa6G527070Cucurbita moschata (Rifu)cmocuB667
Csa6G527070Cucurbita moschata (Rifu)cmocuB865