Csa6G497280.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G497280.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 24476962 .. 24477342 (+)
Sequence length	210

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACCATAAAAACTCTCTTTCTAATTCAAACGAACACAAATCCAAATGCTAATATCACATAAAATCTGCTCTGGGTTTTGATCTGCATGAAGTGAAAGATGAGCCAAGGCAAGTATGCTTATCCTTACTACGGTGAAGGTTACTATCAGGGGCCGCCGCCGCCTCCAGTGGTGGCGCCACCACAGTATGCAGCCGCTCCTCCCCAGGGGCCCGGATGCCTGGAGGCTTGGTAATTTCAATCATCTAAACCCCAACCTAATGTTTATAACAACCTAATATTTTCTCTCTATCTTATTTCTCAGTCTTGCTGCTCTGTGCTGCTGCTGTCTTGTTGACCAATGCTGCTGGTGCTGTGATCCATGGTGTCTGTTTGCCATCTAG

mRNA sequence

ATGAGCCAAGGCAAGTATGCTTATCCTTACTACGGTGAAGGTTACTATCAGGGGCCGCCGCCGCCTCCAGTGGTGGCGCCACCACAGTATGCAGCCGCTCCTCCCCAGGGGCCCGGATGCCTGGAGGCTTGTCTTGCTGCTCTGTGCTGCTGCTGTCTTGTTGACCAATGCTGCTGGTGCTGTGATCCATGGTGTCTGTTTGCCATCTAG

Coding sequence (CDS)

ATGAGCCAAGGCAAGTATGCTTATCCTTACTACGGTGAAGGTTACTATCAGGGGCCGCCGCCGCCTCCAGTGGTGGCGCCACCACAGTATGCAGCCGCTCCTCCCCAGGGGCCCGGATGCCTGGAGGCTTGTCTTGCTGCTCTGTGCTGCTGCTGTCTTGTTGACCAATGCTGCTGGTGCTGTGATCCATGGTGTCTGTTTGCCATCTAG

Protein sequence

MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWCCDPWCLFAI*

Homology

[Close]

BLAST of Csa6G497280.1 vs. Swiss-Prot
Match: CYT1A_ARATH (Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thaliana GN=At2g41420 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.6e-07
Identity = 29/58 (50.00%), Postives = 29/58 (50.00%), Query Frame = 1


Query: 3  QGKYAYPYYGEGY-YQGPPPP--PVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQC 58
          QG     Y  +GY  QG PPP  P   PP         PG LE CLAALCCCCL+D C
Sbjct: 40 QGYPPQGYPQQGYPQQGYPPPYAPQYPPPPQHQQQQSSPGFLEGCLAALCCCCLLDAC 97

[Close]

BLAST of Csa6G497280.1 vs. TrEMBL
Match: A0A0A0KGL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497280 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-39
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60
          MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC
Sbjct: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60

Query: 61 CDPWCLFAI 70
          CDPWCLFAI
Sbjct: 61 CDPWCLFAI 69

[Close]

BLAST of Csa6G497280.1 vs. TrEMBL
Match: A0A061DHF5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000918 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.8e-19
Identity = 47/68 (69.12%), Postives = 53/68 (77.94%), Query Frame = 1


Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQ-GPGCLEACLAALCCCCLVDQCCW 60
          MS  KYAYPY  +GYYQGPP   V+APPQYAA PP+ GPG LE CLAALCCCCL+D+C  
Sbjct: 1  MSDPKYAYPYPAQGYYQGPP---VMAPPQYAAPPPKRGPGFLEGCLAALCCCCLIDEC-- 60

Query: 61 CCDPWCLF 68
          CCDP  +F
Sbjct: 61 CCDPSIIF 63

[Close]

BLAST of Csa6G497280.1 vs. TrEMBL
Match: A0A0A9HH94_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.9e-19
Identity = 48/69 (69.57%), Postives = 53/69 (76.81%), Query Frame = 1


Query: 1  MSQGKYAYPYYGEGYYQGP-PPPPVVAPPQYAAAPPQG-PGCLEACLAALCCCCLVDQCC 60
          MS  KYAYPY  +GYYQGP   PPV+APPQYAA PP+  PG LE CLAALCCCCLVD+C 
Sbjct: 1  MSDPKYAYPYPAQGYYQGPYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCLVDEC- 60

Query: 61 WCCDPWCLF 68
           CCDP  +F
Sbjct: 61 -CCDPSIIF 67

[Close]

BLAST of Csa6G497280.1 vs. TrEMBL
Match: U5D7A4_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00046p00231970 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-18
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 1


Query: 1   MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60
           MS  KYAYPY  +GYYQGPP   V+APPQYAA PP+  G LE CLAALCCCCL+D+C  C
Sbjct: 66  MSDPKYAYPYPAQGYYQGPP---VMAPPQYAARPPRRAGFLEGCLAALCCCCLIDEC--C 125

Query: 61  CDPWCLF 68
           CDP  +F
Sbjct: 126 CDPSIIF 127

[Close]

BLAST of Csa6G497280.1 vs. TrEMBL
Match: A0A0A9IXJ4_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-18
Identity = 48/69 (69.57%), Postives = 52/69 (75.36%), Query Frame = 1


Query: 1  MSQGKYAYPYYGEGYYQGP-PPPPVVAPPQYAAAPPQG-PGCLEACLAALCCCCLVDQCC 60
          MS  KYAYPY  +GYYQGP   PPV APPQYAA PP+  PG LE CLAALCCCCLVD+C 
Sbjct: 1  MSDPKYAYPYPAQGYYQGPYQGPPVQAPPQYAAPPPRRQPGFLEGCLAALCCCCLVDEC- 60

Query: 61 WCCDPWCLF 68
           CCDP  +F
Sbjct: 61 -CCDPSVIF 67

[Close]

BLAST of Csa6G497280.1 vs. TAIR10
Match: AT4G33660.1 (AT4G33660.1 unknown protein)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-16
Identity = 41/72 (56.94%), Postives = 40/72 (55.56%), Query Frame = 1


Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGP---------GCLEACLAALCCC 60
          MS  KYAYPY   G Y   PPPPV  PPQY   PP  P         G LE  LAALCCC
Sbjct: 1  MSDPKYAYPYPAPGNYPQGPPPPVGVPPQYYPPPPPPPPPPPPPRKVGFLEGLLAALCCC 60

Query: 61 CLVDQCCWCCDP 64
          CLVD+C  CCDP
Sbjct: 61 CLVDEC--CCDP 70

[Close]

BLAST of Csa6G497280.1 vs. TAIR10
Match: AT5G67600.1 (AT5G67600.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 9.2e-09
Identity = 30/55 (54.55%), Postives = 31/55 (56.36%), Query Frame = 1


Query: 6  YAYPYYGEGY-YQGPPPPPVVAPPQYAAAPPQ--GPGCLEACLAALCCCCLVDQC 58
          Y  P Y +GY  QG PPP      QY+ AP Q    G LE CLAALCCCCL+D C
Sbjct: 33 YPPPGYAQGYPAQGYPPP------QYSQAPQQKQNAGMLEGCLAALCCCCLLDAC 81

[Close]

BLAST of Csa6G497280.1 vs. TAIR10
Match: AT2G41420.1 (AT2G41420.1 proline-rich family protein)

HSP 1 Score: 55.1 bits (131), Expect = 2.1e-08
Identity = 29/58 (50.00%), Postives = 29/58 (50.00%), Query Frame = 1


Query: 3  QGKYAYPYYGEGY-YQGPPPP--PVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQC 58
          QG     Y  +GY  QG PPP  P   PP         PG LE CLAALCCCCL+D C
Sbjct: 40 QGYPPQGYPQQGYPQQGYPPPYAPQYPPPPQHQQQQSSPGFLEGCLAALCCCCLLDAC 97

[Close]

BLAST of Csa6G497280.1 vs. TAIR10
Match: AT2G32190.1 (AT2G32190.1 unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 5.6e-06
Identity = 25/62 (40.32%), Postives = 28/62 (45.16%), Query Frame = 1


Query: 2  SQGKYAYPYYGEGYYQGPPPP--PVVAPPQYAAAPPQ----GPGCLEACLAALCCCCLVD 58
          S G Y  P    G Y  PPP   P         AP +    G G L+ CLAA+CCCC++D
Sbjct: 9  SSGAYPTPPVSTGPYMTPPPLGYPTSDISHATVAPVETKSKGDGFLKGCLAAMCCCCVLD 68

[Close]

BLAST of Csa6G497280.1 vs. NCBI nr
Match: gi|700193474|gb|KGN48678.1| (hypothetical protein Csa_6G497280 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 1.6e-39
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60
          MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC
Sbjct: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60

Query: 61 CDPWCLFAI 70
          CDPWCLFAI
Sbjct: 61 CDPWCLFAI 69

[Close]

BLAST of Csa6G497280.1 vs. NCBI nr
Match: gi|590706350|ref|XP_007047698.1| (Uncharacterized protein TCM_000918 [Theobroma cacao])

HSP 1 Score: 101.7 bits (252), Expect = 5.4e-19
Identity = 47/68 (69.12%), Postives = 53/68 (77.94%), Query Frame = 1


Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQ-GPGCLEACLAALCCCCLVDQCCW 60
          MS  KYAYPY  +GYYQGPP   V+APPQYAA PP+ GPG LE CLAALCCCCL+D+C  
Sbjct: 1  MSDPKYAYPYPAQGYYQGPP---VMAPPQYAAPPPKRGPGFLEGCLAALCCCCLIDEC-- 60

Query: 61 CCDPWCLF 68
          CCDP  +F
Sbjct: 61 CCDPSIIF 63

[Close]

BLAST of Csa6G497280.1 vs. NCBI nr
Match: gi|548860514|gb|ERN18100.1| (hypothetical protein AMTR_s00046p00231970 [Amborella trichopoda])

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-18
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 1


Query: 1   MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60
           MS  KYAYPY  +GYYQGPP   V+APPQYAA PP+  G LE CLAALCCCCL+D+C  C
Sbjct: 66  MSDPKYAYPYPAQGYYQGPP---VMAPPQYAARPPRRAGFLEGCLAALCCCCLIDEC--C 125

Query: 61  CDPWCLF 68
           CDP  +F
Sbjct: 126 CDPSIIF 127

[Close]

BLAST of Csa6G497280.1 vs. NCBI nr
Match: gi|728826639|gb|KHG06826.1| (hypothetical protein F383_33724 [Gossypium arboreum])

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-18
Identity = 47/68 (69.12%), Postives = 52/68 (76.47%), Query Frame = 1


Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQG-PGCLEACLAALCCCCLVDQCCW 60
          MS  KYAYPY  +GYYQGPP   VVAPPQYAA PP+  PG LE CLAALCCCCL+D+C  
Sbjct: 1  MSDPKYAYPYPAQGYYQGPP---VVAPPQYAAPPPRREPGFLEGCLAALCCCCLIDEC-- 60

Query: 61 CCDPWCLF 68
          CCDP  +F
Sbjct: 61 CCDPSIIF 63

[Close]

BLAST of Csa6G497280.1 vs. NCBI nr
Match: gi|944222203|gb|KQK86607.1| (hypothetical protein SETIT_037590mg [Setaria italica])

HSP 1 Score: 99.4 bits (246), Expect = 2.7e-18
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 1


Query: 1   MSQGKYAYPYYGEGYYQGP-PPPPVVAPPQYAAAPPQG-PGCLEACLAALCCCCLVDQCC 60
           M+  KYAYPY  +GYYQGP   PPV+APPQYAAAPP+  P  LE CLAALCCCCL+D+C 
Sbjct: 131 MNDPKYAYPYPAQGYYQGPYQGPPVMAPPQYAAAPPRREPSFLEGCLAALCCCCLIDEC- 190

Query: 61  WCCDPWCLF 68
            CCDP  +F
Sbjct: 191 -CCDPSIIF 197

The following BLAST results are available for this feature:

BLAST of Csa6G497280.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CYT1A_ARATH	3.6e-07	50.00	Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thali...	[more]

BLAST of Csa6G497280.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGL9_CUCSA	1.1e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497280 PE=4 SV=1	[more]
A0A061DHF5_THECC	3.8e-19	69.12	Uncharacterized protein OS=Theobroma cacao GN=TCM_000918 PE=4 SV=1	[more]
A0A0A9HH94_ARUDO	4.9e-19	69.57	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]
U5D7A4_AMBTC	1.1e-18	67.16	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00046p00231970 PE=4 SV=...	[more]
A0A0A9IXJ4_ARUDO	1.1e-18	69.57	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]

BLAST of Csa6G497280.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33660.1	1.2e-16	56.94	unknown protein	[more]
AT5G67600.1	9.2e-09	54.55	unknown protein	[more]
AT2G41420.1	2.1e-08	50.00	proline-rich family protein	[more]
AT2G32190.1	5.6e-06	40.32	unknown protein	[more]

BLAST of Csa6G497280.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193474\|gb\|KGN48678.1\|	1.6e-39	100.00	hypothetical protein Csa_6G497280 [Cucumis sativus]	[more]
gi\|590706350\|ref\|XP_007047698.1\|	5.4e-19	69.12	Uncharacterized protein TCM_000918 [Theobroma cacao]	[more]
gi\|548860514\|gb\|ERN18100.1\|	1.6e-18	67.16	hypothetical protein AMTR_s00046p00231970 [Amborella trichopoda]	[more]
gi\|728826639\|gb\|KHG06826.1\|	2.1e-18	69.12	hypothetical protein F383_33724 [Gossypium arboreum]	[more]
gi\|944222203\|gb\|KQK86607.1\|	2.7e-18	66.67	hypothetical protein SETIT_037590mg [Setaria italica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR028144	CYSTM_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G497280	Csa6G497280	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa6G497280.1	Csa6G497280.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G497280.1.utr5p1	Csa6G497280.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G497280.1.cds1	Csa6G497280.1.cds1	CDS
Csa6G497280.1.cds2	Csa6G497280.1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028144	Cysteine-rich transmembrane CYSTM domain	PFAM	PF12734	CYSTM	coord: 14..58 score: 1.