Csa6G497280 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G497280
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 24476962 .. 24477342 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACCATAAAAACTCTCTTTCTAATTCAAACGAACACAAATCCAAATGCTAATATCACATAAAATCTGCTCTGGGTTTTGATCTGCATGAAGTGAAAGATGAGCCAAGGCAAGTATGCTTATCCTTACTACGGTGAAGGTTACTATCAGGGGCCGCCGCCGCCTCCAGTGGTGGCGCCACCACAGTATGCAGCCGCTCCTCCCCAGGGGCCCGGATGCCTGGAGGCTTGGTAATTTCAATCATCTAAACCCCAACCTAATGTTTATAACAACCTAATATTTTCTCTCTATCTTATTTCTCAGTCTTGCTGCTCTGTGCTGCTGCTGTCTTGTTGACCAATGCTGCTGGTGCTGTGATCCATGGTGTCTGTTTGCCATCTAG

mRNA sequence

ATGAGCCAAGGCAAGTATGCTTATCCTTACTACGGTGAAGGTTACTATCAGGGGCCGCCGCCGCCTCCAGTGGTGGCGCCACCACAGTATGCAGCCGCTCCTCCCCAGGGGCCCGGATGCCTGGAGGCTTGTCTTGCTGCTCTGTGCTGCTGCTGTCTTGTTGACCAATGCTGCTGGTGCTGTGATCCATGGTGTCTGTTTGCCATCTAG

Coding sequence (CDS)

ATGAGCCAAGGCAAGTATGCTTATCCTTACTACGGTGAAGGTTACTATCAGGGGCCGCCGCCGCCTCCAGTGGTGGCGCCACCACAGTATGCAGCCGCTCCTCCCCAGGGGCCCGGATGCCTGGAGGCTTGTCTTGCTGCTCTGTGCTGCTGCTGTCTTGTTGACCAATGCTGCTGGTGCTGTGATCCATGGTGTCTGTTTGCCATCTAG

Protein sequence

MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWCCDPWCLFAI*
Homology
[Close]
BLAST of Csa6G497280 vs. Swiss-Prot
Match: CYT1A_ARATH (Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thaliana GN=At2g41420 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.6e-07
Identity = 29/58 (50.00%), Postives = 29/58 (50.00%), Query Frame = 1 

Query: 3  QGKYAYPYYGEGY-YQGPPPP--PVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQC 58
          QG     Y  +GY  QG PPP  P   PP         PG LE CLAALCCCCL+D C
Sbjct: 40 QGYPPQGYPQQGYPQQGYPPPYAPQYPPPPQHQQQQSSPGFLEGCLAALCCCCLLDAC 97

[Close]
BLAST of Csa6G497280 vs. TrEMBL
Match: A0A0A0KGL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497280 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-39
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60
          MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC
Sbjct: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60

Query: 61 CDPWCLFAI 70
          CDPWCLFAI
Sbjct: 61 CDPWCLFAI 69

[Close]
BLAST of Csa6G497280 vs. TrEMBL
Match: A0A061DHF5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000918 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.8e-19
Identity = 47/68 (69.12%), Postives = 53/68 (77.94%), Query Frame = 1 

Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQ-GPGCLEACLAALCCCCLVDQCCW 60
          MS  KYAYPY  +GYYQGPP   V+APPQYAA PP+ GPG LE CLAALCCCCL+D+C  
Sbjct: 1  MSDPKYAYPYPAQGYYQGPP---VMAPPQYAAPPPKRGPGFLEGCLAALCCCCLIDEC-- 60

Query: 61 CCDPWCLF 68
          CCDP  +F
Sbjct: 61 CCDPSIIF 63

[Close]
BLAST of Csa6G497280 vs. TrEMBL
Match: A0A0A9HH94_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.9e-19
Identity = 48/69 (69.57%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 1  MSQGKYAYPYYGEGYYQGP-PPPPVVAPPQYAAAPPQG-PGCLEACLAALCCCCLVDQCC 60
          MS  KYAYPY  +GYYQGP   PPV+APPQYAA PP+  PG LE CLAALCCCCLVD+C 
Sbjct: 1  MSDPKYAYPYPAQGYYQGPYQGPPVMAPPQYAAPPPRRQPGFLEGCLAALCCCCLVDEC- 60

Query: 61 WCCDPWCLF 68
           CCDP  +F
Sbjct: 61 -CCDPSIIF 67

[Close]
BLAST of Csa6G497280 vs. TrEMBL
Match: U5D7A4_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00046p00231970 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-18
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 1 

Query: 1   MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60
           MS  KYAYPY  +GYYQGPP   V+APPQYAA PP+  G LE CLAALCCCCL+D+C  C
Sbjct: 66  MSDPKYAYPYPAQGYYQGPP---VMAPPQYAARPPRRAGFLEGCLAALCCCCLIDEC--C 125

Query: 61  CDPWCLF 68
           CDP  +F
Sbjct: 126 CDPSIIF 127

[Close]
BLAST of Csa6G497280 vs. TrEMBL
Match: A0A0A9IXJ4_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-18
Identity = 48/69 (69.57%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 1  MSQGKYAYPYYGEGYYQGP-PPPPVVAPPQYAAAPPQG-PGCLEACLAALCCCCLVDQCC 60
          MS  KYAYPY  +GYYQGP   PPV APPQYAA PP+  PG LE CLAALCCCCLVD+C 
Sbjct: 1  MSDPKYAYPYPAQGYYQGPYQGPPVQAPPQYAAPPPRRQPGFLEGCLAALCCCCLVDEC- 60

Query: 61 WCCDPWCLF 68
           CCDP  +F
Sbjct: 61 -CCDPSVIF 67

[Close]
BLAST of Csa6G497280 vs. TAIR10
Match: AT4G33660.1 (AT4G33660.1 unknown protein)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-16
Identity = 41/72 (56.94%), Postives = 40/72 (55.56%), Query Frame = 1 

Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGP---------GCLEACLAALCCC 60
          MS  KYAYPY   G Y   PPPPV  PPQY   PP  P         G LE  LAALCCC
Sbjct: 1  MSDPKYAYPYPAPGNYPQGPPPPVGVPPQYYPPPPPPPPPPPPPRKVGFLEGLLAALCCC 60

Query: 61 CLVDQCCWCCDP 64
          CLVD+C  CCDP
Sbjct: 61 CLVDEC--CCDP 70

[Close]
BLAST of Csa6G497280 vs. TAIR10
Match: AT5G67600.1 (AT5G67600.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 9.2e-09
Identity = 30/55 (54.55%), Postives = 31/55 (56.36%), Query Frame = 1 

Query: 6  YAYPYYGEGY-YQGPPPPPVVAPPQYAAAPPQ--GPGCLEACLAALCCCCLVDQC 58
          Y  P Y +GY  QG PPP      QY+ AP Q    G LE CLAALCCCCL+D C
Sbjct: 33 YPPPGYAQGYPAQGYPPP------QYSQAPQQKQNAGMLEGCLAALCCCCLLDAC 81

[Close]
BLAST of Csa6G497280 vs. TAIR10
Match: AT2G41420.1 (AT2G41420.1 proline-rich family protein)

HSP 1 Score: 55.1 bits (131), Expect = 2.1e-08
Identity = 29/58 (50.00%), Postives = 29/58 (50.00%), Query Frame = 1 

Query: 3  QGKYAYPYYGEGY-YQGPPPP--PVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQC 58
          QG     Y  +GY  QG PPP  P   PP         PG LE CLAALCCCCL+D C
Sbjct: 40 QGYPPQGYPQQGYPQQGYPPPYAPQYPPPPQHQQQQSSPGFLEGCLAALCCCCLLDAC 97

[Close]
BLAST of Csa6G497280 vs. TAIR10
Match: AT2G32190.1 (AT2G32190.1 unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 5.6e-06
Identity = 25/62 (40.32%), Postives = 28/62 (45.16%), Query Frame = 1 

Query: 2  SQGKYAYPYYGEGYYQGPPPP--PVVAPPQYAAAPPQ----GPGCLEACLAALCCCCLVD 58
          S G Y  P    G Y  PPP   P         AP +    G G L+ CLAA+CCCC++D
Sbjct: 9  SSGAYPTPPVSTGPYMTPPPLGYPTSDISHATVAPVETKSKGDGFLKGCLAAMCCCCVLD 68

[Close]
BLAST of Csa6G497280 vs. NCBI nr
Match: gi|700193474|gb|KGN48678.1| (hypothetical protein Csa_6G497280 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 1.6e-39
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60
          MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC
Sbjct: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60

Query: 61 CDPWCLFAI 70
          CDPWCLFAI
Sbjct: 61 CDPWCLFAI 69

[Close]
BLAST of Csa6G497280 vs. NCBI nr
Match: gi|590706350|ref|XP_007047698.1| (Uncharacterized protein TCM_000918 [Theobroma cacao])

HSP 1 Score: 101.7 bits (252), Expect = 5.4e-19
Identity = 47/68 (69.12%), Postives = 53/68 (77.94%), Query Frame = 1 

Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQ-GPGCLEACLAALCCCCLVDQCCW 60
          MS  KYAYPY  +GYYQGPP   V+APPQYAA PP+ GPG LE CLAALCCCCL+D+C  
Sbjct: 1  MSDPKYAYPYPAQGYYQGPP---VMAPPQYAAPPPKRGPGFLEGCLAALCCCCLIDEC-- 60

Query: 61 CCDPWCLF 68
          CCDP  +F
Sbjct: 61 CCDPSIIF 63

[Close]
BLAST of Csa6G497280 vs. NCBI nr
Match: gi|548860514|gb|ERN18100.1| (hypothetical protein AMTR_s00046p00231970 [Amborella trichopoda])

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-18
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 1 

Query: 1   MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQGPGCLEACLAALCCCCLVDQCCWC 60
           MS  KYAYPY  +GYYQGPP   V+APPQYAA PP+  G LE CLAALCCCCL+D+C  C
Sbjct: 66  MSDPKYAYPYPAQGYYQGPP---VMAPPQYAARPPRRAGFLEGCLAALCCCCLIDEC--C 125

Query: 61  CDPWCLF 68
           CDP  +F
Sbjct: 126 CDPSIIF 127

[Close]
BLAST of Csa6G497280 vs. NCBI nr
Match: gi|728826639|gb|KHG06826.1| (hypothetical protein F383_33724 [Gossypium arboreum])

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-18
Identity = 47/68 (69.12%), Postives = 52/68 (76.47%), Query Frame = 1 

Query: 1  MSQGKYAYPYYGEGYYQGPPPPPVVAPPQYAAAPPQG-PGCLEACLAALCCCCLVDQCCW 60
          MS  KYAYPY  +GYYQGPP   VVAPPQYAA PP+  PG LE CLAALCCCCL+D+C  
Sbjct: 1  MSDPKYAYPYPAQGYYQGPP---VVAPPQYAAPPPRREPGFLEGCLAALCCCCLIDEC-- 60

Query: 61 CCDPWCLF 68
          CCDP  +F
Sbjct: 61 CCDPSIIF 63

[Close]
BLAST of Csa6G497280 vs. NCBI nr
Match: gi|944222203|gb|KQK86607.1| (hypothetical protein SETIT_037590mg [Setaria italica])

HSP 1 Score: 99.4 bits (246), Expect = 2.7e-18
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 1   MSQGKYAYPYYGEGYYQGP-PPPPVVAPPQYAAAPPQG-PGCLEACLAALCCCCLVDQCC 60
           M+  KYAYPY  +GYYQGP   PPV+APPQYAAAPP+  P  LE CLAALCCCCL+D+C 
Sbjct: 131 MNDPKYAYPYPAQGYYQGPYQGPPVMAPPQYAAAPPRREPSFLEGCLAALCCCCLIDEC- 190

Query: 61  WCCDPWCLF 68
            CCDP  +F
Sbjct: 191 -CCDPSIIF 197

The following BLAST results are available for this feature:
BLAST of Csa6G497280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CYT1A_ARATH3.6e-0750.00Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thali... [more]
BLAST of Csa6G497280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGL9_CUCSA1.1e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497280 PE=4 SV=1[more]
A0A061DHF5_THECC3.8e-1969.12Uncharacterized protein OS=Theobroma cacao GN=TCM_000918 PE=4 SV=1[more]
A0A0A9HH94_ARUDO4.9e-1969.57Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
U5D7A4_AMBTC1.1e-1867.16Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00046p00231970 PE=4 SV=... [more]
A0A0A9IXJ4_ARUDO1.1e-1869.57Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
BLAST of Csa6G497280 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G33660.11.2e-1656.94 unknown protein[more]
AT5G67600.19.2e-0954.55 unknown protein[more]
AT2G41420.12.1e-0850.00 proline-rich family protein[more]
AT2G32190.15.6e-0640.32 unknown protein[more]
BLAST of Csa6G497280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193474|gb|KGN48678.1|1.6e-39100.00hypothetical protein Csa_6G497280 [Cucumis sativus][more]
gi|590706350|ref|XP_007047698.1|5.4e-1969.12Uncharacterized protein TCM_000918 [Theobroma cacao][more]
gi|548860514|gb|ERN18100.1|1.6e-1867.16hypothetical protein AMTR_s00046p00231970 [Amborella trichopoda][more]
gi|728826639|gb|KHG06826.1|2.1e-1869.12hypothetical protein F383_33724 [Gossypium arboreum][more]
gi|944222203|gb|KQK86607.1|2.7e-1866.67hypothetical protein SETIT_037590mg [Setaria italica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR028144CYSTM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G497280.1Csa6G497280.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028144Cysteine-rich transmembrane CYSTM domainPFAMPF12734CYSTMcoord: 14..58
score: 1.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G497280Cucumber (Gy14) v2cgybcuB081
Csa6G497280Cucumber (Gy14) v2cgybcuB147
Csa6G497280Cucumber (Gy14) v2cgybcuB281
Csa6G497280Melon (DHL92) v3.6.1cumedB462
Csa6G497280Melon (DHL92) v3.6.1cumedB453
Csa6G497280Melon (DHL92) v3.6.1cumedB483
Csa6G497280Silver-seed gourdcarcuB0003
Csa6G497280Silver-seed gourdcarcuB0063
Csa6G497280Silver-seed gourdcarcuB0441
Csa6G497280Silver-seed gourdcarcuB0659
Csa6G497280Watermelon (97103) v2cuwmbB412
Csa6G497280Watermelon (97103) v2cuwmbB424
Csa6G497280Watermelon (97103) v2cuwmbB502
Csa6G497280Wax gourdcuwgoB625
Csa6G497280Wax gourdcuwgoB632
Csa6G497280Wax gourdcuwgoB647
Csa6G497280Cucumber (Chinese Long) v2cucuB073
Csa6G497280Cucumber (Chinese Long) v2cucuB122
Csa6G497280Cucumber (Gy14) v1cgycuB452
Csa6G497280Cucumber (Gy14) v1cgycuB121
Csa6G497280Cucumber (Gy14) v1cgycuB242
Csa6G497280Cucurbita maxima (Rimu)cmacuB192
Csa6G497280Cucurbita maxima (Rimu)cmacuB681
Csa6G497280Cucurbita maxima (Rimu)cmacuB877
Csa6G497280Cucurbita moschata (Rifu)cmocuB177
Csa6G497280Cucurbita moschata (Rifu)cmocuB670
Csa6G497280Cucurbita moschata (Rifu)cmocuB865
Csa6G497280Melon (DHL92) v3.5.1cumeB471
Csa6G497280Melon (DHL92) v3.5.1cumeB482
Csa6G497280Melon (DHL92) v3.5.1cumeB503
Csa6G497280Watermelon (Charleston Gray)cuwcgB431
Csa6G497280Watermelon (Charleston Gray)cuwcgB432
Csa6G497280Watermelon (Charleston Gray)cuwcgB511
Csa6G497280Watermelon (97103) v1cuwmB472
Csa6G497280Watermelon (97103) v1cuwmB500
Csa6G497280Watermelon (97103) v1cuwmB535
Csa6G497280Cucurbita pepo (Zucchini)cpecuB085
Csa6G497280Cucurbita pepo (Zucchini)cpecuB123
Csa6G497280Cucurbita pepo (Zucchini)cpecuB503
Csa6G497280Cucurbita pepo (Zucchini)cpecuB839
Csa6G497280Bottle gourd (USVL1VR-Ls)culsiB434
Csa6G497280Bottle gourd (USVL1VR-Ls)culsiB455
Csa6G497280Bottle gourd (USVL1VR-Ls)culsiB483