Csa6G490070.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G490070.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 23200277 .. 23200615 (+)
Sequence length339
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGCAGTCAATTCTTATGAACACTCACAGAACAAGACTTGTTTTTCTCGTGATGCAATTGATTCGCGGGATGCTAACGCGATATATCTTCCCAATCTCACGCCATTCTTGGCATTTTTAGTGGCCTGCTGTACAGAATACTTGACTTGCGGTTTCAGGAGACAAGAAAATGCTCAAGTGGAATCATTTTACATTCCAAAGATGGAGTATCTATCGGATATTAACTCTTCTTGGACGTATGGCCATGGCTGCTTCACAGCGGCCGTCAGGATTGGCAAGTTATACCTCTTAATTTGGTTTATATATCAACGTATCGATCTCTACAGCATGTTTTAA

mRNA sequence

ATGTATGCAGTCAATTCTTATGAACACTCACAGAACAAGACTTGTTTTTCTCGTGATGCAATTGATTCGCGGGATGCTAACGCGATATATCTTCCCAATCTCACGCCATTCTTGGCATTTTTAGTGGCCTGCTGTACAGAATACTTGACTTGCGGTTTCAGGAGACAAGAAAATGCTCAAGTGGAATCATTTTACATTCCAAAGATGGAGTATCTATCGGATATTAACTCTTCTTGGACGTATGGCCATGGCTGCTTCACAGCGGCCGTCAGGATTGGCAAGTTATACCTCTTAATTTGGTTTATATATCAACGTATCGATCTCTACAGCATGTTTTAA

Coding sequence (CDS)

ATGTATGCAGTCAATTCTTATGAACACTCACAGAACAAGACTTGTTTTTCTCGTGATGCAATTGATTCGCGGGATGCTAACGCGATATATCTTCCCAATCTCACGCCATTCTTGGCATTTTTAGTGGCCTGCTGTACAGAATACTTGACTTGCGGTTTCAGGAGACAAGAAAATGCTCAAGTGGAATCATTTTACATTCCAAAGATGGAGTATCTATCGGATATTAACTCTTCTTGGACGTATGGCCATGGCTGCTTCACAGCGGCCGTCAGGATTGGCAAGTTATACCTCTTAATTTGGTTTATATATCAACGTATCGATCTCTACAGCATGTTTTAA

Protein sequence

MYAVNSYEHSQNKTCFSRDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQVESFYIPKMEYLSDINSSWTYGHGCFTAAVRIGKLYLLIWFIYQRIDLYSMF*
Homology
[Close]
BLAST of Csa6G490070.1 vs. TrEMBL
Match: A0A0A0KJG6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490070 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 4.2e-60
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 

Query: 1   MYAVNSYEHSQNKTCFSRDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQ 60
           MYAVNSYEHSQNKTCFSRDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQ
Sbjct: 1   MYAVNSYEHSQNKTCFSRDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQ 60

Query: 61  VESFYIPKMEYLSDINSSWTYGHGCFTAAVRIGKLYLLIWFIYQRIDLYSMF 113
           VESFYIPKMEYLSDINSSWTYGHGCFTAAVRIGKLYLLIWFIYQRIDLYSMF
Sbjct: 61  VESFYIPKMEYLSDINSSWTYGHGCFTAAVRIGKLYLLIWFIYQRIDLYSMF 112

[Close]
BLAST of Csa6G490070.1 vs. NCBI nr
Match: gi|700193288|gb|KGN48492.1| (hypothetical protein Csa_6G490070 [Cucumis sativus])

HSP 1 Score: 238.4 bits (607), Expect = 6.0e-60
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 

Query: 1   MYAVNSYEHSQNKTCFSRDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQ 60
           MYAVNSYEHSQNKTCFSRDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQ
Sbjct: 1   MYAVNSYEHSQNKTCFSRDAIDSRDANAIYLPNLTPFLAFLVACCTEYLTCGFRRQENAQ 60

Query: 61  VESFYIPKMEYLSDINSSWTYGHGCFTAAVRIGKLYLLIWFIYQRIDLYSMF 113
           VESFYIPKMEYLSDINSSWTYGHGCFTAAVRIGKLYLLIWFIYQRIDLYSMF
Sbjct: 61  VESFYIPKMEYLSDINSSWTYGHGCFTAAVRIGKLYLLIWFIYQRIDLYSMF 112

The following BLAST results are available for this feature:
BLAST of Csa6G490070.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJG6_CUCSA4.2e-60100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490070 PE=4 SV=1[more]
BLAST of Csa6G490070.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193288|gb|KGN48492.1|6.0e-60100.00hypothetical protein Csa_6G490070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G490070Csa6G490070gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G490070.1Csa6G490070.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G490070.1.cds1Csa6G490070.1.cds1CDS