Csa6G450950.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G450950.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 21454053 .. 21454430 (+)
Sequence length285
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTTAAGCTCACCAGCCTTGTTGTAAGGAGGGCATGCATGGCTTATGGAGTTGGAGCATGTGACTTTAATAGCGTCTGTAATATTATATCTATTTTCACTTAATTCAAGCTGTGATTTTATGATCTTATTTTGATTATTGTGATATATGTTTTGAGCAATTCGAAGGTAGAATGTGGTGATGATGTCGATTTGGAGCTAATTCGAGCAAAACGATGTCAACCGAAGCAAATGAGTAATGAAATGAAGCCAATTAGGCTTTTGTCTCGTAGCGCAGTAATTGTCCTACGGCGCTATGCGTGGTGTTGTAAGATAGAAGAGATTATTATTCACGAAAATGATGTGGCACCATCTCCGAGTGTCACGGTACTCTAA

mRNA sequence

ATGGGTTTTAAGCTCACCAGCCTTGTTGTAAGGAGGGCATGCATGGCTTATGGAGTTGGAGCATGTGACTTTAATAGCGTAGAATGTGGTGATGATGTCGATTTGGAGCTAATTCGAGCAAAACGATGTCAACCGAAGCAAATGAGTAATGAAATGAAGCCAATTAGGCTTTTGTCTCGTAGCGCAGTAATTGTCCTACGGCGCTATGCGTGGTGTTGTAAGATAGAAGAGATTATTATTCACGAAAATGATGTGGCACCATCTCCGAGTGTCACGGTACTCTAA

Coding sequence (CDS)

ATGGGTTTTAAGCTCACCAGCCTTGTTGTAAGGAGGGCATGCATGGCTTATGGAGTTGGAGCATGTGACTTTAATAGCGTAGAATGTGGTGATGATGTCGATTTGGAGCTAATTCGAGCAAAACGATGTCAACCGAAGCAAATGAGTAATGAAATGAAGCCAATTAGGCTTTTGTCTCGTAGCGCAGTAATTGTCCTACGGCGCTATGCGTGGTGTTGTAAGATAGAAGAGATTATTATTCACGAAAATGATGTGGCACCATCTCCGAGTGTCACGGTACTCTAA

Protein sequence

MGFKLTSLVVRRACMAYGVGACDFNSVECGDDVDLELIRAKRCQPKQMSNEMKPIRLLSRSAVIVLRRYAWCCKIEEIIIHENDVAPSPSVTVL*
Homology
[Close]
BLAST of Csa6G450950.1 vs. TrEMBL
Match: A0A0A0KKF0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G450950 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MGFKLTSLVVRRACMAYGVGACDFNSVECGDDVDLELIRAKRCQPKQMSNEMKPIRLLSR 60
          MGFKLTSLVVRRACMAYGVGACDFNSVECGDDVDLELIRAKRCQPKQMSNEMKPIRLLSR
Sbjct: 1  MGFKLTSLVVRRACMAYGVGACDFNSVECGDDVDLELIRAKRCQPKQMSNEMKPIRLLSR 60

Query: 61 SAVIVLRRYAWCCKIEEIIIHENDVAPSPSVTVL 95
          SAVIVLRRYAWCCKIEEIIIHENDVAPSPSVTVL
Sbjct: 61 SAVIVLRRYAWCCKIEEIIIHENDVAPSPSVTVL 94

[Close]
BLAST of Csa6G450950.1 vs. NCBI nr
Match: gi|700193037|gb|KGN48241.1| (hypothetical protein Csa_6G450950 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MGFKLTSLVVRRACMAYGVGACDFNSVECGDDVDLELIRAKRCQPKQMSNEMKPIRLLSR 60
          MGFKLTSLVVRRACMAYGVGACDFNSVECGDDVDLELIRAKRCQPKQMSNEMKPIRLLSR
Sbjct: 1  MGFKLTSLVVRRACMAYGVGACDFNSVECGDDVDLELIRAKRCQPKQMSNEMKPIRLLSR 60

Query: 61 SAVIVLRRYAWCCKIEEIIIHENDVAPSPSVTVL 95
          SAVIVLRRYAWCCKIEEIIIHENDVAPSPSVTVL
Sbjct: 61 SAVIVLRRYAWCCKIEEIIIHENDVAPSPSVTVL 94

The following BLAST results are available for this feature:
BLAST of Csa6G450950.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKF0_CUCSA1.3e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G450950 PE=4 SV=1[more]
BLAST of Csa6G450950.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193037|gb|KGN48241.1|1.9e-46100.00hypothetical protein Csa_6G450950 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G450950Csa6G450950gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G450950.1Csa6G450950.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G450950.1.cds1Csa6G450950.1.cds1CDS
Csa6G450950.1.cds2Csa6G450950.1.cds2CDS