Csa6G434370.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTCCTTCTCCTTCTCCCTTGCTTGCTTAGGAGGGTGAAGGTGAGAAAAAATATCAAAAGGTGAGTTTGGGTTGTTAACCTCTCAATTTAGTTCACCTTTGTTATTGTCTCATTAATTATATATATACTTATTGTTACTATATCAATCATCATGATATGTTGTGAGTTCTTTTACTATACCATCACGCGTGTTTAAGAAATGTTGGGTTTAGAATTTGGTGAAAGATGGTCGAGTGAGATTTGTTGTATGGATTGAAACTTAAGGCCGAGTGGTTAGACACTAAGTTGATTGTGAAGTTTGGAGTCAATATGTTGAAGTTAAGAAGTTCTATATTTGAGGTGTAGAGTTTGAAAAATAAAATTATTTGATAAATGTACAAACGCTTCCTAAATGATCACAAGAGAGACGTTTGTGTGTTTAAGAAATTAAAGTATTGGGTTTAAAGTGCAAGTTTAAGAAAATAGTTTATTATATGTTTAGAAATTGGTGCCGGATTGAGTGAGGTTTGTTTACGATTGAAACTTATGAGGTGTTTAGGCTCTAGGTTGAAAATTAAGAAGTTTATGTTTGAGATGTAGAGTTGTTAAGGTAAAATTACTCGATAAACGTAAATACAGTGGATAAAGAGAAGATAAAGTTTTTTGATAAATGTGTAAACTTAACACACAATTACCATTAAAATTCAATTGTTTAACACCGATATACATATAAAAAACAATCAAATAAATTAACAAACACTTAATTTTATTAACTCGATCATAATCGACACAATTTTTTAGTTTTCTTTTGTATGATTATTGTAGTAATGAAATCTGACACGTGCGAGGCATGTCATGTGACCCGATCGATAATGGGTCCACTCATAAATCATATTGGGCCGTTTATATTTCAGCCCATAGAAAACATTATGGGCCGAGCCCAATAATACTATTACTCTATTTTTTTCATTGATGTGATTTATAGTATAGTTTTTCATTTGCATATATCTTCACAGGTTTAATTTCATTTCAATATTTTCTATCCTAATTATACATTTTAATACCAATACTGCCTAATTTATTTCAACAATCATGATACCTAAGTAAATAAAGTTAAACATAACAATTTCACTCGTTTTCCACTCAGGGATGGATCCAAGCAATTCAAAAATCGATCCATCAGGTTCGTTTCAATTTTTTTCAAACTTTTAGATTTATCGTTAGTTTAATATAACCGTTTAGTGAACGATTGAAATATTTGTATAATAGAGTTTGAGGCGGTGCCTTCGGAGTTGAAAACCTTAGAAAGGGAGCTCGAGGAAAAGATGAAGAAGATGGAAGAAATGAAGAAGAAGATTGAGGGTAAGAAGGTTTGTTTAGAAAAGAAGAAGGATGGTGTGAAGTTTTCAAGGAAAGAAATGGAAGTTTTTAAAGGGTTATGTGGAAAATACAAGAGCTTGAGAAAGGAATACAATGAAGCATGGGAGAAAGAGAGAAGAGAATCCTAGGAAATGTGTAATTAATGACCAAAGACTTGAATGTCTCTAGCACATGTTATTTTAATTATTAATAAAGATCC ATGGATCCAAGCAATTCAAAAATCGATCCATCAGAGTTTGAGGCGGTGCCTTCGGAGTTGAAAACCTTAGAAAGGGAGCTCGAGGAAAAGATGAAGAAGATGGAAGAAATGAAGAAGAAGATTGAGGGTAAGAAGGTTTGTTTAGAAAAGAAGAAGGATGGTGTGAAGTTTTCAAGGAAAGAAATGGAAGTTTTTAAAGGGTTATGTGGAAAATACAAGAGCTTGAGAAAGGAATACAATGAAGCATGGGAGAAAGAGAGAAGAGAATCCTAG ATGGATCCAAGCAATTCAAAAATCGATCCATCAGAGTTTGAGGCGGTGCCTTCGGAGTTGAAAACCTTAGAAAGGGAGCTCGAGGAAAAGATGAAGAAGATGGAAGAAATGAAGAAGAAGATTGAGGGTAAGAAGGTTTGTTTAGAAAAGAAGAAGGATGGTGTGAAGTTTTCAAGGAAAGAAATGGAAGTTTTTAAAGGGTTATGTGGAAAATACAAGAGCTTGAGAAAGGAATACAATGAAGCATGGGAGAAAGAGAGAAGAGAATCCTAG MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRKEMEVFKGLCGKYKSLRKEYNEAWEKERRES*
BLAST of Csa6G434370.1 vs. TrEMBL
Match: A0A0A0KIA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434370 PE=4 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 9.8e-44 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1
BLAST of Csa6G434370.1 vs. TrEMBL
Match: B9GI29_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s26230g PE=4 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 5.6e-07 Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 1
BLAST of Csa6G434370.1 vs. TrEMBL
Match: A0A061GFQ3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030205 PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06 Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 1
BLAST of Csa6G434370.1 vs. TrEMBL
Match: A0A061GTN1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_040782 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 2.1e-06 Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 1
BLAST of Csa6G434370.1 vs. TrEMBL
Match: I1LPC8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G021200 PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 4.8e-06 Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 1
BLAST of Csa6G434370.1 vs. NCBI nr
Match: gi|700192913|gb|KGN48117.1| (hypothetical protein Csa_6G434370 [Cucumis sativus]) HSP 1 Score: 183.7 bits (465), Expect = 1.4e-43 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1
BLAST of Csa6G434370.1 vs. NCBI nr
Match: gi|224054506|ref|XP_002298294.1| (hypothetical protein POPTR_0001s26230g [Populus trichocarpa]) HSP 1 Score: 61.6 bits (148), Expect = 8.1e-07 Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 1
BLAST of Csa6G434370.1 vs. NCBI nr
Match: gi|590626019|ref|XP_007026048.1| (Uncharacterized protein TCM_030205 [Theobroma cacao]) HSP 1 Score: 60.1 bits (144), Expect = 2.4e-06 Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 1
BLAST of Csa6G434370.1 vs. NCBI nr
Match: gi|590584277|ref|XP_007015134.1| (Uncharacterized protein TCM_040782 [Theobroma cacao]) HSP 1 Score: 59.7 bits (143), Expect = 3.1e-06 Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 1
BLAST of Csa6G434370.1 vs. NCBI nr
Match: gi|703116880|ref|XP_010101246.1| (hypothetical protein L484_005595 [Morus notabilis]) HSP 1 Score: 59.3 bits (142), Expect = 4.0e-06 Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
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