Csa6G434370 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G434370
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 20564307 .. 20565864 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCTTCTCCTTCTCCCTTGCTTGCTTAGGAGGGTGAAGGTGAGAAAAAATATCAAAAGGTGAGTTTGGGTTGTTAACCTCTCAATTTAGTTCACCTTTGTTATTGTCTCATTAATTATATATATACTTATTGTTACTATATCAATCATCATGATATGTTGTGAGTTCTTTTACTATACCATCACGCGTGTTTAAGAAATGTTGGGTTTAGAATTTGGTGAAAGATGGTCGAGTGAGATTTGTTGTATGGATTGAAACTTAAGGCCGAGTGGTTAGACACTAAGTTGATTGTGAAGTTTGGAGTCAATATGTTGAAGTTAAGAAGTTCTATATTTGAGGTGTAGAGTTTGAAAAATAAAATTATTTGATAAATGTACAAACGCTTCCTAAATGATCACAAGAGAGACGTTTGTGTGTTTAAGAAATTAAAGTATTGGGTTTAAAGTGCAAGTTTAAGAAAATAGTTTATTATATGTTTAGAAATTGGTGCCGGATTGAGTGAGGTTTGTTTACGATTGAAACTTATGAGGTGTTTAGGCTCTAGGTTGAAAATTAAGAAGTTTATGTTTGAGATGTAGAGTTGTTAAGGTAAAATTACTCGATAAACGTAAATACAGTGGATAAAGAGAAGATAAAGTTTTTTGATAAATGTGTAAACTTAACACACAATTACCATTAAAATTCAATTGTTTAACACCGATATACATATAAAAAACAATCAAATAAATTAACAAACACTTAATTTTATTAACTCGATCATAATCGACACAATTTTTTAGTTTTCTTTTGTATGATTATTGTAGTAATGAAATCTGACACGTGCGAGGCATGTCATGTGACCCGATCGATAATGGGTCCACTCATAAATCATATTGGGCCGTTTATATTTCAGCCCATAGAAAACATTATGGGCCGAGCCCAATAATACTATTACTCTATTTTTTTCATTGATGTGATTTATAGTATAGTTTTTCATTTGCATATATCTTCACAGGTTTAATTTCATTTCAATATTTTCTATCCTAATTATACATTTTAATACCAATACTGCCTAATTTATTTCAACAATCATGATACCTAAGTAAATAAAGTTAAACATAACAATTTCACTCGTTTTCCACTCAGGGATGGATCCAAGCAATTCAAAAATCGATCCATCAGGTTCGTTTCAATTTTTTTCAAACTTTTAGATTTATCGTTAGTTTAATATAACCGTTTAGTGAACGATTGAAATATTTGTATAATAGAGTTTGAGGCGGTGCCTTCGGAGTTGAAAACCTTAGAAAGGGAGCTCGAGGAAAAGATGAAGAAGATGGAAGAAATGAAGAAGAAGATTGAGGGTAAGAAGGTTTGTTTAGAAAAGAAGAAGGATGGTGTGAAGTTTTCAAGGAAAGAAATGGAAGTTTTTAAAGGGTTATGTGGAAAATACAAGAGCTTGAGAAAGGAATACAATGAAGCATGGGAGAAAGAGAGAAGAGAATCCTAGGAAATGTGTAATTAATGACCAAAGACTTGAATGTCTCTAGCACATGTTATTTTAATTATTAATAAAGATCC

mRNA sequence

ATGGATCCAAGCAATTCAAAAATCGATCCATCAGAGTTTGAGGCGGTGCCTTCGGAGTTGAAAACCTTAGAAAGGGAGCTCGAGGAAAAGATGAAGAAGATGGAAGAAATGAAGAAGAAGATTGAGGGTAAGAAGGTTTGTTTAGAAAAGAAGAAGGATGGTGTGAAGTTTTCAAGGAAAGAAATGGAAGTTTTTAAAGGGTTATGTGGAAAATACAAGAGCTTGAGAAAGGAATACAATGAAGCATGGGAGAAAGAGAGAAGAGAATCCTAG

Coding sequence (CDS)

ATGGATCCAAGCAATTCAAAAATCGATCCATCAGAGTTTGAGGCGGTGCCTTCGGAGTTGAAAACCTTAGAAAGGGAGCTCGAGGAAAAGATGAAGAAGATGGAAGAAATGAAGAAGAAGATTGAGGGTAAGAAGGTTTGTTTAGAAAAGAAGAAGGATGGTGTGAAGTTTTCAAGGAAAGAAATGGAAGTTTTTAAAGGGTTATGTGGAAAATACAAGAGCTTGAGAAAGGAATACAATGAAGCATGGGAGAAAGAGAGAAGAGAATCCTAG

Protein sequence

MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRKEMEVFKGLCGKYKSLRKEYNEAWEKERRES*

Homology

[Close]

BLAST of Csa6G434370 vs. TrEMBL
Match: A0A0A0KIA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434370 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 9.8e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60
          MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK
Sbjct: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60

Query: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 91
          EMEVFKGLCGKYKSLRKEYNEAWEKERRES
Sbjct: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 90

[Close]

BLAST of Csa6G434370 vs. TrEMBL
Match: B9GI29_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s26230g PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.6e-07
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 1


Query: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60
          MD SN     S     PS L+ L+++ EEK +K+EE+K +I   K+ LEKK+      +K
Sbjct: 1  MDSSNGTSSNSFSGKNPSGLEALQKQHEEKTRKVEELKSQIVSVKLDLEKKRKDALEDKK 60

Query: 61 EMEVFKGLCGKYKSLRKEYNEAWEK 86
          E  VFK L  KY SLR+EYN   E+
Sbjct: 61 E--VFKSLSDKYNSLREEYNTLAER 83

[Close]

BLAST of Csa6G434370 vs. TrEMBL
Match: A0A061GFQ3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030205 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 1


Query: 1   MDPSNS---KIDPSEFEAVP-SELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVK 60
           + PS+S     +P E  A P  EL+TL+++ EEK  K++E+K++I   K+CLEKKK   K
Sbjct: 53  LQPSSSITFSFEPFEALAKPLPELETLQKQHEEKTLKIQELKRQIVTVKLCLEKKKKKKK 112

Query: 61  -FSRKEMEVFKGLCGKYKSLRKEYNEAWEKERRE 90
                  E F  L  KY SLR+EYN    +  RE
Sbjct: 113 NIPDARKEAFNDLSEKYSSLREEYNALLAERSRE 146

[Close]

BLAST of Csa6G434370 vs. TrEMBL
Match: A0A061GTN1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_040782 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-06
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 1


Query: 4  SNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLE-KKKDGVKFSRKEM 63
          S S  +P       SEL+TL+++ EEK  K++E+K++IE  K+ LE KKK  +  +RK  
Sbjct: 5  SGSSYNPPALAKPVSELETLQKQHEEKTLKIQELKRQIETVKLQLEKKKKKDIPDARK-- 64

Query: 64 EVFKGLCGKYKSLRKEYNEAWEKERRE 90
          E F  L  KY SLR+EYN    +  RE
Sbjct: 65 EAFHNLSEKYNSLREEYNALLAERSRE 89

[Close]

BLAST of Csa6G434370 vs. TrEMBL
Match: I1LPC8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G021200 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.8e-06
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 1


Query: 18 SELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRKEMEVFKGLCGKYKSLRK 77
          SEL+ L+RE EEK  K++E+K++IE  K  LEKKK  V  + ++M  F  L  KY SLR+
Sbjct: 19 SELEALQREHEEKNLKIQELKRQIELTKNRLEKKKKEV--TEEQMGGFNTLSNKYNSLRE 78

Query: 78 EYNEAWEKERRES 91
          EYN    ++ RES
Sbjct: 79 EYNAMLAEKLRES 89

[Close]

BLAST of Csa6G434370 vs. NCBI nr
Match: gi|700192913|gb|KGN48117.1| (hypothetical protein Csa_6G434370 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 1.4e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60
          MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK
Sbjct: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60

Query: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 91
          EMEVFKGLCGKYKSLRKEYNEAWEKERRES
Sbjct: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 90

[Close]

BLAST of Csa6G434370 vs. NCBI nr
Match: gi|224054506|ref|XP_002298294.1| (hypothetical protein POPTR_0001s26230g [Populus trichocarpa])

HSP 1 Score: 61.6 bits (148), Expect = 8.1e-07
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 1


Query: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60
          MD SN     S     PS L+ L+++ EEK +K+EE+K +I   K+ LEKK+      +K
Sbjct: 1  MDSSNGTSSNSFSGKNPSGLEALQKQHEEKTRKVEELKSQIVSVKLDLEKKRKDALEDKK 60

Query: 61 EMEVFKGLCGKYKSLRKEYNEAWEK 86
          E  VFK L  KY SLR+EYN   E+
Sbjct: 61 E--VFKSLSDKYNSLREEYNTLAER 83

[Close]

BLAST of Csa6G434370 vs. NCBI nr
Match: gi|590626019|ref|XP_007026048.1| (Uncharacterized protein TCM_030205 [Theobroma cacao])

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-06
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 1


Query: 1   MDPSNS---KIDPSEFEAVP-SELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVK 60
           + PS+S     +P E  A P  EL+TL+++ EEK  K++E+K++I   K+CLEKKK   K
Sbjct: 53  LQPSSSITFSFEPFEALAKPLPELETLQKQHEEKTLKIQELKRQIVTVKLCLEKKKKKKK 112

Query: 61  -FSRKEMEVFKGLCGKYKSLRKEYNEAWEKERRE 90
                  E F  L  KY SLR+EYN    +  RE
Sbjct: 113 NIPDARKEAFNDLSEKYSSLREEYNALLAERSRE 146

[Close]

BLAST of Csa6G434370 vs. NCBI nr
Match: gi|590584277|ref|XP_007015134.1| (Uncharacterized protein TCM_040782 [Theobroma cacao])

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-06
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 1


Query: 4  SNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKD-GVKFSRKEM 63
          S S  +P       SEL+TL+++ EEK  K++E+K++IE  K+ LEKKK   +  +RKE 
Sbjct: 5  SGSSYNPPALAKPVSELETLQKQHEEKTLKIQELKRQIETVKLQLEKKKKKDIPDARKE- 64

Query: 64 EVFKGLCGKYKSLRKEYNEAWEKERRE 90
            F  L  KY SLR+EYN    +  RE
Sbjct: 65 -AFHNLSEKYNSLREEYNALLAERSRE 89

[Close]

BLAST of Csa6G434370 vs. NCBI nr
Match: gi|703116880|ref|XP_010101246.1| (hypothetical protein L484_005595 [Morus notabilis])

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-06
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 1


Query: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60
          M+ S+S+I  S  +A    L+ L+++ EEK  ++EE+K++IE  K+ LEK+K+  K   +
Sbjct: 1  MEDSSSRISLSAEKASSEILEELQKQHEEKTSRIEELKRQIESAKLSLEKRKN--KIPAE 60

Query: 61 EMEVFKGLCGKYKSLRKEYN 81
          +ME FK L  KY  +R+E+N
Sbjct: 61 KMEAFKSLSEKYIVMREEHN 78

The following BLAST results are available for this feature:

BLAST of Csa6G434370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIA6_CUCSA	9.8e-44	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434370 PE=4 SV=1	[more]
B9GI29_POPTR	5.6e-07	43.53	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s26230g PE=4 SV=1	[more]
A0A061GFQ3_THECC	1.6e-06	41.49	Uncharacterized protein OS=Theobroma cacao GN=TCM_030205 PE=4 SV=1	[more]
A0A061GTN1_THECC	2.1e-06	42.53	Uncharacterized protein OS=Theobroma cacao GN=TCM_040782 PE=4 SV=1	[more]
I1LPC8_SOYBN	4.8e-06	47.95	Uncharacterized protein OS=Glycine max GN=GLYMA_12G021200 PE=4 SV=1	[more]

BLAST of Csa6G434370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192913\|gb\|KGN48117.1\|	1.4e-43	100.00	hypothetical protein Csa_6G434370 [Cucumis sativus]	[more]
gi\|224054506\|ref\|XP_002298294.1\|	8.1e-07	43.53	hypothetical protein POPTR_0001s26230g [Populus trichocarpa]	[more]
gi\|590626019\|ref\|XP_007026048.1\|	2.4e-06	41.49	Uncharacterized protein TCM_030205 [Theobroma cacao]	[more]
gi\|590584277\|ref\|XP_007015134.1\|	3.1e-06	42.53	Uncharacterized protein TCM_040782 [Theobroma cacao]	[more]
gi\|703116880\|ref\|XP_010101246.1\|	4.0e-06	40.00	hypothetical protein L484_005595 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU158691	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G434370.1	Csa6G434370.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU158691	CU158691	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 20..51 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G434370	MELO3C014577	Melon (DHL92) v3.5.1	cumeB491
Csa6G434370	MELO3C014577.2	Melon (DHL92) v3.6.1	cumedB471
Csa6G434370	CSPI06G24020	Wild cucumber (PI 183967)	cpicuB313
Csa6G434370	CsGy6G023380	Cucumber (Gy14) v2	cgybcuB281
Csa6G434370	Carg02698	Silver-seed gourd	carcuB0941

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G434370	Cucumber (Gy14) v1	cgycuB167
Csa6G434370	Cucurbita maxima (Rimu)	cmacuB145
Csa6G434370	Cucurbita maxima (Rimu)	cmacuB562
Csa6G434370	Cucurbita maxima (Rimu)	cmacuB630
Csa6G434370	Cucurbita moschata (Rifu)	cmocuB131
Csa6G434370	Cucurbita moschata (Rifu)	cmocuB552
Csa6G434370	Cucurbita moschata (Rifu)	cmocuB620
Csa6G434370	Watermelon (Charleston Gray)	cuwcgB438
Csa6G434370	Watermelon (97103) v1	cuwmB513
Csa6G434370	Cucurbita pepo (Zucchini)	cpecuB281
Csa6G434370	Cucurbita pepo (Zucchini)	cpecuB624
Csa6G434370	Cucurbita pepo (Zucchini)	cpecuB684
Csa6G434370	Cucurbita pepo (Zucchini)	cpecuB742
Csa6G434370	Bottle gourd (USVL1VR-Ls)	culsiB414
Csa6G434370	Bottle gourd (USVL1VR-Ls)	culsiB467
Csa6G434370	Silver-seed gourd	carcuB0553
Csa6G434370	Watermelon (97103) v2	cuwmbB428
Csa6G434370	Watermelon (97103) v2	cuwmbB452
Csa6G434370	Wax gourd	cuwgoB596
Csa6G434370	Cucumber (Chinese Long) v2	cucuB043