Csa6G421620.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G421620.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Putative RING zinc finger domain superfamily protein; contains IPR013083 (Zinc finger, RING/FYVE/PHD-type)
Location	Chr6 : 19427202 .. 19428425 (+)
Sequence length	510

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGCAATCAAACATGGCGGGTCCCCTTTTCCATATAGATCGAGATCGATGCCTGCACGTTTATTGCTTTACTCTCTCTTCATTGCCTGCTGCGGCGCGCTCCCCTCCACTCCAATGCTAACCACAAAGTCTTTGATCAATCACCTCATTCAATTCAACTTCACAAGCTTCCCTTAGAACCAACTTCTTCAGTTCAGATATGGAATTGGAATGAATGGCAGACATGGCATGGCCCTTCATTCTACTTCCGAGTGTCTCTCTTCTTCACCTCCACTCGATATTGGCGGACTTCTTTCAGCTCAGTTAATGACGTCCTATCCCTGAAGATCTACAGAAAACCCAAAACTGGTTAGTAGGATCATTATCTCTTTCATGAAAAACCAACTTTTCTTTTCTTGATTTTGCACCTTTGTTTTGAAAAGACATTGTTTGAGGCATTCTTCTTTGTGGGTATCTCTGGTTTATTCTCTGTTTCATTTCACACCATAATCCCTTTTCGGGGTTCGTTGTGTCAGATTGGTATCTAGACGAAATTTGAAGAGGAAATGGAGCGGGCTAATCGAAGGCGGAGATGGACAAATTTAAGGCAACGGCTAGGATTGAAGGGGATGGGGTGCTGTAGAGGTTCATGGAGTCCAACATCGTCAACTTTGACAATGATTGAAGGGTTTAGCTTAAGCCTTCATGGAAGCAGCCGCAGTCAAGGAGAAGATGGGGGTCGGAGCTCAGCAGCTTCCGGTATGAACTTGGCGATGGCTCTGGCGGCGGAGAGAAATTTGAGGAATGACGAAGGAGGCCCCACGGGGGGTAGTGATGTGAAATCACTGATGAGATTGTTTGAAGAAATGGACGGTGGGGATTGGAAAACAAAAAGAAAGGAAAGTGAGAATAACGGTGATTGGATGTGCTGCGTGTGCATGGAAAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAACTATGGCTTAACAGAGGCACGTGTCCCATCTGCAGCCGTTCGATCATTGAGATTCTTGACATTTTTTAAAATTTTTCAAAAACTCATTTTTGTTTTCCTAAAATTATTATCTCAATGTGATTTGTTTTTGTTTTATTTTGTGGTTTTGGTATATTTTTATTTTCCTCTGATAGGTATGATGGAAGGATAAGGCTGCACGTGTTCATCAAAATTACATCATCCAAATATAACATTCTAA

mRNA sequence

ATGGAGCGGGCTAATCGAAGGCGGAGATGGACAAATTTAAGGCAACGGCTAGGATTGAAGGGGATGGGGTGCTGTAGAGGTTCATGGAGTCCAACATCGTCAACTTTGACAATGATTGAAGGGTTTAGCTTAAGCCTTCATGGAAGCAGCCGCAGTCAAGGAGAAGATGGGGGTCGGAGCTCAGCAGCTTCCGGTATGAACTTGGCGATGGCTCTGGCGGCGGAGAGAAATTTGAGGAATGACGAAGGAGGCCCCACGGGGGGTAGTGATGTGAAATCACTGATGAGATTGTTTGAAGAAATGGACGGTGGGGATTGGAAAACAAAAAGAAAGGAAAGTGAGAATAACGGTGATTGGATGTGCTGCGTGTGCATGGAAAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAACTATGGCTTAACAGAGGCACGTGTCCCATCTGCAGCCGTTCGATCATTGAGATTCTTGACATTTTTTAA

Coding sequence (CDS)

ATGGAGCGGGCTAATCGAAGGCGGAGATGGACAAATTTAAGGCAACGGCTAGGATTGAAGGGGATGGGGTGCTGTAGAGGTTCATGGAGTCCAACATCGTCAACTTTGACAATGATTGAAGGGTTTAGCTTAAGCCTTCATGGAAGCAGCCGCAGTCAAGGAGAAGATGGGGGTCGGAGCTCAGCAGCTTCCGGTATGAACTTGGCGATGGCTCTGGCGGCGGAGAGAAATTTGAGGAATGACGAAGGAGGCCCCACGGGGGGTAGTGATGTGAAATCACTGATGAGATTGTTTGAAGAAATGGACGGTGGGGATTGGAAAACAAAAAGAAAGGAAAGTGAGAATAACGGTGATTGGATGTGCTGCGTGTGCATGGAAAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGGGAACTATGGCTTAACAGAGGCACGTGTCCCATCTGCAGCCGTTCGATCATTGAGATTCTTGACATTTTTTAA

Protein sequence

MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRSSAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF*

Homology

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BLAST of Csa6G421620.1 vs. Swiss-Prot
Match: IAP4_OSHVF (Putative apoptosis inhibitor ORF106 OS=Ostreid herpesvirus 1 (isolate France) GN=ORF106 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.8e-06
Identity = 28/80 (35.00%), Postives = 39/80 (48.75%), Query Frame = 1


Query: 99  EEMDGG-----DWKTKRKESENNGDWMCCVCMERSKGAAFIPCGHTF-CRVCSRELWLN- 158
           +E DGG     ++    KE EN     C  C ER    AFIPCGH F C +C+ E++ + 
Sbjct: 378 KEEDGGGGGVIEFPKNNKEVENPKRGSCKACYERKADIAFIPCGHVFSCNICTMEMFASY 437

Query: 159 --RGTCPICSRSIIEILDIF 170
             +  CP+C   + ++  IF
Sbjct: 438 KKKKRCPMCRVHVEKVQKIF 457

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BLAST of Csa6G421620.1 vs. TrEMBL
Match: A0A0A0KEL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421620 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 7.1e-96
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1


Query: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60
           MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS
Sbjct: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60

Query: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120
           SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM
Sbjct: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
           CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

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BLAST of Csa6G421620.1 vs. TrEMBL
Match: W9SUF0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004822 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-52
Identity = 105/173 (60.69%), Postives = 124/173 (71.68%), Query Frame = 1


Query: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60
           M+ A+R  RWT+++QRLGLKGMGCC  +WSP+ STLT+IE      H  +      G   
Sbjct: 28  MDGADRIGRWTSIKQRLGLKGMGCCGATWSPSPSTLTIIETLEEEHHHRTEPVSV-GPVQ 87

Query: 61  SAASGMNLAMALAAERNLRNDEGGPTGGS-DVKSLMRLFEEMDGGDWKTKRKESENNG-- 120
           +A  GMNLAMALAAERN R    GPT  S  VKSLM L EEMD  DW  +R+     G  
Sbjct: 88  AAVPGMNLAMALAAERNSRAGREGPTTASGQVKSLMTLIEEMDDVDWSNRRRRDNKEGGD 147

Query: 121 -DWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
            DW+CCVCMER+KGAAFIPCGHTFCRVCSRE+W+NRGTCP+CSR I+EILDI+
Sbjct: 148 SDWLCCVCMERNKGAAFIPCGHTFCRVCSREMWVNRGTCPLCSRPIVEILDIY 199

[Close]

BLAST of Csa6G421620.1 vs. TrEMBL
Match: A0A067EKA2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036555mg PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.7e-47
Identity = 102/192 (53.12%), Postives = 120/192 (62.50%), Query Frame = 1


Query: 6   RRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMI--------------EGFSLSLHGSSR 65
           RRR W NL+QRL LKGMGCC   WS  + TLT++               G  + +H  + 
Sbjct: 7   RRRVWQNLKQRLRLKGMGCCGSMWSFRTQTLTIMPRQEEEEEEPEEQERGTHVRMHMRNA 66

Query: 66  SQGEDGGRSSAASGMNLAMALAAERNLRNDEG-----GPTGGSDVKSLMRLFEEMDGGDW 125
           +       +     MNLAMALAAERNLR+ +G         G+ VK+LM L EE DGGDW
Sbjct: 67  AASVTAAGAGTTINMNLAMALAAERNLRSGDGLVVPKKNAAGTAVKTLMMLIEETDGGDW 126

Query: 126 KTKRKESENNG---------DWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPI 170
           + K+      G         DWMCCVCMER+KGAAFIPCGHTFCRVCSR+LWLNRGTCPI
Sbjct: 127 QMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPI 186

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BLAST of Csa6G421620.1 vs. TrEMBL
Match: V4UF21_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016774mg PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.8e-46
Identity = 101/193 (52.33%), Postives = 119/193 (61.66%), Query Frame = 1


Query: 6   RRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMI---------------EGFSLSLHGSS 65
           R R W NL+QRL LKGMGCC   WS  + TLT++                G  + +H  +
Sbjct: 7   RTRVWQNLKQRLRLKGMGCCGSMWSFRTQTLTIMPRQEEEEQEEPEEQERGTHVRMHMRN 66

Query: 66  RSQGEDGGRSSAASGMNLAMALAAERNLRNDEG-----GPTGGSDVKSLMRLFEEMDGGD 125
            +       +     MNLAMALAAERNLR+ +G         G+ VK+LM L EE DGGD
Sbjct: 67  AAASVTAAGAGTTINMNLAMALAAERNLRSGDGLVVPKKNAAGTAVKTLMMLIEETDGGD 126

Query: 126 WKTKRKESENNG---------DWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCP 170
           W+ K+      G         DWMCCVCMER+KGAAFIPCGHTFCRVCSR+LWLNRGTCP
Sbjct: 127 WQMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCP 186

[Close]

BLAST of Csa6G421620.1 vs. TrEMBL
Match: A0A061DKM7_THECC (Ubiquitin-protein ligase, putative OS=Theobroma cacao GN=TCM_002176 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.8e-45
Identity = 105/216 (48.61%), Postives = 131/216 (60.65%), Query Frame = 1


Query: 5   NRRRRWTNLRQRLGLKGMGCCRGSWSPTS--STLTMIEGFS-----------------LS 64
           +RR  W NL+QRLGLK MGCC  +WSP +  ST++++E                    +S
Sbjct: 7   DRRASWKNLKQRLGLKAMGCCGATWSPRARISTISILEEDEDEEEEAAAVAAQSQQVIIS 66

Query: 65  LHGS---SRSQGEDGGRSS---------------AASGMNLAMALAAERNLRNDEGGPTG 124
             G+   +R Q +    +S               A SGMNLAMALAAERNLR    GP+ 
Sbjct: 67  RSGNVVNNRIQNQTENSASTPLLVGQQQQQQVPTAGSGMNLAMALAAERNLRTANMGPS- 126

Query: 125 GSDVKSLMRLFEEMDGGDWKTKRKESENN--------------GDWMCCVCMERSKGAAF 170
            ++VK+LMRL EE DG DWK KRK++  N               DWMCCVCMER KGAAF
Sbjct: 127 PTEVKTLMRLIEETDGVDWKKKRKDNVVNVEGVGVGGLGGGGSCDWMCCVCMERKKGAAF 186

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BLAST of Csa6G421620.1 vs. TAIR10
Match: AT4G03965.1 (AT4G03965.1 RING/U-box superfamily protein)

HSP 1 Score: 141.4 bits (355), Expect = 5.3e-34
Identity = 87/184 (47.28%), Postives = 106/184 (57.61%), Query Frame = 1


Query: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRS-QGEDGGR 60
           ++R+ RR+R   L++RLG K +GCC  +W      LT   G        +R   G D   
Sbjct: 32  LDRSRRRKR--TLKERLGFKRIGCCGPTWG---LRLTSNTGEDDDEPFENRLVSGSDHVT 91

Query: 61  SSAASGMNLAMALAAERNLRNDEGGPTGG-SDVK-SLMRLFEEMDGGDWKTKRKESEN-- 120
                GMNLA ALAAERN R +E   +G  + +K SLMRL EE        +  E+E   
Sbjct: 92  GPLNQGMNLATALAAERNYRTEETEASGSLTPLKVSLMRLLEET-AERVVVEENETERVT 151

Query: 121 ----------NGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEI 170
                     N D +CCVCM R KGAAFIPCGHTFCRVCSRE+WLNRG+CP+C+R IIEI
Sbjct: 152 ASASSTVRGVNNDSVCCVCMGRKKGAAFIPCGHTFCRVCSREVWLNRGSCPLCNRPIIEI 209

[Close]

BLAST of Csa6G421620.1 vs. TAIR10
Match: AT4G22250.1 (AT4G22250.1 RING/U-box superfamily protein)

HSP 1 Score: 131.0 bits (328), Expect = 7.2e-31
Identity = 79/177 (44.63%), Postives = 94/177 (53.11%), Query Frame = 1


Query: 8   RRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDG----GRSSAA 67
           RR   L++RL  K +GCC  +W+   +  T +   +         Q E G        + 
Sbjct: 38  RRKRTLKERLRFKCIGCCGPTWNLRLTNNTTLHSPTSRDDEIEELQIETGLVLESDHGSG 97

Query: 68  SGMNLAMALAAERNLRNDEGGPTGGSDVK--SLMRLFEEMDGGDWKTKRKESE------- 127
           +GMNLA AL AER  R +          +  SLMRL EE          KE+E       
Sbjct: 98  TGMNLATALEAERYNRGESTEAEADMTPRRVSLMRLLEETAEKIVDDDGKETEILTASIG 157

Query: 128 --NNGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
                D +CCVCM R KGAAFIPCGHTFCRVCSRELWLNRG+CP+C+R IIEILDIF
Sbjct: 158 TLTGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPIIEILDIF 214

[Close]

BLAST of Csa6G421620.1 vs. TAIR10
Match: AT1G62370.1 (AT1G62370.1 RING/U-box superfamily protein)

HSP 1 Score: 117.9 bits (294), Expect = 6.3e-27
Identity = 72/176 (40.91%), Postives = 92/176 (52.27%), Query Frame = 1


Query: 9   RWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIE-------------GFSLSLHGSSRSQGE 68
           +WT L+QRL    +GCC     P +  L   E               +  +  S    G 
Sbjct: 40  KWTTLKQRLRFDWVGCCG---KPLTLRLRQAETPIVVDDDDDEEESQNQVVDFSDPGTGT 99

Query: 69  DGGRSSAASGMNLAMALAAER--NLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKES 128
           +    +  S  NLA ALA ER  ++  +E   T       LMRL  E DG D  T    +
Sbjct: 100 ELDCLTRGSTRNLAEALAEERLAHVTEEETAVTK----VPLMRLLAESDGCDSTT----T 159

Query: 129 ENNGDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
               D +CCVCM R KGAAFIPCGHT+CRVCSRE+W+NRGTCP+C+RSI ++LD++
Sbjct: 160 WLGNDPLCCVCMGREKGAAFIPCGHTYCRVCSREIWMNRGTCPLCNRSIFDVLDLY 204

[Close]

BLAST of Csa6G421620.1 vs. TAIR10
Match: AT3G25030.1 (AT3G25030.1 RING/U-box superfamily protein)

HSP 1 Score: 110.9 bits (276), Expect = 7.7e-25
Identity = 76/193 (39.38%), Postives = 98/193 (50.78%), Query Frame = 1


Query: 1   MERANRRRR----WTNLRQRLGLKGMGCCRGSWSPTSSTLTMIE---------GFSLSLH 60
           M+R +R  R    W +LR++L LK  G    S +   S  T I          GF LS  
Sbjct: 63  MQREHRHSRDKTAWKSLREKLRLKRNGSVWISSNSIPSLDTPIPNRDNVSHQLGFLLSNS 122

Query: 61  GSSRSQGEDGGRSSAASGMNLAMALAAERNLRNDEGGPTGGSDVK----SLMRLFEEMDG 120
           G+   +      SS    + L   LA ER L   E       +V+    SLM L EE +G
Sbjct: 123 GNVTEEA-----SSVEGRIRLGAVLAEERALSAREEETPAEREVEPARMSLMELLEENEG 182

Query: 121 G-DWKTKRKESENN------GDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCP 170
              + +   E+E         +  CCVCM RSKGAAFIPCGHTFCR+CSRELW+ RG CP
Sbjct: 183 QMSFVSVDGEAEEEVAAVTAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCP 242

[Close]

BLAST of Csa6G421620.1 vs. TAIR10
Match: AT4G13100.2 (AT4G13100.2 RING/U-box superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 6.1e-22
Identity = 71/202 (35.15%), Postives = 94/202 (46.53%), Query Frame = 1


Query: 2   ERANRRRRWTNLRQRLGLK--GMGCCRGSWSPTSSTLTMIE----------GFSLSLHGS 61
           ER   +  W +LR +L LK    G    +  PT     +            GF L+   +
Sbjct: 75  ERRRDKTAWKSLRDKLRLKRTATGWISSNPIPTLDNHILTPDNDSHRFNRLGFLLTNSET 134

Query: 62  SRSQGEDGGRSSAASG----MNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGD 121
           +RS  +    +  A+     + L   LAAER                SLM L E+ DG  
Sbjct: 135 NRSSRDVSDAAEEAAEREGRLRLGTVLAAEREPPR-----------MSLMELLEDNDGHM 194

Query: 122 WK-TKRKESENNG-----------------DWMCCVCMERSKGAAFIPCGHTFCRVCSRE 170
           ++ + R E E  G                 +  CCVCM RSKGAAFIPCGHTFCR+CSRE
Sbjct: 195 YELSARDEVEVEGRDGCDGGGEAVAVTGAAELGCCVCMVRSKGAAFIPCGHTFCRLCSRE 254

[Close]

BLAST of Csa6G421620.1 vs. NCBI nr
Match: gi|700192764|gb|KGN47968.1| (hypothetical protein Csa_6G421620 [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 1.0e-95
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1


Query: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60
           MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS
Sbjct: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60

Query: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120
           SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM
Sbjct: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
           CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

[Close]

BLAST of Csa6G421620.1 vs. NCBI nr
Match: gi|659097176|ref|XP_008449482.1| (PREDICTED: uncharacterized protein LOC103491356 [Cucumis melo])

HSP 1 Score: 343.2 bits (879), Expect = 2.6e-91
Identity = 162/169 (95.86%), Postives = 164/169 (97.04%), Query Frame = 1


Query: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60
           MERANR RRW NL+QRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQ EDGGRS
Sbjct: 1   MERANRGRRWANLKQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQREDGGRS 60

Query: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120
           SAASGMNLAMALAAERNLR+DEGGPTG SDVKSLMRLFEEMDGGDWKTKRKE ENNGDWM
Sbjct: 61  SAASGMNLAMALAAERNLRSDEGGPTGASDVKSLMRLFEEMDGGDWKTKRKEGENNGDWM 120

Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
           CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

[Close]

BLAST of Csa6G421620.1 vs. NCBI nr
Match: gi|703153220|ref|XP_010110624.1| (hypothetical protein L484_004822 [Morus notabilis])

HSP 1 Score: 214.2 bits (544), Expect = 1.8e-52
Identity = 105/173 (60.69%), Postives = 124/173 (71.68%), Query Frame = 1


Query: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60
           M+ A+R  RWT+++QRLGLKGMGCC  +WSP+ STLT+IE      H  +      G   
Sbjct: 28  MDGADRIGRWTSIKQRLGLKGMGCCGATWSPSPSTLTIIETLEEEHHHRTEPVSV-GPVQ 87

Query: 61  SAASGMNLAMALAAERNLRNDEGGPTGGS-DVKSLMRLFEEMDGGDWKTKRKESENNG-- 120
           +A  GMNLAMALAAERN R    GPT  S  VKSLM L EEMD  DW  +R+     G  
Sbjct: 88  AAVPGMNLAMALAAERNSRAGREGPTTASGQVKSLMTLIEEMDDVDWSNRRRRDNKEGGD 147

Query: 121 -DWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 170
            DW+CCVCMER+KGAAFIPCGHTFCRVCSRE+W+NRGTCP+CSR I+EILDI+
Sbjct: 148 SDWLCCVCMERNKGAAFIPCGHTFCRVCSREMWVNRGTCPLCSRPIVEILDIY 199

[Close]

BLAST of Csa6G421620.1 vs. NCBI nr
Match: gi|641835332|gb|KDO54310.1| (hypothetical protein CISIN_1g036555mg [Citrus sinensis])

HSP 1 Score: 196.4 bits (498), Expect = 3.9e-47
Identity = 102/192 (53.12%), Postives = 120/192 (62.50%), Query Frame = 1


Query: 6   RRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMI--------------EGFSLSLHGSSR 65
           RRR W NL+QRL LKGMGCC   WS  + TLT++               G  + +H  + 
Sbjct: 7   RRRVWQNLKQRLRLKGMGCCGSMWSFRTQTLTIMPRQEEEEEEPEEQERGTHVRMHMRNA 66

Query: 66  SQGEDGGRSSAASGMNLAMALAAERNLRNDEG-----GPTGGSDVKSLMRLFEEMDGGDW 125
           +       +     MNLAMALAAERNLR+ +G         G+ VK+LM L EE DGGDW
Sbjct: 67  AASVTAAGAGTTINMNLAMALAAERNLRSGDGLVVPKKNAAGTAVKTLMMLIEETDGGDW 126

Query: 126 KTKRKESENNG---------DWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPI 170
           + K+      G         DWMCCVCMER+KGAAFIPCGHTFCRVCSR+LWLNRGTCPI
Sbjct: 127 QMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCPI 186

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BLAST of Csa6G421620.1 vs. NCBI nr
Match: gi|567910675|ref|XP_006447651.1| (hypothetical protein CICLE_v10016774mg [Citrus clementina])

HSP 1 Score: 193.7 bits (491), Expect = 2.6e-46
Identity = 101/193 (52.33%), Postives = 119/193 (61.66%), Query Frame = 1


Query: 6   RRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMI---------------EGFSLSLHGSS 65
           R R W NL+QRL LKGMGCC   WS  + TLT++                G  + +H  +
Sbjct: 7   RTRVWQNLKQRLRLKGMGCCGSMWSFRTQTLTIMPRQEEEEQEEPEEQERGTHVRMHMRN 66

Query: 66  RSQGEDGGRSSAASGMNLAMALAAERNLRNDEG-----GPTGGSDVKSLMRLFEEMDGGD 125
            +       +     MNLAMALAAERNLR+ +G         G+ VK+LM L EE DGGD
Sbjct: 67  AAASVTAAGAGTTINMNLAMALAAERNLRSGDGLVVPKKNAAGTAVKTLMMLIEETDGGD 126

Query: 126 WKTKRKESENNG---------DWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCP 170
           W+ K+      G         DWMCCVCMER+KGAAFIPCGHTFCRVCSR+LWLNRGTCP
Sbjct: 127 WQMKKDGDVEGGEVLTLREGSDWMCCVCMERNKGAAFIPCGHTFCRVCSRDLWLNRGTCP 186

The following BLAST results are available for this feature:

BLAST of Csa6G421620.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IAP4_OSHVF	9.8e-06	35.00	Putative apoptosis inhibitor ORF106 OS=Ostreid herpesvirus 1 (isolate France) GN...	[more]

BLAST of Csa6G421620.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEL6_CUCSA	7.1e-96	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421620 PE=4 SV=1	[more]
W9SUF0_9ROSA	1.3e-52	60.69	Uncharacterized protein OS=Morus notabilis GN=L484_004822 PE=4 SV=1	[more]
A0A067EKA2_CITSI	2.7e-47	53.13	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036555mg PE=4 SV=1	[more]
V4UF21_9ROSI	1.8e-46	52.33	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016774mg PE=4 SV=1	[more]
A0A061DKM7_THECC	9.8e-45	48.61	Ubiquitin-protein ligase, putative OS=Theobroma cacao GN=TCM_002176 PE=4 SV=1	[more]

BLAST of Csa6G421620.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03965.1	5.3e-34	47.28	RING/U-box superfamily protein	[more]
AT4G22250.1	7.2e-31	44.63	RING/U-box superfamily protein	[more]
AT1G62370.1	6.3e-27	40.91	RING/U-box superfamily protein	[more]
AT3G25030.1	7.7e-25	39.38	RING/U-box superfamily protein	[more]
AT4G13100.2	6.1e-22	35.15	RING/U-box superfamily protein	[more]

BLAST of Csa6G421620.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192764\|gb\|KGN47968.1\|	1.0e-95	100.00	hypothetical protein Csa_6G421620 [Cucumis sativus]	[more]
gi\|659097176\|ref\|XP_008449482.1\|	2.6e-91	95.86	PREDICTED: uncharacterized protein LOC103491356 [Cucumis melo]	[more]
gi\|703153220\|ref\|XP_010110624.1\|	1.8e-52	60.69	hypothetical protein L484_004822 [Morus notabilis]	[more]
gi\|641835332\|gb\|KDO54310.1\|	3.9e-47	53.13	hypothetical protein CISIN_1g036555mg [Citrus sinensis]	[more]
gi\|567910675\|ref\|XP_006447651.1\|	2.6e-46	52.33	hypothetical protein CICLE_v10016774mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G421620	Csa6G421620	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa6G421620.1	Csa6G421620.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G421620.1.utr5p1	Csa6G421620.1.utr5p1	five_prime_UTR
Csa6G421620.1.utr5p2	Csa6G421620.1.utr5p2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G421620.1.cds2	Csa6G421620.1.cds2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G421620.1.utr3p1	Csa6G421620.1.utr3p1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 121..158 score: 4.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 121..159 score: 11
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 107..162 score: 1.7
None	No IPR available	PANTHER	PTHR12183	UNCHARACTERIZED RING ZINC FINGER-CONTAINING PROTEIN	coord: 1..169 score: 3.1
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 119..164 score: 1.0
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 111..166 score: 1.86