Csa6G409330.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G409330.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Pantothenate synthetase; contains IPR003721 (Pantoate-beta-alanine ligase)
Location	Chr6 : 18792764 .. 18794360 (-)
Sequence length	699

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGGAGGAGTCAGGGTATCATAATTACAGACAAGTACCAGATGAGGACATGGGCGAGATCCATGAGACACAATTCCATTGCTCTCGTTCCCACCATGGGTTTCCTTCATGACGGCCATCTCTCTCTAATCCAAGAAGCTCACAACCATGCACAACTTGTTGTCGTCTCTATCTACGTTAACCCTAGCCAATTTGCCCCTTCCGAGGATCTCTCAACCTATCCTTCAGATTTCGACGCCGACATTCGGAAGCTCATGACTGTTCCTGGAGGAGTTGATGTCATTTTCCATCCTCACAATCTCTATGACTATGGAGTTGAATCAGCTATGGATTGTGCTGGAATGGCCAACGTTTCTTGCTTGGAGGAATCCGGTTCAGGGCATGAGACATGGGTGAGGGTTGAGCGTTTGGAGAAGGGCATGTGTGGGAGAAGTAGGCCTGTTTTCTTTAGAGGGGTTGCTACGGTTGTTGCTAAGTTATTCAATATTGTTGACCCTGATGTTGCCTTGTTTGGGAAGAAGGATTATCAGCAATGGCGGATTATCGACCGGATGGTGAGTCTTTTTAATAGTGTGAATGGTTTTGATTTTCATATCTGTTTTTGAGCTCAAACTTCATTGTTTTTCATCTGAAATCCTAACTTGATTGCTTTTCTATGATTTATGAACTTAATTTGCATTAAGTCACTAAATCTTGCATGTCTGTAAAACTATCTTCTAAACTTGAAAAGCTTATTCCATCAATACTATTAGATGAACTGGTAGTTAGGTTCTCAAGAATACTAAATCTTTCATGTGTGCAATATGCCCTGCAGGGAATGGCTTGAACTCCCGTTCCTTGAACTTTATTCAGTTCTGATTCGTATAGTTTAAATTTTGGGTTGGGTAACAAGCTTCGCTTACCATCCTTAGTTATTGTGTTTTTACCCACCATTATGATGATTCCAATCAAGGGCTCCCTTAATGTTTATAAGATAGATGAGTCAATTCTCTTATTACCAATTTAAAAGAAGCCTCATGCTATCTATATGGTATCATATCCATAAAGCTAAAATGAATATTCAATTCATTAAAAATTTAAATTTTGATCCAAGAATAGTGAACCCAAAAGGGGTACTATCTTGAAAAGGGTCATGTTGAGAATGTCAAACTAAAAAATCTAACGACCTCATAATGTTTATAAGGTAGATGAACTAATCCTCTCATTAATAAATGATTTTGAAAAGGAATCTCATGTTATCTAATAATTTGTTGTCATTTGATTAACAAAAGCATATATTTATTACCACTGGTGACAAGGCAACATCTCTCACTTCAGCTTTCTTCCAGGTTCGAGATCTTGATTTTCCTGTAAAAATTGTGGGGTTTGAAATCGTGCGGGATGCTGATGGTCTTGCTATGAGTTCTCGCAATGTGCGGCTCTCACCTATAGAAAGACAAAAGGTTCTCTTCAAATTATAGTGTAGTAGTGGGTTCAAAGTGCAAAGCATATTGGCTTTATCGTTCATGATCAAATGATTACTTAGATTTAGAAATTGATTTACTTATTCTCATCTTTCGTCTATAGGCATTGTCTATAAACAGATCATTGTAA

mRNA sequence

ATGGCGAGGAGGAGTCAGGGTATCATAATTACAGACAAGTACCAGATGAGGACATGGGCGAGATCCATGAGACACAATTCCATTGCTCTCGTTCCCACCATGGGTTTCCTTCATGACGGCCATCTCTCTCTAATCCAAGAAGCTCACAACCATGCACAACTTGTTGTCGTCTCTATCTACGTTAACCCTAGCCAATTTGCCCCTTCCGAGGATCTCTCAACCTATCCTTCAGATTTCGACGCCGACATTCGGAAGCTCATGACTGTTCCTGGAGGAGTTGATGTCATTTTCCATCCTCACAATCTCTATGACTATGGAGTTGAATCAGCTATGGATTGTGCTGGAATGGCCAACGTTTCTTGCTTGGAGGAATCCGGTTCAGGGCATGAGACATGGGTGAGGGTTGAGCGTTTGGAGAAGGGCATGTGTGGGAGAAGTAGGCCTGTTTTCTTTAGAGGGGTTGCTACGGTTGTTGCTAAGTTATTCAATATTGTTGACCCTGATGTTGCCTTGTTTGGGAAGAAGGATTATCAGCAATGGCGGATTATCGACCGGATGGTTCGAGATCTTGATTTTCCTGTAAAAATTGTGGGGTTTGAAATCGTGCGGGATGCTGATGGTCTTGCTATGAGTTCTCGCAATGTGCGGCTCTCACCTATAGAAAGACAAAAGGCATTGTCTATAAACAGATCATTGTAA

Coding sequence (CDS)

ATGGCGAGGAGGAGTCAGGGTATCATAATTACAGACAAGTACCAGATGAGGACATGGGCGAGATCCATGAGACACAATTCCATTGCTCTCGTTCCCACCATGGGTTTCCTTCATGACGGCCATCTCTCTCTAATCCAAGAAGCTCACAACCATGCACAACTTGTTGTCGTCTCTATCTACGTTAACCCTAGCCAATTTGCCCCTTCCGAGGATCTCTCAACCTATCCTTCAGATTTCGACGCCGACATTCGGAAGCTCATGACTGTTCCTGGAGGAGTTGATGTCATTTTCCATCCTCACAATCTCTATGACTATGGAGTTGAATCAGCTATGGATTGTGCTGGAATGGCCAACGTTTCTTGCTTGGAGGAATCCGGTTCAGGGCATGAGACATGGGTGAGGGTTGAGCGTTTGGAGAAGGGCATGTGTGGGAGAAGTAGGCCTGTTTTCTTTAGAGGGGTTGCTACGGTTGTTGCTAAGTTATTCAATATTGTTGACCCTGATGTTGCCTTGTTTGGGAAGAAGGATTATCAGCAATGGCGGATTATCGACCGGATGGTTCGAGATCTTGATTTTCCTGTAAAAATTGTGGGGTTTGAAATCGTGCGGGATGCTGATGGTCTTGCTATGAGTTCTCGCAATGTGCGGCTCTCACCTATAGAAAGACAAAAGGCATTGTCTATAAACAGATCATTGTAA

Protein sequence

MARRSQGIIITDKYQMRTWARSMRHNSIALVPTMGFLHDGHLSLIQEAHNHAQLVVVSIYVNPSQFAPSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMANVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDYQQWRIIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL*

Homology

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BLAST of Csa6G409330.1 vs. Swiss-Prot
Match: PANC_LOTJA (Pantoate--beta-alanine ligase OS=Lotus japonicus GN=PANC PE=1 SV=3)

HSP 1 Score: 337.0 bits (863), Expect = 1.6e-91
Identity = 160/231 (69.26%), Postives = 194/231 (83.98%), Query Frame = 1


Query: 8   IIITDKYQMRTWARSMRHNS--IALVPTMGFLHDGHLSLIQEAHNHAQLVVVSIYVNPSQ 67
           ++I+DK +MR W+RSMR     IALVPTMGFLH+GHLSL+++AHNHA LV VSIYVNP Q
Sbjct: 4   MVISDKDEMRKWSRSMRSQGKLIALVPTMGFLHEGHLSLVRDAHNHADLVAVSIYVNPGQ 63

Query: 68  FAPSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVE---SAMDCAGMANVSCL 127
           F+P+EDLS YPSDF  D++KLM+VPGGVDV+FHPHNLYDYG +   +  +C G   VSC+
Sbjct: 64  FSPTEDLSAYPSDFQGDLQKLMSVPGGVDVVFHPHNLYDYGGDGGDAVAECGGDGVVSCV 123

Query: 128 EE-SGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDYQQWR 187
           +  SG GHETWVR E+LEK +CG+SRPVFFRGVAT+V KLFNIV+PDVA+FGKKDYQQW+
Sbjct: 124 DRRSGFGHETWVRAEKLEKPLCGKSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDYQQWK 183

Query: 188 IIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL 233
           II RMVRDLDF +K++G E++R+ DGLAMSSRNV LSP ER+KA+SIN+SL
Sbjct: 184 IIQRMVRDLDFSIKVIGSEVIREKDGLAMSSRNVYLSPEEREKAVSINKSL 234

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BLAST of Csa6G409330.1 vs. Swiss-Prot
Match: PANC_ARATH (Pantoate--beta-alanine ligase OS=Arabidopsis thaliana GN=At5g48840 PE=1 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 2.6e-81
Identity = 152/230 (66.09%), Postives = 180/230 (78.26%), Query Frame = 1


Query: 9   IITDKYQMRTWARSMRHN--SIALVPTMGFLHDGHLSLIQEAHNHAQLVVVSIYVNPSQF 68
           +I DK  MR W+R+MR    +I LVPTMG+LH+GHLSL++++     + VVSIYVNP QF
Sbjct: 5   VIRDKDSMRKWSRAMRSQGKTIGLVPTMGYLHEGHLSLVRQSLALTDVTVVSIYVNPGQF 64

Query: 69  APSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMAN----VSCL 128
           +P+EDLSTYPSDF  D+ KL  + GG  V+F+P NLYDYG E+     G  N    VSC+
Sbjct: 65  SPTEDLSTYPSDFSGDLTKLAALSGGKVVVFNPKNLYDYGGETKKINDGGGNGGRVVSCV 124

Query: 129 EESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDYQQWRI 188
           EE G GHETW+RVERLEKG CG+SRPVFFRGVAT+V KLFNIV+PDVALFGKKDYQQWRI
Sbjct: 125 EEGGLGHETWIRVERLEKGFCGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQQWRI 184

Query: 189 IDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL 233
           I RMVRDL+F ++IVG +I R+ DGLAMSSRNVRLS  ERQ+ALSI+RSL
Sbjct: 185 IQRMVRDLNFGIEIVGSDIAREKDGLAMSSRNVRLSDEERQRALSISRSL 234

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BLAST of Csa6G409330.1 vs. Swiss-Prot
Match: PANC_ORYSJ (Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica GN=PANC PE=2 SV=2)

HSP 1 Score: 287.3 bits (734), Expect = 1.5e-76
Identity = 154/239 (64.44%), Postives = 182/239 (76.15%), Query Frame = 1


Query: 1   MARRSQGIIITDKYQMRTWARSMRHN--SIALVPTMGFLHDGHLSLIQEAHNHAQL---- 60
           MA   +  +I DK  MR W+R  R    ++A+VPTMG+LH GHLSLI  A   A      
Sbjct: 1   MAAPREPEVIRDKAAMRAWSRRRRAEGKTVAVVPTMGYLHQGHLSLISAAAAAASADPVA 60

Query: 61  VVVSIYVNPSQFAPSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCA 120
           +VV+IYVNPSQFAPSEDL+TYPSDF  D+RKL +  G VD +F+P +LY  G       +
Sbjct: 61  IVVTIYVNPSQFAPSEDLATYPSDFAGDLRKLAST-GVVDAVFNPPDLYVRGAGRRGAAS 120

Query: 121 GMANVSCLEES-GSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFG 180
           G A +SCLEE+ G GHETWVRVERLEKGMCG SRPVFFRGVAT+V+KLFNI++PDVA+FG
Sbjct: 121 GGA-ISCLEEAAGDGHETWVRVERLEKGMCGASRPVFFRGVATIVSKLFNIIEPDVAVFG 180

Query: 181 KKDYQQWRIIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL 233
           KKDYQQWR+I RMVRDLDF ++I+G EIVR+ADGLAMSSRNV LS  ER+KALSI+RSL
Sbjct: 181 KKDYQQWRVICRMVRDLDFAIEIIGSEIVREADGLAMSSRNVHLSREEREKALSISRSL 237

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BLAST of Csa6G409330.1 vs. Swiss-Prot
Match: PANC_GEOBB (Pantothenate synthetase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=panC PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 7.3e-52
Identity = 113/225 (50.22%), Postives = 145/225 (64.44%), Query Frame = 1


Query: 8   IIITDKYQMRTWARSMRHNSIALVPTMGFLHDGHLSLIQEAHNHAQLVVVSIYVNPSQFA 67
           I+I    QM+ +AR  R   IALVPTMG+LH+GH SL+ EA   A+ VV SI+VNP+QF 
Sbjct: 2   IVIHSVAQMQQYARDKR-GEIALVPTMGYLHEGHASLMVEARKRAKYVVASIFVNPTQFG 61

Query: 68  PSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMANVSCLEESGS 127
            +EDL +YP D + D  K +    GVDVIF P                       E    
Sbjct: 62  VNEDLDSYPRDLEHD--KEIAAKAGVDVIFAP--------------------IAAEMYPE 121

Query: 128 GHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDYQQWRIIDRMV 187
           G+++++ VE +   +CG SRP  FRGV TVVAKLFNIV P VALFGKKD+QQ  ++ RMV
Sbjct: 122 GYQSYLNVEEISAHLCGASRPGHFRGVTTVVAKLFNIVAPKVALFGKKDFQQLAVLRRMV 181

Query: 188 RDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL 233
           +D +F ++IVG  IVR+ADGLAMSSRN +LSP+ER+KAL ++RS+
Sbjct: 182 QDFNFDLEIVGMPIVREADGLAMSSRNTKLSPVEREKALCLSRSI 203

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BLAST of Csa6G409330.1 vs. Swiss-Prot
Match: PANC_GEOSM (Pantothenate synthetase OS=Geobacter sp. (strain M21) GN=panC PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 4.0e-50
Identity = 111/225 (49.33%), Postives = 142/225 (63.11%), Query Frame = 1


Query: 8   IIITDKYQMRTWARSMRHNSIALVPTMGFLHDGHLSLIQEAHNHAQLVVVSIYVNPSQFA 67
           I+I    QM+ +AR  R   IALVPTMG+LH+GH SL+ EA   A+ VV SI+VNP+QF 
Sbjct: 2   IVIHSVAQMQQYARE-RRGDIALVPTMGYLHEGHASLMVEARKRAKYVVASIFVNPTQFG 61

Query: 68  PSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMANVSCLEESGS 127
            +EDL +YP D + D  K +    GVDVIF P                    +  +    
Sbjct: 62  INEDLDSYPRDLEHD--KEIAAKAGVDVIFAP--------------------TAADMYPD 121

Query: 128 GHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDYQQWRIIDRMV 187
            +++++ VE +   +CG SRP  FRGV TVVAKLFNIV P VA FGKKD+QQ  +I RMV
Sbjct: 122 RYQSYLNVEEITVHLCGASRPGHFRGVTTVVAKLFNIVAPKVAFFGKKDFQQLAVIRRMV 181

Query: 188 RDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL 233
           RD +F ++IVG  IVR+ DGLAMSSRN +LSP ER+KAL ++RS+
Sbjct: 182 RDFNFDIEIVGMPIVREKDGLAMSSRNTKLSPAEREKALCLSRSI 203

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BLAST of Csa6G409330.1 vs. TrEMBL
Match: A0A0A0KJD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G409330 PE=4 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 3.0e-129
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1


Query: 1   MARRSQGIIITDKYQMRTWARSMRHNSIALVPTMGFLHDGHLSLIQEAHNHAQLVVVSIY 60
           MARRSQGIIITDKYQMRTWARSMRHNSIALVPTMGFLHDGHLSLIQEAHNHAQLVVVSIY
Sbjct: 1   MARRSQGIIITDKYQMRTWARSMRHNSIALVPTMGFLHDGHLSLIQEAHNHAQLVVVSIY 60

Query: 61  VNPSQFAPSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMANVS 120
           VNPSQFAPSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMANVS
Sbjct: 61  VNPSQFAPSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMANVS 120

Query: 121 CLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDYQQW 180
           CLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDYQQW
Sbjct: 121 CLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDYQQW 180

Query: 181 RIIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL 233
           RIIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL
Sbjct: 181 RIIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL 232

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BLAST of Csa6G409330.1 vs. TrEMBL
Match: A0A0A0LBL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G625640 PE=3 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 1.1e-107
Identity = 196/219 (89.50%), Postives = 207/219 (94.52%), Query Frame = 1


Query: 1   MARR-SQGIIITDKYQMRTWARSMRH--NSIALVPTMGFLHDGHLSLIQEAHNHAQLVVV 60
           MAR+ +Q IIITDKYQMRTWAR+MR   N+IALVPTMGFLHDGHLSLIQEAHNH+QLVVV
Sbjct: 173 MARKENQTIIITDKYQMRTWARTMRSLSNTIALVPTMGFLHDGHLSLIQEAHNHSQLVVV 232

Query: 61  SIYVNPSQFAPSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMA 120
           SIYVNPSQFAPSEDLSTYPSDFD DIRKLM VPGGVDV+FHPHNLYDYGVESAMDCAGM 
Sbjct: 233 SIYVNPSQFAPSEDLSTYPSDFDGDIRKLMDVPGGVDVVFHPHNLYDYGVESAMDCAGMP 292

Query: 121 NVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDY 180
           +VSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVA+FGKKDY
Sbjct: 293 DVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVAVFGKKDY 352

Query: 181 QQWRIIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVR 217
           QQWRII RMVRDLDF + +VGFEIVRDADGLAMSSRN +
Sbjct: 353 QQWRIIRRMVRDLDFSINVVGFEIVRDADGLAMSSRNCK 391

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BLAST of Csa6G409330.1 vs. TrEMBL
Match: M5VKJ0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008786mg PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 2.2e-92
Identity = 170/238 (71.43%), Postives = 198/238 (83.19%), Query Frame = 1


Query: 9   IITDKYQMRTWARSMRHN--SIALVPTMGFLHDGHLSLIQEAHNHAQLVVVSIYVNPSQF 68
           II DK QMR W+R+MR    ++ LVPTMG+LHDGH+SLI+EAHNH  L+VVSIYVNP QF
Sbjct: 8   IIRDKDQMRRWSRAMRSQGKTVGLVPTMGYLHDGHVSLIREAHNHTDLIVVSIYVNPGQF 67

Query: 69  APSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMAN-------- 128
           +PSEDLSTYPSDF  DI+KLM VPGGVDV+F+PHNLYDYG     + A  A+        
Sbjct: 68  SPSEDLSTYPSDFHGDIQKLMAVPGGVDVVFNPHNLYDYGTSKNANAAARASDDARVGNG 127

Query: 129 ----VSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGK 188
               VSC+EE+G GHETWVRVERLEKGMCG+SRPVFFRGVATVV+KLFNIV+PDVA+FGK
Sbjct: 128 GNGVVSCVEENGLGHETWVRVERLEKGMCGQSRPVFFRGVATVVSKLFNIVEPDVAVFGK 187

Query: 189 KDYQQWRIIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL 233
           KDYQQWRII RMVRDLDF ++++G EIVR+ DGLAMSSRNVRLSP ER+KALSI++SL
Sbjct: 188 KDYQQWRIIQRMVRDLDFGIRVIGSEIVREKDGLAMSSRNVRLSPEEREKALSISKSL 245

[Close]

BLAST of Csa6G409330.1 vs. TrEMBL
Match: F6HZY6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g05780 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 6.5e-92
Identity = 171/234 (73.08%), Postives = 192/234 (82.05%), Query Frame = 1


Query: 9   IITDKYQMRTWARSMRHN--SIALVPTMGFLHDGHLSLIQEAHNHAQLVVVSIYVNPSQF 68
           II DK +MR W+R MR    +I LVPTMG+LH GH+SLI+EAH H  L+VVSIYVNP QF
Sbjct: 11  IIRDKDEMRRWSRRMRSQGKTIGLVPTMGYLHQGHISLIKEAHKHTDLIVVSIYVNPGQF 70

Query: 69  APSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVES----AMDC----AGMAN 128
           APSEDLSTYPSDF  D++KLM VPGGVD +FHPHNLYDYG       + DC     G   
Sbjct: 71  APSEDLSTYPSDFHGDLQKLMAVPGGVDAVFHPHNLYDYGSVGGGGRSGDCDVREEGKGV 130

Query: 129 VSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDYQ 188
           +SCLEE G GHETWVRVERLEK MCG+SRPVFFRGVAT+V+KLFNIV+PDVA+FGKKDYQ
Sbjct: 131 ISCLEERGFGHETWVRVERLEKSMCGKSRPVFFRGVATIVSKLFNIVEPDVAVFGKKDYQ 190

Query: 189 QWRIIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL 233
           QWRII RMVRDLDF +K++G EIVRDADGLAMSSRNV LSP ER+KALSINRSL
Sbjct: 191 QWRIISRMVRDLDFAIKVIGSEIVRDADGLAMSSRNVHLSPEEREKALSINRSL 244

[Close]

BLAST of Csa6G409330.1 vs. TrEMBL
Match: W9S339_9ROSA (Pantoate--beta-alanine ligase OS=Morus notabilis GN=L484_015198 PE=3 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.6e-90
Identity = 172/236 (72.88%), Postives = 195/236 (82.63%), Query Frame = 1


Query: 9   IITDKYQMRTWARSMRHN--SIALVPTMGFLHDGHLSLIQEAHNHAQLVVVSIYVNPSQF 68
           IITDK QMR W+R MR    +I  VPTMGFLH+GH++L++EA NHA LVVVSIYVNP QF
Sbjct: 8   IITDKTQMRKWSRGMRSQGKTIGFVPTMGFLHEGHIALVKEARNHADLVVVSIYVNPGQF 67

Query: 69  APSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYG-----VESAMDCAG-----M 128
           +PSEDLSTYPSD + DI+KLM VPGGVDV+FHPHNLYDYG     VE+     G     +
Sbjct: 68  SPSEDLSTYPSDINGDIQKLMAVPGGVDVVFHPHNLYDYGTTNPSVENVNGSGGDEERNV 127

Query: 129 ANVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKD 188
             VSCLE +G GHETWV+VERLEKGMCG+SRPVFFRGVATVV KLFNIVDPDVALFGKKD
Sbjct: 128 GVVSCLENNGLGHETWVKVERLEKGMCGKSRPVFFRGVATVVTKLFNIVDPDVALFGKKD 187

Query: 189 YQQWRIIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL 233
           YQQ RII RMVRDLDF +KI+G EIVR++DGLAMSSRNV LSP ER++ALSI+RSL
Sbjct: 188 YQQLRIIQRMVRDLDFAIKIIGSEIVRESDGLAMSSRNVHLSPEEREQALSISRSL 243

[Close]

BLAST of Csa6G409330.1 vs. TAIR10
Match: AT5G48840.1 (AT5G48840.1 homolog of bacterial PANC)

HSP 1 Score: 303.1 bits (775), Expect = 1.4e-82
Identity = 152/230 (66.09%), Postives = 180/230 (78.26%), Query Frame = 1


Query: 9   IITDKYQMRTWARSMRHN--SIALVPTMGFLHDGHLSLIQEAHNHAQLVVVSIYVNPSQF 68
           +I DK  MR W+R+MR    +I LVPTMG+LH+GHLSL++++     + VVSIYVNP QF
Sbjct: 5   VIRDKDSMRKWSRAMRSQGKTIGLVPTMGYLHEGHLSLVRQSLALTDVTVVSIYVNPGQF 64

Query: 69  APSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMAN----VSCL 128
           +P+EDLSTYPSDF  D+ KL  + GG  V+F+P NLYDYG E+     G  N    VSC+
Sbjct: 65  SPTEDLSTYPSDFSGDLTKLAALSGGKVVVFNPKNLYDYGGETKKINDGGGNGGRVVSCV 124

Query: 129 EESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDYQQWRI 188
           EE G GHETW+RVERLEKG CG+SRPVFFRGVAT+V KLFNIV+PDVALFGKKDYQQWRI
Sbjct: 125 EEGGLGHETWIRVERLEKGFCGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQQWRI 184

Query: 189 IDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL 233
           I RMVRDL+F ++IVG +I R+ DGLAMSSRNVRLS  ERQ+ALSI+RSL
Sbjct: 185 IQRMVRDLNFGIEIVGSDIAREKDGLAMSSRNVRLSDEERQRALSISRSL 234

[Close]

BLAST of Csa6G409330.1 vs. NCBI nr
Match: gi|778716155|ref|XP_004140085.2| (PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase-like [Cucumis sativus])

HSP 1 Score: 469.2 bits (1206), Expect = 4.3e-129
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1


Query: 1   MARRSQGIIITDKYQMRTWARSMRHNSIALVPTMGFLHDGHLSLIQEAHNHAQLVVVSIY 60
           MARRSQGIIITDKYQMRTWARSMRHNSIALVPTMGFLHDGHLSLIQEAHNHAQLVVVSIY
Sbjct: 1   MARRSQGIIITDKYQMRTWARSMRHNSIALVPTMGFLHDGHLSLIQEAHNHAQLVVVSIY 60

Query: 61  VNPSQFAPSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMANVS 120
           VNPSQFAPSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMANVS
Sbjct: 61  VNPSQFAPSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMANVS 120

Query: 121 CLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDYQQW 180
           CLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDYQQW
Sbjct: 121 CLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDYQQW 180

Query: 181 RIIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL 233
           RIIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL
Sbjct: 181 RIIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL 232

[Close]

BLAST of Csa6G409330.1 vs. NCBI nr
Match: gi|700192672|gb|KGN47876.1| (hypothetical protein Csa_6G409330 [Cucumis sativus])

HSP 1 Score: 469.2 bits (1206), Expect = 4.3e-129
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1


Query: 1   MARRSQGIIITDKYQMRTWARSMRHNSIALVPTMGFLHDGHLSLIQEAHNHAQLVVVSIY 60
           MARRSQGIIITDKYQMRTWARSMRHNSIALVPTMGFLHDGHLSLIQEAHNHAQLVVVSIY
Sbjct: 1   MARRSQGIIITDKYQMRTWARSMRHNSIALVPTMGFLHDGHLSLIQEAHNHAQLVVVSIY 60

Query: 61  VNPSQFAPSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMANVS 120
           VNPSQFAPSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMANVS
Sbjct: 61  VNPSQFAPSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMANVS 120

Query: 121 CLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDYQQW 180
           CLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDYQQW
Sbjct: 121 CLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDYQQW 180

Query: 181 RIIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL 233
           RIIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL
Sbjct: 181 RIIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL 232

[Close]

BLAST of Csa6G409330.1 vs. NCBI nr
Match: gi|778682111|ref|XP_004152022.2| (PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase [Cucumis sativus])

HSP 1 Score: 424.5 bits (1090), Expect = 1.2e-115
Identity = 212/235 (90.21%), Postives = 222/235 (94.47%), Query Frame = 1


Query: 1   MARR-SQGIIITDKYQMRTWARSMRH--NSIALVPTMGFLHDGHLSLIQEAHNHAQLVVV 60
           MAR+ +Q IIITDKYQMRTWAR+MR   N+IALVPTMGFLHDGHLSLIQEAHNH+QLVVV
Sbjct: 20  MARKENQTIIITDKYQMRTWARTMRSLSNTIALVPTMGFLHDGHLSLIQEAHNHSQLVVV 79

Query: 61  SIYVNPSQFAPSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMA 120
           SIYVNPSQFAPSEDLSTYPSDFD DIRKLM VPGGVDV+FHPHNLYDYGVESAMDCAGM 
Sbjct: 80  SIYVNPSQFAPSEDLSTYPSDFDGDIRKLMDVPGGVDVVFHPHNLYDYGVESAMDCAGMP 139

Query: 121 NVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDY 180
           +VSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVA+FGKKDY
Sbjct: 140 DVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVAVFGKKDY 199

Query: 181 QQWRIIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL 233
           QQWRII RMVRDLDF + +VGFEIVRDADGLAMSSRNVRLSP ERQKALSINR L
Sbjct: 200 QQWRIIRRMVRDLDFSINVVGFEIVRDADGLAMSSRNVRLSPEERQKALSINRXL 254

[Close]

BLAST of Csa6G409330.1 vs. NCBI nr
Match: gi|659130281|ref|XP_008465087.1| (PREDICTED: pantoate--beta-alanine ligase [Cucumis melo])

HSP 1 Score: 407.5 bits (1046), Expect = 1.5e-110
Identity = 206/235 (87.66%), Postives = 216/235 (91.91%), Query Frame = 1


Query: 1   MARR-SQGIIITDKYQMRTWARSMRH--NSIALVPTMGFLHDGHLSLIQEAHNHAQLVVV 60
           MAR+ +Q +IITDK QMRTWA+SMR   N+IALVPTMG LHDGHLSLIQEA NH+ LVVV
Sbjct: 1   MARKENQTLIITDKNQMRTWAKSMRSLLNTIALVPTMGSLHDGHLSLIQEARNHSHLVVV 60

Query: 61  SIYVNPSQFAPSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMA 120
           SIYVNPSQFAPSEDLSTYPSDFD DIRKL  VPGGVDV+FHPHNLYDYGVESA DCAGMA
Sbjct: 61  SIYVNPSQFAPSEDLSTYPSDFDGDIRKLNAVPGGVDVVFHPHNLYDYGVESATDCAGMA 120

Query: 121 NVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDY 180
           +VSCLEESGS HETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDY
Sbjct: 121 DVSCLEESGSSHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDY 180

Query: 181 QQWRIIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVRLSPIERQKALSINRSL 233
           QQWRII RMVRDLDF + I+GFE VRDADGLAMSSRNVRLSP ERQKALSINRSL
Sbjct: 181 QQWRIIRRMVRDLDFSINILGFETVRDADGLAMSSRNVRLSPEERQKALSINRSL 235

[Close]

BLAST of Csa6G409330.1 vs. NCBI nr
Match: gi|700203216|gb|KGN58349.1| (hypothetical protein Csa_3G625640 [Cucumis sativus])

HSP 1 Score: 397.5 bits (1020), Expect = 1.6e-107
Identity = 196/219 (89.50%), Postives = 207/219 (94.52%), Query Frame = 1


Query: 1   MARR-SQGIIITDKYQMRTWARSMRH--NSIALVPTMGFLHDGHLSLIQEAHNHAQLVVV 60
           MAR+ +Q IIITDKYQMRTWAR+MR   N+IALVPTMGFLHDGHLSLIQEAHNH+QLVVV
Sbjct: 173 MARKENQTIIITDKYQMRTWARTMRSLSNTIALVPTMGFLHDGHLSLIQEAHNHSQLVVV 232

Query: 61  SIYVNPSQFAPSEDLSTYPSDFDADIRKLMTVPGGVDVIFHPHNLYDYGVESAMDCAGMA 120
           SIYVNPSQFAPSEDLSTYPSDFD DIRKLM VPGGVDV+FHPHNLYDYGVESAMDCAGM 
Sbjct: 233 SIYVNPSQFAPSEDLSTYPSDFDGDIRKLMDVPGGVDVVFHPHNLYDYGVESAMDCAGMP 292

Query: 121 NVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDY 180
           +VSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVA+FGKKDY
Sbjct: 293 DVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVAVFGKKDY 352

Query: 181 QQWRIIDRMVRDLDFPVKIVGFEIVRDADGLAMSSRNVR 217
           QQWRII RMVRDLDF + +VGFEIVRDADGLAMSSRN +
Sbjct: 353 QQWRIIRRMVRDLDFSINVVGFEIVRDADGLAMSSRNCK 391

The following BLAST results are available for this feature:

BLAST of Csa6G409330.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PANC_LOTJA	1.6e-91	69.26	Pantoate--beta-alanine ligase OS=Lotus japonicus GN=PANC PE=1 SV=3	[more]
PANC_ARATH	2.6e-81	66.09	Pantoate--beta-alanine ligase OS=Arabidopsis thaliana GN=At5g48840 PE=1 SV=1	[more]
PANC_ORYSJ	1.5e-76	64.44	Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica GN=PANC PE=2 SV=2	[more]
PANC_GEOBB	7.3e-52	50.22	Pantothenate synthetase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / ...	[more]
PANC_GEOSM	4.0e-50	49.33	Pantothenate synthetase OS=Geobacter sp. (strain M21) GN=panC PE=3 SV=1	[more]

BLAST of Csa6G409330.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJD2_CUCSA	3.0e-129	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G409330 PE=4 SV=1	[more]
A0A0A0LBL8_CUCSA	1.1e-107	89.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G625640 PE=3 SV=1	[more]
M5VKJ0_PRUPE	2.2e-92	71.43	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008786mg PE=3 SV=1	[more]
F6HZY6_VITVI	6.5e-92	73.08	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g05780 PE=3 SV=...	[more]
W9S339_9ROSA	1.6e-90	72.88	Pantoate--beta-alanine ligase OS=Morus notabilis GN=L484_015198 PE=3 SV=1	[more]

BLAST of Csa6G409330.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48840.1	1.4e-82	66.09	homolog of bacterial PANC	[more]

BLAST of Csa6G409330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778716155\|ref\|XP_004140085.2\|	4.3e-129	100.00	PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase-like [Cucumis sati...	[more]
gi\|700192672\|gb\|KGN47876.1\|	4.3e-129	100.00	hypothetical protein Csa_6G409330 [Cucumis sativus]	[more]
gi\|778682111\|ref\|XP_004152022.2\|	1.2e-115	90.21	PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase [Cucumis sativus]	[more]
gi\|659130281\|ref\|XP_008465087.1\|	1.5e-110	87.66	PREDICTED: pantoate--beta-alanine ligase [Cucumis melo]	[more]
gi\|700203216\|gb\|KGN58349.1\|	1.6e-107	89.50	hypothetical protein Csa_3G625640 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003721	Pantoate_ligase
IPR004821	Cyt_trans-like
IPR014729	Rossmann-like_a/b/a_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0004592	pantoate-beta-alanine ligase activity
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015940	pantothenate biosynthetic process
GO:0009058	biosynthetic process

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0015940	pantothenate biosynthetic process
biological_process	GO:0019482	beta-alanine metabolic process
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0004592	pantoate-beta-alanine ligase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0042803	protein homodimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G409330	Csa6G409330	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa6G409330.1	Csa6G409330.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G409330.1.cds3	Csa6G409330.1.cds3	CDS
Csa6G409330.1.cds2	Csa6G409330.1.cds2	CDS
Csa6G409330.1.cds1	Csa6G409330.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003721	Pantoate-beta-alanine ligase	PANTHER	PTHR21299:SF1	PANTOATE--BETA-ALANINE LIGASE	coord: 1..111 score: 7.8E-106coord: 129..232 score: 7.8E
IPR003721	Pantoate-beta-alanine ligase	PFAM	PF02569	Pantoate_ligase	coord: 9..232 score: 1.7
IPR003721	Pantoate-beta-alanine ligase	TIGRFAMs	TIGR00018	TIGR00018	coord: 10..232 score: 8.3
IPR004821	Cytidyltransferase-like domain	TIGRFAMs	TIGR00125	TIGR00125	coord: 29..72 score: 3.
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	G3DSA:3.40.50.620		coord: 6..199 score: 9.7
None	No IPR available	GENE3D	G3DSA:3.30.1300.10		coord: 201..232 score: 4.3
None	No IPR available	PANTHER	PTHR21299	CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE	coord: 1..111 score: 7.8E-106coord: 129..232 score: 7.8E
None	No IPR available	unknown	SSF52374	Nucleotidylyl transferase	coord: 8..232 score: 6.7