Csa6G367140.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G367140.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 16846278 .. 16846676 (-)
Sequence length399
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCAAAGGGATCCAAAGGCATCAAAGCTTGGGAATTAATGGAGGATTTTGGAGCAGACGCAGCTGAGTTTCCAGGCTTTCAAACCAATGTTGCGCATAGAGACGACATCGTTTACCGGAGGTCGTTGACTCGGTTGCAACGTTGTGCTCCCCACCCTCTCTCGTTGCCACGCCCTACCTCTTTTCCGTCGTGTGGTGGTGCATCGAAACAACCTCCTCCTCTGGTTGAAAACAACAACAATTGTTCTTCTTTTTCTTCAACATCAAATAATGCATCTTTTCATTGTATAGATCCGATCCCATTACTTTCACCCCTTGTATGTCCGTCATTGTTTGAGTCTCACTGTGTCATAGAAAAAAATGTTACTACAAAGTCTAGTCGAACCAACTTGTAA

mRNA sequence

ATGGAAGCAAAGGGATCCAAAGGCATCAAAGCTTGGGAATTAATGGAGGATTTTGGAGCAGACGCAGCTGAGTTTCCAGGCTTTCAAACCAATGTTGCGCATAGAGACGACATCGTTTACCGGAGGTCGTTGACTCGGTTGCAACGTTGTGCTCCCCACCCTCTCTCGTTGCCACGCCCTACCTCTTTTCCGTCGTGTGGTGGTGCATCGAAACAACCTCCTCCTCTGGTTGAAAACAACAACAATTGTTCTTCTTTTTCTTCAACATCAAATAATGCATCTTTTCATTGTATAGATCCGATCCCATTACTTTCACCCCTTGTATGTCCGTCATTGTTTGAGTCTCACTGTGTCATAGAAAAAAATGTTACTACAAAGTCTAGTCGAACCAACTTGTAA

Coding sequence (CDS)

ATGGAAGCAAAGGGATCCAAAGGCATCAAAGCTTGGGAATTAATGGAGGATTTTGGAGCAGACGCAGCTGAGTTTCCAGGCTTTCAAACCAATGTTGCGCATAGAGACGACATCGTTTACCGGAGGTCGTTGACTCGGTTGCAACGTTGTGCTCCCCACCCTCTCTCGTTGCCACGCCCTACCTCTTTTCCGTCGTGTGGTGGTGCATCGAAACAACCTCCTCCTCTGGTTGAAAACAACAACAATTGTTCTTCTTTTTCTTCAACATCAAATAATGCATCTTTTCATTGTATAGATCCGATCCCATTACTTTCACCCCTTGTATGTCCGTCATTGTTTGAGTCTCACTGTGTCATAGAAAAAAATGTTACTACAAAGTCTAGTCGAACCAACTTGTAA

Protein sequence

MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTKSSRTNL*
Homology
[Close]
BLAST of Csa6G367140.1 vs. TrEMBL
Match: A0A0A0KDQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367140 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 7.3e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 

Query: 1   MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRP 60
           MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRP
Sbjct: 1   MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRP 60

Query: 61  TSFPSCGGASKQPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIE 120
           TSFPSCGGASKQPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIE
Sbjct: 61  TSFPSCGGASKQPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIE 120

Query: 121 KNVTTKSSRTNL 133
           KNVTTKSSRTNL
Sbjct: 121 KNVTTKSSRTNL 132

[Close]
BLAST of Csa6G367140.1 vs. TrEMBL
Match: W9QP10_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026473 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.3e-14
Identity = 51/102 (50.00%), Postives = 63/102 (61.76%), Query Frame = 1 

Query: 23  AEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPPPLVENNNN 82
           +EFPGFQT  AH+DDIV +R L+RLQR AP PL L +P              PL  + N 
Sbjct: 7   SEFPGFQTYNAHKDDIVLKRRLSRLQRRAPCPLQLVKPNHDHVPSSFHGTQKPLGSSLNP 66

Query: 83  CSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVT 125
             S +S+S + S    DPIPLLSPLV PSL ES C+ ++NVT
Sbjct: 67  SPSTTSSSFDRS---KDPIPLLSPLVLPSLLESACIQQENVT 105

[Close]
BLAST of Csa6G367140.1 vs. TrEMBL
Match: A0A061E9C9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011454 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-10
Identity = 50/120 (41.67%), Postives = 72/120 (60.00%), Query Frame = 1 

Query: 14  LMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSL-PRPTSFPSCGGASKQ 73
           +MED GA   EFPGF+  V H+D++V+RR L+RLQR AP PL + P  +S  S   AS+ 
Sbjct: 6   IMEDSGA---EFPGFKICV-HKDELVFRRPLSRLQRRAPRPLQVKPNASSLESKAVASQV 65

Query: 74  PPPLVENNNNCSSF------SSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTK 127
               +  +++ S+       S++S N+ +   DPIPLLSPLV P L ES  + ++  T K
Sbjct: 66  MDCSLNPSSSSSAAAAAAATSASSFNSFYQSKDPIPLLSPLVLPCLLESSYLHQEGNTAK 121

[Close]
BLAST of Csa6G367140.1 vs. TrEMBL
Match: B9HWU9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14850g PE=4 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-10
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 1 

Query: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFP-SCGGASKQP 74
           MED G    EFPGFQT V H++++ YRR L+RLQR AP  L +      P  C  A K  
Sbjct: 1   MEDHGE---EFPGFQTCV-HKEELEYRRPLSRLQRRAPCQLQIKANNKAPLECKSAPKI- 60

Query: 75  PPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKN 123
                   + +S +++S N+ +H  DPIPLLSPLV PSL ES  + + N
Sbjct: 61  --------SSASAATSSFNSFYHSKDPIPLLSPLVLPSLLESSYIQQGN 96

[Close]
BLAST of Csa6G367140.1 vs. TrEMBL
Match: V4TMM9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033881mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-09
Identity = 52/121 (42.98%), Postives = 66/121 (54.55%), Query Frame = 1 

Query: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPS---CGGASK 74
           MED GA   EFPGFQ  V H+++  ++R L+RLQ+ AP PL L +P +  S   C  ASK
Sbjct: 1   MEDSGA---EFPGFQICV-HKEEYAFQRPLSRLQKRAPCPLQLIKPNNKASSLECKSASK 60

Query: 75  --------QPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNV 125
                            ++ SSFSS S N      DPIPLLSPLV PS+ ES   I++  
Sbjct: 61  AMGYNMNSSSSAAAAAKSSSSSFSSFSQNK-----DPIPLLSPLVLPSMLESSYNIQEGN 112

[Close]
BLAST of Csa6G367140.1 vs. TAIR10
Match: AT1G69050.1 (AT1G69050.1 unknown protein)

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-11
Identity = 50/117 (42.74%), Postives = 59/117 (50.43%), Query Frame = 1 

Query: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLT-RLQRCAPHPLSLPRPTSFPSCGGASKQP 74
           MED G     FPGF+  V H DD V+RRSL+ RLQR AP PL LP             +P
Sbjct: 1   MEDSGRKGDPFPGFEMRV-HNDDCVFRRSLSCRLQRRAPCPLLLP------------PRP 60

Query: 75  PPLVENNNNCSSFSSTSNNASFHC---IDPIPLLSPLVCPSLFESHCVIEKNVTTKS 128
           PP  E     +  ++T  + S  C    DPIPLLSPLV PS+      ++ N TT S
Sbjct: 61  PPSAE-----APSTTTGVSTSTFCQNGTDPIPLLSPLVLPSM------LQPNPTTTS 93

[Close]
BLAST of Csa6G367140.1 vs. NCBI nr
Match: gi|700192464|gb|KGN47668.1| (hypothetical protein Csa_6G367140 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 1.1e-71
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 

Query: 1   MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRP 60
           MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRP
Sbjct: 1   MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRP 60

Query: 61  TSFPSCGGASKQPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIE 120
           TSFPSCGGASKQPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIE
Sbjct: 61  TSFPSCGGASKQPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIE 120

Query: 121 KNVTTKSSRTNL 133
           KNVTTKSSRTNL
Sbjct: 121 KNVTTKSSRTNL 132

[Close]
BLAST of Csa6G367140.1 vs. NCBI nr
Match: gi|1009154503|ref|XP_015895207.1| (PREDICTED: uncharacterized protein LOC107429071 [Ziziphus jujuba])

HSP 1 Score: 89.7 bits (221), Expect = 4.1e-15
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 1 

Query: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLT-RLQRCAPHPLSLPRPT-SFPSCGGASKQ 74
           ME+ G +  +FPGFQT  AH+DDIV+RR L+ RLQR AP PL + +P  S  S  G  K 
Sbjct: 1   MEENGGE--QFPGFQT-CAHKDDIVFRRCLSHRLQRRAPCPLQVMKPNVSSASFHGGQKS 60

Query: 75  PPPLVENNNNCSSFSSTSN-NASFHCIDPIPLLSPLVCPSLFESHCVIEKNVT 125
                 N+++ SS SS+S+ N+ +H  DPIPLLSPLV PSL ES C+ ++N T
Sbjct: 61  LGTSGTNSSSSSSSSSSSSLNSFYHSKDPIPLLSPLVLPSLLESACIQQENAT 110

[Close]
BLAST of Csa6G367140.1 vs. NCBI nr
Match: gi|703081200|ref|XP_010091625.1| (hypothetical protein L484_026473 [Morus notabilis])

HSP 1 Score: 85.5 bits (210), Expect = 7.7e-14
Identity = 51/102 (50.00%), Postives = 63/102 (61.76%), Query Frame = 1 

Query: 23  AEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPPPLVENNNN 82
           +EFPGFQT  AH+DDIV +R L+RLQR AP PL L +P              PL  + N 
Sbjct: 7   SEFPGFQTYNAHKDDIVLKRRLSRLQRRAPCPLQLVKPNHDHVPSSFHGTQKPLGSSLNP 66

Query: 83  CSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVT 125
             S +S+S + S    DPIPLLSPLV PSL ES C+ ++NVT
Sbjct: 67  SPSTTSSSFDRS---KDPIPLLSPLVLPSLLESACIQQENVT 105

[Close]
BLAST of Csa6G367140.1 vs. NCBI nr
Match: gi|590698631|ref|XP_007045768.1| (Uncharacterized protein TCM_011454 [Theobroma cacao])

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-10
Identity = 50/120 (41.67%), Postives = 72/120 (60.00%), Query Frame = 1 

Query: 14  LMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSL-PRPTSFPSCGGASKQ 73
           +MED GA   EFPGF+  V H+D++V+RR L+RLQR AP PL + P  +S  S   AS+ 
Sbjct: 6   IMEDSGA---EFPGFKICV-HKDELVFRRPLSRLQRRAPRPLQVKPNASSLESKAVASQV 65

Query: 74  PPPLVENNNNCSSF------SSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTK 127
               +  +++ S+       S++S N+ +   DPIPLLSPLV P L ES  + ++  T K
Sbjct: 66  MDCSLNPSSSSSAAAAAAATSASSFNSFYQSKDPIPLLSPLVLPCLLESSYLHQEGNTAK 121

[Close]
BLAST of Csa6G367140.1 vs. NCBI nr
Match: gi|566190878|ref|XP_002314918.2| (hypothetical protein POPTR_0010s14850g [Populus trichocarpa])

HSP 1 Score: 72.4 bits (176), Expect = 6.7e-10
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 1 

Query: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFP-SCGGASKQP 74
           MED G    EFPGFQT V H++++ YRR L+RLQR AP  L +      P  C  A K  
Sbjct: 1   MEDHGE---EFPGFQTCV-HKEELEYRRPLSRLQRRAPCQLQIKANNKAPLECKSAPKI- 60

Query: 75  PPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKN 123
                   + +S +++S N+ +H  DPIPLLSPLV PSL ES  + + N
Sbjct: 61  --------SSASAATSSFNSFYHSKDPIPLLSPLVLPSLLESSYIQQGN 96

The following BLAST results are available for this feature:
BLAST of Csa6G367140.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDQ2_CUCSA7.3e-72100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367140 PE=4 SV=1[more]
W9QP10_9ROSA5.3e-1450.00Uncharacterized protein OS=Morus notabilis GN=L484_026473 PE=4 SV=1[more]
A0A061E9C9_THECC2.7e-1041.67Uncharacterized protein OS=Theobroma cacao GN=TCM_011454 PE=4 SV=1[more]
B9HWU9_POPTR4.7e-1044.04Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14850g PE=4 SV=2[more]
V4TMM9_9ROSI1.8e-0942.98Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033881mg PE=4 SV=1[more]
BLAST of Csa6G367140.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G69050.12.2e-1142.74 unknown protein[more]
BLAST of Csa6G367140.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192464|gb|KGN47668.1|1.1e-71100.00hypothetical protein Csa_6G367140 [Cucumis sativus][more]
gi|1009154503|ref|XP_015895207.1|4.1e-1550.44PREDICTED: uncharacterized protein LOC107429071 [Ziziphus jujuba][more]
gi|703081200|ref|XP_010091625.1|7.7e-1450.00hypothetical protein L484_026473 [Morus notabilis][more]
gi|590698631|ref|XP_007045768.1|3.9e-1041.67Uncharacterized protein TCM_011454 [Theobroma cacao][more]
gi|566190878|ref|XP_002314918.2|6.7e-1044.04hypothetical protein POPTR_0010s14850g [Populus trichocarpa][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G367140Csa6G367140gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G367140.1Csa6G367140.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G367140.1.cds1Csa6G367140.1.cds1CDS