Csa6G364110.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G364110.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	30S ribosomal protein S14, chloroplastic; contains IPR001209 (Ribosomal protein S14)
Location	Chr6 : 16469083 .. 16469601 (-)
Sequence length	255

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAAGGTAAGATCTATAGTTTTCTAATTTGGAGATTGTGGAGGAACTTATTGTAATTTTGAAGTATTTTGATAACGTGAACTACATCTCTTGTTTGTGAGTTTTAGTTTGGATACATTTAAATATTGATCGGCTTCCCATGCTTAGACCGCATAGTTTGATGGTTTAGGTTAACATATATAATACATGGCATATAGTTATAGGTTAGTCTCTAAGAAAAGCGATAGACCACCTTTTGATTCAAAGGGAGAAGAGGCAAAAATTGGAACAAAAATATCATTTGATTCGTCAATCCTTAAAAAACGAAATCGTTGAGTGAGAAATGGAAAATTCATGGAAAGTTACAATCCCCACCGCGTAATAGTGCACCCACACGTCTTCATCGATGTTTTTTAACCGGAAGACCGAGAGCAAACTATCAAGACCTTGGGTTCTCTGGACACATACTTCGTGAAATGGTTCATGCATGCTTGTTGCTTGGGATGACAATGAAGAATATTATTCTATTGTTCTAA

mRNA sequence

ATGGAAAAAGCGATAGACCACCTTTTGATTCAAAGGGAGAAGAGGCAAAAATTGGAACAAAAATATCATTTGATTCGTCAATCCTTAAAAAACGAAATCGTTGATGCACCCACACGTCTTCATCGATGTTTTTTAACCGGAAGACCGAGAGCAAACTATCAAGACCTTGGGTTCTCTGGACACATACTTCGTGAAATGGTTCATGCATGCTTGTTGCTTGGGATGACAATGAAGAATATTATTCTATTGTTCTAA

Coding sequence (CDS)

ATGGAAAAAGCGATAGACCACCTTTTGATTCAAAGGGAGAAGAGGCAAAAATTGGAACAAAAATATCATTTGATTCGTCAATCCTTAAAAAACGAAATCGTTGATGCACCCACACGTCTTCATCGATGTTTTTTAACCGGAAGACCGAGAGCAAACTATCAAGACCTTGGGTTCTCTGGACACATACTTCGTGAAATGGTTCATGCATGCTTGTTGCTTGGGATGACAATGAAGAATATTATTCTATTGTTCTAA

Protein sequence

MEKAIDHLLIQREKRQKLEQKYHLIRQSLKNEIVDAPTRLHRCFLTGRPRANYQDLGFSGHILREMVHACLLLGMTMKNIILLF*

Homology

[Close]

BLAST of Csa6G364110.1 vs. Swiss-Prot
Match: RR14_CUCSA (30S ribosomal protein S14, chloroplastic OS=Cucumis sativus GN=rps14 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.7e-22
Identity = 61/91 (67.03%), Postives = 60/91 (65.93%), Query Frame = 1


Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYHLIRQSLKNEI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHLIRQSLKNEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

[Close]

BLAST of Csa6G364110.1 vs. Swiss-Prot
Match: RR14_FAGEA (30S ribosomal protein S14, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rps14 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.6e-20
Identity = 57/91 (62.64%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 9  LIQRE-KRQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQRE KR+KLEQKYHLIR+SLK EI                       APTRLH RCFL
Sbjct: 6  LIQREQKRKKLEQKYHLIRRSLKKEISKVTSLNEKWEIHGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVH CLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHTCLLPGAT 96

[Close]

BLAST of Csa6G364110.1 vs. Swiss-Prot
Match: RR14_SOLBU (30S ribosomal protein S14, chloroplastic OS=Solanum bulbocastanum GN=rps14 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-19
Identity = 57/91 (62.64%), Postives = 57/91 (62.64%), Query Frame = 1


Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYH IR+S K EI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHSIRRSSKKEISKVPSLSDKWEIYGKLQSLPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

[Close]

BLAST of Csa6G364110.1 vs. Swiss-Prot
Match: RR14_NICTO (30S ribosomal protein S14, chloroplastic OS=Nicotiana tomentosiformis GN=rps14 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-19
Identity = 57/91 (62.64%), Postives = 57/91 (62.64%), Query Frame = 1


Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYH IR+S K EI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHSIRRSSKKEISKVPSLSDKWEIYGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

[Close]

BLAST of Csa6G364110.1 vs. Swiss-Prot
Match: RR14_TOBAC (30S ribosomal protein S14, chloroplastic OS=Nicotiana tabacum GN=rps14 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-19
Identity = 57/91 (62.64%), Postives = 57/91 (62.64%), Query Frame = 1


Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYH IR+S K EI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHSIRRSSKKEISKVPSLSDKWEIYGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

[Close]

BLAST of Csa6G364110.1 vs. TrEMBL
Match: A0A0A0KIM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G364110 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.8e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1


Query: 1  MEKAIDHLLIQREKRQKLEQKYHLIRQSLKNEIVDAPTRLHRCFLTGRPRANYQDLGFSG 60
          MEKAIDHLLIQREKRQKLEQKYHLIRQSLKNEIVDAPTRLHRCFLTGRPRANYQDLGFSG
Sbjct: 1  MEKAIDHLLIQREKRQKLEQKYHLIRQSLKNEIVDAPTRLHRCFLTGRPRANYQDLGFSG 60

Query: 61 HILREMVHACLLLGMTMKNIILLF 85
          HILREMVHACLLLGMTMKNIILLF
Sbjct: 61 HILREMVHACLLLGMTMKNIILLF 84

[Close]

BLAST of Csa6G364110.1 vs. TrEMBL
Match: W8E1Z5_9ROSI (Ribosomal protein S14 OS=Cucumis hystrix GN=rps14 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.2e-20
Identity = 61/91 (67.03%), Postives = 62/91 (68.13%), Query Frame = 1


Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYHLIRQSLKNEI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHLIRQSLKNEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

[Close]

BLAST of Csa6G364110.1 vs. TrEMBL
Match: H2BCB6_9CARY (30S ribosomal protein S14 (Fragment) OS=Didierea madagascariensis GN=rps14 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.0e-19
Identity = 59/91 (64.84%), Postives = 61/91 (67.03%), Query Frame = 1


Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYHLIR+S KNEI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHLIRRSSKNEISKVASLSDKWEIHGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

[Close]

BLAST of Csa6G364110.1 vs. TrEMBL
Match: H2BCB4_9CARY (30S ribosomal protein S14 (Fragment) OS=Anredera baselloides GN=rps14 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.0e-19
Identity = 59/91 (64.84%), Postives = 61/91 (67.03%), Query Frame = 1


Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYHLIR+S KNEI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHLIRRSSKNEISKVASLSDKWEIHGKLQSSPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

[Close]

BLAST of Csa6G364110.1 vs. TrEMBL
Match: H2BCC2_POROL (30S ribosomal protein S14 (Fragment) OS=Portulaca oleracea GN=rps14 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.0e-19
Identity = 59/91 (64.84%), Postives = 61/91 (67.03%), Query Frame = 1


Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYHLIR+S KNEI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHLIRRSSKNEISKVASLSDKWEIHGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

[Close]

BLAST of Csa6G364110.1 vs. TAIR10
Match: ATCG00330.1 (ATCG00330.1 chloroplast ribosomal protein S14)

HSP 1 Score: 90.5 bits (223), Expect = 5.4e-19
Identity = 51/91 (56.04%), Postives = 55/91 (60.44%), Query Frame = 1


Query: 8  LLIQREKRQKLEQKYHLIRQSLKNEIV---------------------DAPTRLHR-CFL 67
          L+ + +KRQKLE+KYHLIR+S K EI                       APTRLHR CF 
Sbjct: 6  LIYREKKRQKLEKKYHLIRRSSKKEISKIPSLSEKWKIHGKLQSPPRNSAPTRLHRRCFS 65

Query: 68 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMV ACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVQACLLPGAT 96

[Close]

BLAST of Csa6G364110.1 vs. NCBI nr
Match: gi|700192402|gb|KGN47606.1| (hypothetical protein Csa_6G364110 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 4.0e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1


Query: 1  MEKAIDHLLIQREKRQKLEQKYHLIRQSLKNEIVDAPTRLHRCFLTGRPRANYQDLGFSG 60
          MEKAIDHLLIQREKRQKLEQKYHLIRQSLKNEIVDAPTRLHRCFLTGRPRANYQDLGFSG
Sbjct: 1  MEKAIDHLLIQREKRQKLEQKYHLIRQSLKNEIVDAPTRLHRCFLTGRPRANYQDLGFSG 60

Query: 61 HILREMVHACLLLGMTMKNIILLF 85
          HILREMVHACLLLGMTMKNIILLF
Sbjct: 61 HILREMVHACLLLGMTMKNIILLF 84

[Close]

BLAST of Csa6G364110.1 vs. NCBI nr
Match: gi|68164801|ref|YP_247597.1| (ribosomal protein S14 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 6.0e-20
Identity = 61/91 (67.03%), Postives = 62/91 (68.13%), Query Frame = 1


Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYHLIRQSLKNEI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHLIRQSLKNEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

[Close]

BLAST of Csa6G364110.1 vs. NCBI nr
Match: gi|595645609|gb|AHM89066.1| (ribosomal protein S14 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 101.3 bits (251), Expect = 8.6e-19
Identity = 59/91 (64.84%), Postives = 61/91 (67.03%), Query Frame = 1


Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYHLIR+SLK EI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

[Close]

BLAST of Csa6G364110.1 vs. NCBI nr
Match: gi|372000855|gb|AEX65504.1| (30S ribosomal protein S14, partial (chloroplast) [Didierea madagascariensis])

HSP 1 Score: 101.3 bits (251), Expect = 8.6e-19
Identity = 59/91 (64.84%), Postives = 61/91 (67.03%), Query Frame = 1


Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYHLIR+S KNEI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHLIRRSSKNEISKVASLSDKWEIHGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

[Close]

BLAST of Csa6G364110.1 vs. NCBI nr
Match: gi|372000851|gb|AEX65502.1| (30S ribosomal protein S14, partial (chloroplast) [Anredera baselloides])

HSP 1 Score: 101.3 bits (251), Expect = 8.6e-19
Identity = 59/91 (64.84%), Postives = 61/91 (67.03%), Query Frame = 1


Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYHLIR+S KNEI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHLIRRSSKNEISKVASLSDKWEIHGKLQSSPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

The following BLAST results are available for this feature:

BLAST of Csa6G364110.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR14_CUCSA	3.7e-22	67.03	30S ribosomal protein S14, chloroplastic OS=Cucumis sativus GN=rps14 PE=3 SV=1	[more]
RR14_FAGEA	4.6e-20	62.64	30S ribosomal protein S14, chloroplastic OS=Fagopyrum esculentum subsp. ancestra...	[more]
RR14_SOLBU	1.3e-19	62.64	30S ribosomal protein S14, chloroplastic OS=Solanum bulbocastanum GN=rps14 PE=3 ...	[more]
RR14_NICTO	1.3e-19	62.64	30S ribosomal protein S14, chloroplastic OS=Nicotiana tomentosiformis GN=rps14 P...	[more]
RR14_TOBAC	1.3e-19	62.64	30S ribosomal protein S14, chloroplastic OS=Nicotiana tabacum GN=rps14 PE=3 SV=1	[more]

BLAST of Csa6G364110.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIM2_CUCSA	2.8e-40	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G364110 PE=4 SV=1	[more]
W8E1Z5_9ROSI	4.2e-20	67.03	Ribosomal protein S14 OS=Cucumis hystrix GN=rps14 PE=3 SV=1	[more]
H2BCB6_9CARY	6.0e-19	64.84	30S ribosomal protein S14 (Fragment) OS=Didierea madagascariensis GN=rps14 PE=3 ...	[more]
H2BCB4_9CARY	6.0e-19	64.84	30S ribosomal protein S14 (Fragment) OS=Anredera baselloides GN=rps14 PE=3 SV=1	[more]
H2BCC2_POROL	6.0e-19	64.84	30S ribosomal protein S14 (Fragment) OS=Portulaca oleracea GN=rps14 PE=3 SV=1	[more]

BLAST of Csa6G364110.1 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00330.1	5.4e-19	56.04	ATCG00330.1 chloroplast ribosomal protein S14	[more]

BLAST of Csa6G364110.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192402\|gb\|KGN47606.1\|	4.0e-40	100.00	hypothetical protein Csa_6G364110 [Cucumis sativus]	[more]
gi\|68164801\|ref\|YP_247597.1\|	6.0e-20	67.03	ribosomal protein S14 [Cucumis sativus]	[more]
gi\|595645609\|gb\|AHM89066.1\|	8.6e-19	64.84	ribosomal protein S14 (chloroplast) [Lagenaria siceraria]	[more]
gi\|372000855\|gb\|AEX65504.1\|	8.6e-19	64.84	30S ribosomal protein S14, partial (chloroplast) [Didierea madagascariensis]	[more]
gi\|372000851\|gb\|AEX65502.1\|	8.6e-19	64.84	30S ribosomal protein S14, partial (chloroplast) [Anredera baselloides]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001209	Ribosomal_S14
IPR018271	Ribosomal_S14_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G364110	Csa6G364110	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa6G364110.1	Csa6G364110.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G364110.1.cds3	Csa6G364110.1.cds3	CDS
Csa6G364110.1.cds2	Csa6G364110.1.cds2	CDS
Csa6G364110.1.cds1	Csa6G364110.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001209	Ribosomal protein S14	PANTHER	PTHR19836	30S RIBOSOMAL PROTEIN S14	coord: 1..76 score: 1.5
IPR001209	Ribosomal protein S14	PFAM	PF00253	Ribosomal_S14	coord: 38..76 score: 6.
IPR018271	Ribosomal protein S14, conserved site	PROSITE	PS00527	RIBOSOMAL_S14	coord: 42..64 scor
None	No IPR available	unknown	Coil	Coil	coord: 1..21 scor
None	No IPR available	GENE3D	G3DSA:4.10.830.10		coord: 36..76 score: 2.6
None	No IPR available	unknown	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 7..76 score: 2.21