Csa6G364110 (gene) Cucumber (Chinese Long) v2

NameCsa6G364110
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
Description30S ribosomal protein S14, chloroplastic; contains IPR001209 (Ribosomal protein S14)
LocationChr6 : 16469083 .. 16469601 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAAGGTAAGATCTATAGTTTTCTAATTTGGAGATTGTGGAGGAACTTATTGTAATTTTGAAGTATTTTGATAACGTGAACTACATCTCTTGTTTGTGAGTTTTAGTTTGGATACATTTAAATATTGATCGGCTTCCCATGCTTAGACCGCATAGTTTGATGGTTTAGGTTAACATATATAATACATGGCATATAGTTATAGGTTAGTCTCTAAGAAAAGCGATAGACCACCTTTTGATTCAAAGGGAGAAGAGGCAAAAATTGGAACAAAAATATCATTTGATTCGTCAATCCTTAAAAAACGAAATCGTTGAGTGAGAAATGGAAAATTCATGGAAAGTTACAATCCCCACCGCGTAATAGTGCACCCACACGTCTTCATCGATGTTTTTTAACCGGAAGACCGAGAGCAAACTATCAAGACCTTGGGTTCTCTGGACACATACTTCGTGAAATGGTTCATGCATGCTTGTTGCTTGGGATGACAATGAAGAATATTATTCTATTGTTCTAA

mRNA sequence

ATGGAAAAAGCGATAGACCACCTTTTGATTCAAAGGGAGAAGAGGCAAAAATTGGAACAAAAATATCATTTGATTCGTCAATCCTTAAAAAACGAAATCGTTGATGCACCCACACGTCTTCATCGATGTTTTTTAACCGGAAGACCGAGAGCAAACTATCAAGACCTTGGGTTCTCTGGACACATACTTCGTGAAATGGTTCATGCATGCTTGTTGCTTGGGATGACAATGAAGAATATTATTCTATTGTTCTAA

Coding sequence (CDS)

ATGGAAAAAGCGATAGACCACCTTTTGATTCAAAGGGAGAAGAGGCAAAAATTGGAACAAAAATATCATTTGATTCGTCAATCCTTAAAAAACGAAATCGTTGATGCACCCACACGTCTTCATCGATGTTTTTTAACCGGAAGACCGAGAGCAAACTATCAAGACCTTGGGTTCTCTGGACACATACTTCGTGAAATGGTTCATGCATGCTTGTTGCTTGGGATGACAATGAAGAATATTATTCTATTGTTCTAA

Protein sequence

MEKAIDHLLIQREKRQKLEQKYHLIRQSLKNEIVDAPTRLHRCFLTGRPRANYQDLGFSGHILREMVHACLLLGMTMKNIILLF*
BLAST of Csa6G364110 vs. Swiss-Prot
Match: RR14_CUCSA (30S ribosomal protein S14, chloroplastic OS=Cucumis sativus GN=rps14 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.7e-22
Identity = 61/91 (67.03%), Postives = 60/91 (65.93%), Query Frame = 1

Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYHLIRQSLKNEI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHLIRQSLKNEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

BLAST of Csa6G364110 vs. Swiss-Prot
Match: RR14_FAGEA (30S ribosomal protein S14, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rps14 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.6e-20
Identity = 57/91 (62.64%), Postives = 58/91 (63.74%), Query Frame = 1

Query: 9  LIQRE-KRQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQRE KR+KLEQKYHLIR+SLK EI                       APTRLH RCFL
Sbjct: 6  LIQREQKRKKLEQKYHLIRRSLKKEISKVTSLNEKWEIHGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVH CLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHTCLLPGAT 96

BLAST of Csa6G364110 vs. Swiss-Prot
Match: RR14_SOLBU (30S ribosomal protein S14, chloroplastic OS=Solanum bulbocastanum GN=rps14 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-19
Identity = 57/91 (62.64%), Postives = 57/91 (62.64%), Query Frame = 1

Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYH IR+S K EI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHSIRRSSKKEISKVPSLSDKWEIYGKLQSLPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

BLAST of Csa6G364110 vs. Swiss-Prot
Match: RR14_NICTO (30S ribosomal protein S14, chloroplastic OS=Nicotiana tomentosiformis GN=rps14 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-19
Identity = 57/91 (62.64%), Postives = 57/91 (62.64%), Query Frame = 1

Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYH IR+S K EI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHSIRRSSKKEISKVPSLSDKWEIYGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

BLAST of Csa6G364110 vs. Swiss-Prot
Match: RR14_TOBAC (30S ribosomal protein S14, chloroplastic OS=Nicotiana tabacum GN=rps14 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-19
Identity = 57/91 (62.64%), Postives = 57/91 (62.64%), Query Frame = 1

Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYH IR+S K EI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHSIRRSSKKEISKVPSLSDKWEIYGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

BLAST of Csa6G364110 vs. TrEMBL
Match: A0A0A0KIM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G364110 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.8e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1

Query: 1  MEKAIDHLLIQREKRQKLEQKYHLIRQSLKNEIVDAPTRLHRCFLTGRPRANYQDLGFSG 60
          MEKAIDHLLIQREKRQKLEQKYHLIRQSLKNEIVDAPTRLHRCFLTGRPRANYQDLGFSG
Sbjct: 1  MEKAIDHLLIQREKRQKLEQKYHLIRQSLKNEIVDAPTRLHRCFLTGRPRANYQDLGFSG 60

Query: 61 HILREMVHACLLLGMTMKNIILLF 85
          HILREMVHACLLLGMTMKNIILLF
Sbjct: 61 HILREMVHACLLLGMTMKNIILLF 84

BLAST of Csa6G364110 vs. TrEMBL
Match: W8E1Z5_9ROSI (Ribosomal protein S14 OS=Cucumis hystrix GN=rps14 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.2e-20
Identity = 61/91 (67.03%), Postives = 62/91 (68.13%), Query Frame = 1

Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYHLIRQSLKNEI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHLIRQSLKNEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

BLAST of Csa6G364110 vs. TrEMBL
Match: H2BCB6_9CARY (30S ribosomal protein S14 (Fragment) OS=Didierea madagascariensis GN=rps14 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.0e-19
Identity = 59/91 (64.84%), Postives = 61/91 (67.03%), Query Frame = 1

Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYHLIR+S KNEI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHLIRRSSKNEISKVASLSDKWEIHGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

BLAST of Csa6G364110 vs. TrEMBL
Match: H2BCB4_9CARY (30S ribosomal protein S14 (Fragment) OS=Anredera baselloides GN=rps14 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.0e-19
Identity = 59/91 (64.84%), Postives = 61/91 (67.03%), Query Frame = 1

Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYHLIR+S KNEI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHLIRRSSKNEISKVASLSDKWEIHGKLQSSPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

BLAST of Csa6G364110 vs. TrEMBL
Match: H2BCC2_POROL (30S ribosomal protein S14 (Fragment) OS=Portulaca oleracea GN=rps14 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.0e-19
Identity = 59/91 (64.84%), Postives = 61/91 (67.03%), Query Frame = 1

Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYHLIR+S KNEI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHLIRRSSKNEISKVASLSDKWEIHGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

BLAST of Csa6G364110 vs. TAIR10
Match: ATCG00330.1 (ATCG00330.1 chloroplast ribosomal protein S14)

HSP 1 Score: 90.5 bits (223), Expect = 5.4e-19
Identity = 51/91 (56.04%), Postives = 55/91 (60.44%), Query Frame = 1

Query: 8  LLIQREKRQKLEQKYHLIRQSLKNEIV---------------------DAPTRLHR-CFL 67
          L+ + +KRQKLE+KYHLIR+S K EI                       APTRLHR CF 
Sbjct: 6  LIYREKKRQKLEKKYHLIRRSSKKEISKIPSLSEKWKIHGKLQSPPRNSAPTRLHRRCFS 65

Query: 68 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMV ACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVQACLLPGAT 96

BLAST of Csa6G364110 vs. NCBI nr
Match: gi|700192402|gb|KGN47606.1| (hypothetical protein Csa_6G364110 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 4.0e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1

Query: 1  MEKAIDHLLIQREKRQKLEQKYHLIRQSLKNEIVDAPTRLHRCFLTGRPRANYQDLGFSG 60
          MEKAIDHLLIQREKRQKLEQKYHLIRQSLKNEIVDAPTRLHRCFLTGRPRANYQDLGFSG
Sbjct: 1  MEKAIDHLLIQREKRQKLEQKYHLIRQSLKNEIVDAPTRLHRCFLTGRPRANYQDLGFSG 60

Query: 61 HILREMVHACLLLGMTMKNIILLF 85
          HILREMVHACLLLGMTMKNIILLF
Sbjct: 61 HILREMVHACLLLGMTMKNIILLF 84

BLAST of Csa6G364110 vs. NCBI nr
Match: gi|68164801|ref|YP_247597.1| (ribosomal protein S14 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 6.0e-20
Identity = 61/91 (67.03%), Postives = 62/91 (68.13%), Query Frame = 1

Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYHLIRQSLKNEI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHLIRQSLKNEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

BLAST of Csa6G364110 vs. NCBI nr
Match: gi|595645609|gb|AHM89066.1| (ribosomal protein S14 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 101.3 bits (251), Expect = 8.6e-19
Identity = 59/91 (64.84%), Postives = 61/91 (67.03%), Query Frame = 1

Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYHLIR+SLK EI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

BLAST of Csa6G364110 vs. NCBI nr
Match: gi|372000855|gb|AEX65504.1| (30S ribosomal protein S14, partial (chloroplast) [Didierea madagascariensis])

HSP 1 Score: 101.3 bits (251), Expect = 8.6e-19
Identity = 59/91 (64.84%), Postives = 61/91 (67.03%), Query Frame = 1

Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYHLIR+S KNEI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHLIRRSSKNEISKVASLSDKWEIHGKLQSPPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

BLAST of Csa6G364110 vs. NCBI nr
Match: gi|372000851|gb|AEX65502.1| (30S ribosomal protein S14, partial (chloroplast) [Anredera baselloides])

HSP 1 Score: 101.3 bits (251), Expect = 8.6e-19
Identity = 59/91 (64.84%), Postives = 61/91 (67.03%), Query Frame = 1

Query: 9  LIQREK-RQKLEQKYHLIRQSLKNEIV---------------------DAPTRLH-RCFL 68
          LIQREK RQKLEQKYHLIR+S KNEI                       APTRLH RCFL
Sbjct: 6  LIQREKKRQKLEQKYHLIRRSSKNEISKVASLSDKWEIHGKLQSSPRNSAPTRLHRRCFL 65

Query: 69 TGRPRANYQDLGFSGHILREMVHACLLLGMT 77
          TGRPRANY+D G SGHILREMVHACLL G T
Sbjct: 66 TGRPRANYRDFGLSGHILREMVHACLLPGAT 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RR14_CUCSA3.7e-2267.0330S ribosomal protein S14, chloroplastic OS=Cucumis sativus GN=rps14 PE=3 SV=1[more]
RR14_FAGEA4.6e-2062.6430S ribosomal protein S14, chloroplastic OS=Fagopyrum esculentum subsp. ancestra... [more]
RR14_SOLBU1.3e-1962.6430S ribosomal protein S14, chloroplastic OS=Solanum bulbocastanum GN=rps14 PE=3 ... [more]
RR14_NICTO1.3e-1962.6430S ribosomal protein S14, chloroplastic OS=Nicotiana tomentosiformis GN=rps14 P... [more]
RR14_TOBAC1.3e-1962.6430S ribosomal protein S14, chloroplastic OS=Nicotiana tabacum GN=rps14 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KIM2_CUCSA2.8e-40100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G364110 PE=4 SV=1[more]
W8E1Z5_9ROSI4.2e-2067.03Ribosomal protein S14 OS=Cucumis hystrix GN=rps14 PE=3 SV=1[more]
H2BCB6_9CARY6.0e-1964.8430S ribosomal protein S14 (Fragment) OS=Didierea madagascariensis GN=rps14 PE=3 ... [more]
H2BCB4_9CARY6.0e-1964.8430S ribosomal protein S14 (Fragment) OS=Anredera baselloides GN=rps14 PE=3 SV=1[more]
H2BCC2_POROL6.0e-1964.8430S ribosomal protein S14 (Fragment) OS=Portulaca oleracea GN=rps14 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATCG00330.15.4e-1956.04ATCG00330.1 chloroplast ribosomal protein S14[more]
Match NameE-valueIdentityDescription
gi|700192402|gb|KGN47606.1|4.0e-40100.00hypothetical protein Csa_6G364110 [Cucumis sativus][more]
gi|68164801|ref|YP_247597.1|6.0e-2067.03ribosomal protein S14 [Cucumis sativus][more]
gi|595645609|gb|AHM89066.1|8.6e-1964.84ribosomal protein S14 (chloroplast) [Lagenaria siceraria][more]
gi|372000855|gb|AEX65504.1|8.6e-1964.8430S ribosomal protein S14, partial (chloroplast) [Didierea madagascariensis][more]
gi|372000851|gb|AEX65502.1|8.6e-1964.8430S ribosomal protein S14, partial (chloroplast) [Anredera baselloides][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001209Ribosomal_S14
IPR018271Ribosomal_S14_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU172796cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G364110.1Csa6G364110.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU172796CU172796transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001209Ribosomal protein S14PANTHERPTHR1983630S RIBOSOMAL PROTEIN S14coord: 1..76
score: 1.5
IPR001209Ribosomal protein S14PFAMPF00253Ribosomal_S14coord: 38..76
score: 6.
IPR018271Ribosomal protein S14, conserved sitePROSITEPS00527RIBOSOMAL_S14coord: 42..64
scor
NoneNo IPR availableunknownCoilCoilcoord: 1..21
scor
NoneNo IPR availableGENE3DG3DSA:4.10.830.10coord: 36..76
score: 2.6
NoneNo IPR availableunknownSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 7..76
score: 2.21

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None