Csa6G147550.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G147550.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 10212654 .. 10212890 (+)
Sequence length	237

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGAAGATCAGAAGAATGCGAGTTTTTAGGCAAAAATCTAAGAAACAGAGGCATTCCGATGATTTAAGATTTGGGTTCGAGAATGGAAGTGAGAATATGGGGTCGAGTATGGAAATGAAAGACGAAGGATTGGAATCGAAGGGTACCGGAGTTAAGACTGTGGAAATGATTTACGTGAGTGGTCTGGGTAAGGAATTGGATCGACGATTGGGTGTTTTGAGGAGGTTTTGA

mRNA sequence

ATGGGTTTGAAGATCAGAAGAATGCGAGTTTTTAGGCAAAAATCTAAGAAACAGAGGCATTCCGATGATTTAAGATTTGGGTTCGAGAATGGAAGTGAGAATATGGGGTCGAGTATGGAAATGAAAGACGAAGGATTGGAATCGAAGGGTACCGGAGTTAAGACTGTGGAAATGATTTACGTGAGTGGTCTGGGTAAGGAATTGGATCGACGATTGGGTGTTTTGAGGAGGTTTTGA

Coding sequence (CDS)

ATGGGTTTGAAGATCAGAAGAATGCGAGTTTTTAGGCAAAAATCTAAGAAACAGAGGCATTCCGATGATTTAAGATTTGGGTTCGAGAATGGAAGTGAGAATATGGGGTCGAGTATGGAAATGAAAGACGAAGGATTGGAATCGAAGGGTACCGGAGTTAAGACTGTGGAAATGATTTACGTGAGTGGTCTGGGTAAGGAATTGGATCGACGATTGGGTGTTTTGAGGAGGTTTTGA

Protein sequence

MGLKIRRMRVFRQKSKKQRHSDDLRFGFENGSENMGSSMEMKDEGLESKGTGVKTVEMIYVSGLGKELDRRLGVLRRF*

Homology

[Close]

BLAST of Csa6G147550.1 vs. TrEMBL
Match: A0A0A0KEM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G147550 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.5e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MGLKIRRMRVFRQKSKKQRHSDDLRFGFENGSENMGSSMEMKDEGLESKGTGVKTVEMIY 60
          MGLKIRRMRVFRQKSKKQRHSDDLRFGFENGSENMGSSMEMKDEGLESKGTGVKTVEMIY
Sbjct: 1  MGLKIRRMRVFRQKSKKQRHSDDLRFGFENGSENMGSSMEMKDEGLESKGTGVKTVEMIY 60

Query: 61 VSGLGKELDRRLGVLRRF 79
          VSGLGKELDRRLGVLRRF
Sbjct: 61 VSGLGKELDRRLGVLRRF 78

[Close]

BLAST of Csa6G147550.1 vs. NCBI nr
Match: gi|700191658|gb|KGN46862.1| (hypothetical protein Csa_6G147550 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MGLKIRRMRVFRQKSKKQRHSDDLRFGFENGSENMGSSMEMKDEGLESKGTGVKTVEMIY 60
          MGLKIRRMRVFRQKSKKQRHSDDLRFGFENGSENMGSSMEMKDEGLESKGTGVKTVEMIY
Sbjct: 1  MGLKIRRMRVFRQKSKKQRHSDDLRFGFENGSENMGSSMEMKDEGLESKGTGVKTVEMIY 60

Query: 61 VSGLGKELDRRLGVLRRF 79
          VSGLGKELDRRLGVLRRF
Sbjct: 61 VSGLGKELDRRLGVLRRF 78

The following BLAST results are available for this feature:

BLAST of Csa6G147550.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEM4_CUCSA	1.5e-35	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G147550 PE=4 SV=1	[more]

BLAST of Csa6G147550.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191658\|gb\|KGN46862.1\|	2.1e-35	100.00	hypothetical protein Csa_6G147550 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G147550	Csa6G147550	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa6G147550.1	Csa6G147550.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G147550.1.cds1	Csa6G147550.1.cds1	CDS