Csa6G124050.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G124050.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 8527834 .. 8530745 (+)
Sequence length	291

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACCTTAGCGGCTGCTGCAGTTCGTCATGCCAGAGCCCTAGCTCGAGTTTCCTCGCCTCAGTCAACCGCCAACCTTATTCACAAGCGCGGTCTCGCTGGCGCTGCCGGTAGGTTTCATCTCCCGATCTCATTTTTATAAATTTAGGTCATATGCTTGGACTTGTTTCATTTTCGGGTTTGTTCAATCTTTTTTGGTTTCTAAATTTTAATGTGGGAATCATGGTTATATATTGTTTCCCCAAGTCCTGTTTTTAGATTTGGCTCTTTATTATTTTCACGGCATGCGATCTTGAAAAGGTGCGAATTTGTTTAGTTTTTGTAATGCATTTTACGTTATTAGACAACCCAGATTTTTTGTGGGGATATTTCACTATTATTCTTAGATAAAGAAGATTGTGGTCTTGTTTCTATAATCGAAATGGAAATGAAGCAAACTGAGCTCTGGTAATTTTACCTCAATTTGGCAACGGAATTCGAAGATATGGGAGTTTGGAACTTGTACTTTTCTGGCATATTGTTACCTTATCAATTGTTTCAACTGGGAACTGTTGCTATAGCCTCAATGGTGATATTTAAATAAGGAACCATTGGTAAATTGAAACACAATGAAGACTTATGAATAACAATCACAATGAAAATGCAGGCATTGCATTATTACTTGCACTCCACCACTTCGTTGAGTGTGGATTAAGATCGTTTTTATGTTTTAAAAACATTGTAATTTGCATGGGGGTCTTCTTAGCTGAACTCATTTCCCTAGTGGGGTTTTGATGGACTTGTCTATACACCGGTATTCTTTCATTTTCTTTGCAATGAAAGCAGTTGTTACTATCAAAATAAATTTGCTTAGCTAATCTGAACGTTATATGTCAACACCACACATGAATACACCTGTCATGTAGTAAAGATGTTTGACTGAATGGAACATTGAAGATCACCTTTGTACAGTACAAGACAGTCAGGTGATGATTAGTAAAATTATTCATGCTGTGTTATTTAGTTTTCTTTAAATTTCAACTTTGAGAGTTACAAGACTACACTCTACTCATGGATTTGAATTCTGCATGTTTCTTTTGTAATGTTTGTTGTGGGAGAATGTAACATCAAAAGATGAATAAATAACCTTTATTTCTTTTAACTTTGACCTTCTTTGTTGATACTTGCAGACCATCATGGACCCCCGAAGGTTAACTGTTGGCAAGATCCCATGAGCCCATCTAAGTGGAAGGAAGAGCACGTAAGACTTACTTTTTTAAAATGAGGCTACTGGTTTCATTTCTTCCTTCTTTCACTTTTCATTCTTTCTATTTTTTGTTCTTCCTATTTGCTCGCATCAAGTATGAGGATTTAAGAATAAGAAGTCAGAAGTTAACCTCTTTAGATTCTATCAGAATCTCTTAAATTTGTAATCAACTCAACAAAGTACTTGATTTTGTTTCGTAAGAGTTCTTTTTGTACTACATATTTAATGTAGTTTCTTCACTATCAGTCACTTATAGTGTTGTATTAGATTAGTTCTATTGAACCACCAATTCATCCAAAAAACTTAAGCTTGTGGTTGAAGGCAAATTTAAAGATATATCACCAACACTTCCCCTCACTTGTGGACTTGAAATATTTGAAAGGCCCAACAAGTGGAAATCAATTTTAATTGGAGAGGAAACAACAATGCAGGGCTTGAAATAGTACCCCTCTGGACCACCTACTTTGATACCATATTGAACCACCAATTTACCCAAAAGCTTAAGCTTGTGGTTAAAGGCACCAACAAGATCTATTAATTTAACTATGGTTTGGAATTTCTGGGTTCAGCTTAGAGTTAATGCAGCTATTTGTCTCACTGTATTACTTGTTCTCTTTGCTTTCAACAGACTTTAAAGTTGAAAATTCTTCTACCTTAAATTAGTTAGTTTTGGTTTGACACTTGTGAGTCATATAATGCCCTCTTCTCTCAAGTGTTCTTGTCTTGGAGAATAAATAATCAATAAGCAATGGCCTAATTATCGTTCTTGTGCCGTCTTTAATATCTAGCCGTCTCTTGTTGTCTCTTTCAAACAATATTTACCATGAACTAATTGAACTTGTTCTGAATTTTGCAGTTCGTGCTTGTCTCTCTATCAGGATGGGCACTGCTCATCTCTGGAGGGTACAAGTTCTTCACCAGGGGAAAAGGAAAGGATGAGGTACTTCTGCACTTTATTTTCTATGCGCCTTTTACAGTTAAAACCACTTGCAGTTATTTACAGGTGACTAAATGTAATGGCAGTTATGGGTCAGTTTTGAGCTGTTTACAAGATTAACTTCTGTGAACAATTTGTTTATACCTTTTATTTTTGAGGAGGGAATGGCATCTTAAAAGTTTAGCTTTGTGATTTCCTTGGTATTTACTTTTATTTTAAGTTCATACATTTGGCAAGTTCTACATCAGCCTGTAATGTGAAATGAAAATAGGGAAATGTTGATCTGTCCTGCAATATTCTGGAGTACTACTAATACATGAAAACATAATACGAGGGTTAGAATTTAGGTTCAGAGAAAATATATTATAGTATTTTGAGGCTTCTTTGGTTGCTTTCTTGGCAAGCCCGTGATATTATGAGGTGAACCGAGGAGTAGTACGATTATGACCTTGGGGCTCAGATGGAGAATGAAAAACATTTACCTGATTTGTCTTTTTTGAATAACATTTCATGGTTTTATTGTCTGCTTTTGTAAGTCTAGTTTTATGGATCATTTGGATCACAATTATACAGGGAGTATTTGAAACTCATAACTGGATGTAGCTGTCTGAGTGTACTGCCTAGATCTATCCTAAACGAACATGCACATGTATTTTTTCACAGCGAGTTTGTTCTCTCCTAACTTATTGCACTTTGTTTGCAGAAACTTGCGGAAGCATCCCAATGA

mRNA sequence

ATGGCTACCTTAGCGGCTGCTGCAGTTCGTCATGCCAGAGCCCTAGCTCGAGTTTCCTCGCCTCAGTCAACCGCCAACCTTATTCACAAGCGCGGTCTCGCTGGCGCTGCCGACCATCATGGACCCCCGAAGGTTAACTGTTGGCAAGATCCCATGAGCCCATCTAAGTGGAAGGAAGAGCACTTCGTGCTTGTCTCTCTATCAGGATGGGCACTGCTCATCTCTGGAGGGTACAAGTTCTTCACCAGGGGAAAAGGAAAGGATGAGAAACTTGCGGAAGCATCCCAATGA

Coding sequence (CDS)

ATGGCTACCTTAGCGGCTGCTGCAGTTCGTCATGCCAGAGCCCTAGCTCGAGTTTCCTCGCCTCAGTCAACCGCCAACCTTATTCACAAGCGCGGTCTCGCTGGCGCTGCCGACCATCATGGACCCCCGAAGGTTAACTGTTGGCAAGATCCCATGAGCCCATCTAAGTGGAAGGAAGAGCACTTCGTGCTTGTCTCTCTATCAGGATGGGCACTGCTCATCTCTGGAGGGTACAAGTTCTTCACCAGGGGAAAAGGAAAGGATGAGAAACTTGCGGAAGCATCCCAATGA

Protein sequence

MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEEHFVLVSLSGWALLISGGYKFFTRGKGKDEKLAEASQ*

Homology

[Close]

BLAST of Csa6G124050.1 vs. TrEMBL
Match: A0A0A0KAD9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124050 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 2.4e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1  MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60
          MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE
Sbjct: 1  MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61 HFVLVSLSGWALLISGGYKFFTRGKGKDEKLAEASQ 97
          HFVLVSLSGWALLISGGYKFFTRGKGKDEKLAEASQ
Sbjct: 61 HFVLVSLSGWALLISGGYKFFTRGKGKDEKLAEASQ 96

[Close]

BLAST of Csa6G124050.1 vs. TrEMBL
Match: A9P8A4_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.7e-33
Identity = 73/99 (73.74%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 1  MATLAAAAVRHARALARVSSPQSTAN---LIHKRGLAGAADHHGPPKVNCWQDPMSPSKW 60
          MATLAAAA R A  L+RVSSP++ A    LIH+RGLAGAADHHGPP++NCWQDPMSPSKW
Sbjct: 1  MATLAAAAARQAVTLSRVSSPKTPAQAAALIHRRGLAGAADHHGPPRINCWQDPMSPSKW 60

Query: 61 KEEHFVLVSLSGWALLISGGYKFFTRGK-GKDEKLAEAS 96
          KEEHFV+VSLSGW +LI GGYKFFT GK  K+EK  EA+
Sbjct: 61 KEEHFVIVSLSGWGVLIYGGYKFFTGGKSNKEEKPLEAA 99

[Close]

BLAST of Csa6G124050.1 vs. TrEMBL
Match: A0A061EAM4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_007961 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.7e-33
Identity = 73/97 (75.26%), Postives = 79/97 (81.44%), Query Frame = 1


Query: 1  MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60
          MATLAA A R A  LAR  +P   A+LI +RGLAGAADHHGPPKVN WQDPMSPSKWKEE
Sbjct: 1  MATLAAIAARRAATLARTPAPSQAASLIPRRGLAGAADHHGPPKVNFWQDPMSPSKWKEE 60

Query: 61 HFVLVSLSGWALLISGGYKFFTRGKG-KDEKLAEASQ 97
          HFV+VSLSGW LLI  GYKFFT GKG K+E LAEA+Q
Sbjct: 61 HFVIVSLSGWGLLIFSGYKFFTGGKGKKEENLAEAAQ 97

[Close]

BLAST of Csa6G124050.1 vs. TrEMBL
Match: A9P9R5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s13590g PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.9e-33
Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 1  MATLAAAAVRHARALARVSSPQSTAN---LIHKRGLAGAADHHGPPKVNCWQDPMSPSKW 60
          MATLAAAA R A  L+R+SSP++ A    LIH+RGLAGAADHHGPP++NCWQDPMSPSKW
Sbjct: 1  MATLAAAAARQAVTLSRISSPKTPAQAAALIHRRGLAGAADHHGPPRINCWQDPMSPSKW 60

Query: 61 KEEHFVLVSLSGWALLISGGYKFFTRGK-GKDEKLAEAS 96
          KEEHFV+VSLSGW +LI GGYKFFT GK  K+EK  EA+
Sbjct: 61 KEEHFVIVSLSGWGVLIYGGYKFFTGGKSNKEEKPLEAA 99

[Close]

BLAST of Csa6G124050.1 vs. TrEMBL
Match: A0A061E2R8_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_007961 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.9e-32
Identity = 72/95 (75.79%), Postives = 77/95 (81.05%), Query Frame = 1


Query: 1  MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60
          MATLAA A R A  LAR  +P   A+LI +RGLAGAADHHGPPKVN WQDPMSPSKWKEE
Sbjct: 1  MATLAAIAARRAATLARTPAPSQAASLIPRRGLAGAADHHGPPKVNFWQDPMSPSKWKEE 60

Query: 61 HFVLVSLSGWALLISGGYKFFTRGKG-KDEKLAEA 95
          HFV+VSLSGW LLI  GYKFFT GKG K+E LAEA
Sbjct: 61 HFVIVSLSGWGLLIFSGYKFFTGGKGKKEENLAEA 95

[Close]

BLAST of Csa6G124050.1 vs. TAIR10
Match: AT2G20820.2 (AT2G20820.2 unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-09
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1


Query: 6  AAAVRHARALARVSSPQ---STANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEEHF 64
          A+  R A +LA++ S +     A++  +R LAGAADHHG  KV+ W+ P +P  WKEEH+
Sbjct: 2  ASFARRAMSLAQIPSARISSGAASIGQRRCLAGAADHHGSTKVDFWKQPTNPGNWKEEHW 61

[Close]

BLAST of Csa6G124050.1 vs. NCBI nr
Match: gi|700191486|gb|KGN46690.1| (hypothetical protein Csa_6G124050 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 3.5e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1  MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60
          MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE
Sbjct: 1  MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61 HFVLVSLSGWALLISGGYKFFTRGKGKDEKLAEASQ 97
          HFVLVSLSGWALLISGGYKFFTRGKGKDEKLAEASQ
Sbjct: 61 HFVLVSLSGWALLISGGYKFFTRGKGKDEKLAEASQ 96

[Close]

BLAST of Csa6G124050.1 vs. NCBI nr
Match: gi|659094714|ref|XP_008448206.1| (PREDICTED: uncharacterized protein LOC103490467 [Cucumis melo])

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43
Identity = 90/97 (92.78%), Postives = 92/97 (94.85%), Query Frame = 1


Query: 1  MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60
          MATLAAAAVR ARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE
Sbjct: 1  MATLAAAAVRQARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61 HFVLVSLSGWALLISGGYKFFTRGKG-KDEKLAEASQ 97
          HFVLVSLSGW +LI GGYKFFTRGKG KDEK+ EASQ
Sbjct: 61 HFVLVSLSGWGVLIFGGYKFFTRGKGNKDEKIVEASQ 97

[Close]

BLAST of Csa6G124050.1 vs. NCBI nr
Match: gi|590690397|ref|XP_007043497.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 148.7 bits (374), Expect = 5.4e-33
Identity = 73/97 (75.26%), Postives = 79/97 (81.44%), Query Frame = 1


Query: 1  MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60
          MATLAA A R A  LAR  +P   A+LI +RGLAGAADHHGPPKVN WQDPMSPSKWKEE
Sbjct: 1  MATLAAIAARRAATLARTPAPSQAASLIPRRGLAGAADHHGPPKVNFWQDPMSPSKWKEE 60

Query: 61 HFVLVSLSGWALLISGGYKFFTRGKG-KDEKLAEASQ 97
          HFV+VSLSGW LLI  GYKFFT GKG K+E LAEA+Q
Sbjct: 61 HFVIVSLSGWGLLIFSGYKFFTGGKGKKEENLAEAAQ 97

[Close]

BLAST of Csa6G124050.1 vs. NCBI nr
Match: gi|118481328|gb|ABK92607.1| (unknown [Populus trichocarpa])

HSP 1 Score: 148.7 bits (374), Expect = 5.4e-33
Identity = 73/99 (73.74%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 1  MATLAAAAVRHARALARVSSPQSTAN---LIHKRGLAGAADHHGPPKVNCWQDPMSPSKW 60
          MATLAAAA R A  L+RVSSP++ A    LIH+RGLAGAADHHGPP++NCWQDPMSPSKW
Sbjct: 1  MATLAAAAARQAVTLSRVSSPKTPAQAAALIHRRGLAGAADHHGPPRINCWQDPMSPSKW 60

Query: 61 KEEHFVLVSLSGWALLISGGYKFFTRGK-GKDEKLAEAS 96
          KEEHFV+VSLSGW +LI GGYKFFT GK  K+EK  EA+
Sbjct: 61 KEEHFVIVSLSGWGVLIYGGYKFFTGGKSNKEEKPLEAA 99

[Close]

BLAST of Csa6G124050.1 vs. NCBI nr
Match: gi|566243979|ref|XP_006371606.1| (hypothetical protein POPTR_0019s13590g [Populus trichocarpa])

HSP 1 Score: 148.3 bits (373), Expect = 7.0e-33
Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 1  MATLAAAAVRHARALARVSSPQSTAN---LIHKRGLAGAADHHGPPKVNCWQDPMSPSKW 60
          MATLAAAA R A  L+R+SSP++ A    LIH+RGLAGAADHHGPP++NCWQDPMSPSKW
Sbjct: 1  MATLAAAAARQAVTLSRISSPKTPAQAAALIHRRGLAGAADHHGPPRINCWQDPMSPSKW 60

Query: 61 KEEHFVLVSLSGWALLISGGYKFFTRGK-GKDEKLAEAS 96
          KEEHFV+VSLSGW +LI GGYKFFT GK  K+EK  EA+
Sbjct: 61 KEEHFVIVSLSGWGVLIYGGYKFFTGGKSNKEEKPLEAA 99

The following BLAST results are available for this feature:

BLAST of Csa6G124050.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAD9_CUCSA	2.4e-48	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124050 PE=4 SV=1	[more]
A9P8A4_POPTR	3.7e-33	73.74	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]
A0A061EAM4_THECC	3.7e-33	75.26	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_007961 PE=4 SV=1	[more]
A9P9R5_POPTR	4.9e-33	72.73	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s13590g PE=2 SV=1	[more]
A0A061E2R8_THECC	1.9e-32	75.79	Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_007961 PE=4 SV=1	[more]

BLAST of Csa6G124050.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20820.2	2.6e-09	44.26	unknown protein	[more]

BLAST of Csa6G124050.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191486\|gb\|KGN46690.1\|	3.5e-48	100.00	hypothetical protein Csa_6G124050 [Cucumis sativus]	[more]
gi\|659094714\|ref\|XP_008448206.1\|	1.2e-43	92.78	PREDICTED: uncharacterized protein LOC103490467 [Cucumis melo]	[more]
gi\|590690397\|ref\|XP_007043497.1\|	5.4e-33	75.26	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]
gi\|118481328\|gb\|ABK92607.1\|	5.4e-33	73.74	unknown [Populus trichocarpa]	[more]
gi\|566243979\|ref\|XP_006371606.1\|	7.0e-33	72.73	hypothetical protein POPTR_0019s13590g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009853	photorespiration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G124050	Csa6G124050	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa6G124050.1	Csa6G124050.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G124050.1.cds1	Csa6G124050.1.cds1	CDS
Csa6G124050.1.cds2	Csa6G124050.1.cds2	CDS
Csa6G124050.1.cds3	Csa6G124050.1.cds3	CDS
Csa6G124050.1.cds4	Csa6G124050.1.cds4	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35292	FAMILY NOT NAMED	coord: 1..89 score: 8.6
None	No IPR available	PANTHER	PTHR35292:SF1	SUBFAMILY NOT NAMED	coord: 1..89 score: 8.6