Csa6G124050 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G124050
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 8527834 .. 8530745 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACCTTAGCGGCTGCTGCAGTTCGTCATGCCAGAGCCCTAGCTCGAGTTTCCTCGCCTCAGTCAACCGCCAACCTTATTCACAAGCGCGGTCTCGCTGGCGCTGCCGGTAGGTTTCATCTCCCGATCTCATTTTTATAAATTTAGGTCATATGCTTGGACTTGTTTCATTTTCGGGTTTGTTCAATCTTTTTTGGTTTCTAAATTTTAATGTGGGAATCATGGTTATATATTGTTTCCCCAAGTCCTGTTTTTAGATTTGGCTCTTTATTATTTTCACGGCATGCGATCTTGAAAAGGTGCGAATTTGTTTAGTTTTTGTAATGCATTTTACGTTATTAGACAACCCAGATTTTTTGTGGGGATATTTCACTATTATTCTTAGATAAAGAAGATTGTGGTCTTGTTTCTATAATCGAAATGGAAATGAAGCAAACTGAGCTCTGGTAATTTTACCTCAATTTGGCAACGGAATTCGAAGATATGGGAGTTTGGAACTTGTACTTTTCTGGCATATTGTTACCTTATCAATTGTTTCAACTGGGAACTGTTGCTATAGCCTCAATGGTGATATTTAAATAAGGAACCATTGGTAAATTGAAACACAATGAAGACTTATGAATAACAATCACAATGAAAATGCAGGCATTGCATTATTACTTGCACTCCACCACTTCGTTGAGTGTGGATTAAGATCGTTTTTATGTTTTAAAAACATTGTAATTTGCATGGGGGTCTTCTTAGCTGAACTCATTTCCCTAGTGGGGTTTTGATGGACTTGTCTATACACCGGTATTCTTTCATTTTCTTTGCAATGAAAGCAGTTGTTACTATCAAAATAAATTTGCTTAGCTAATCTGAACGTTATATGTCAACACCACACATGAATACACCTGTCATGTAGTAAAGATGTTTGACTGAATGGAACATTGAAGATCACCTTTGTACAGTACAAGACAGTCAGGTGATGATTAGTAAAATTATTCATGCTGTGTTATTTAGTTTTCTTTAAATTTCAACTTTGAGAGTTACAAGACTACACTCTACTCATGGATTTGAATTCTGCATGTTTCTTTTGTAATGTTTGTTGTGGGAGAATGTAACATCAAAAGATGAATAAATAACCTTTATTTCTTTTAACTTTGACCTTCTTTGTTGATACTTGCAGACCATCATGGACCCCCGAAGGTTAACTGTTGGCAAGATCCCATGAGCCCATCTAAGTGGAAGGAAGAGCACGTAAGACTTACTTTTTTAAAATGAGGCTACTGGTTTCATTTCTTCCTTCTTTCACTTTTCATTCTTTCTATTTTTTGTTCTTCCTATTTGCTCGCATCAAGTATGAGGATTTAAGAATAAGAAGTCAGAAGTTAACCTCTTTAGATTCTATCAGAATCTCTTAAATTTGTAATCAACTCAACAAAGTACTTGATTTTGTTTCGTAAGAGTTCTTTTTGTACTACATATTTAATGTAGTTTCTTCACTATCAGTCACTTATAGTGTTGTATTAGATTAGTTCTATTGAACCACCAATTCATCCAAAAAACTTAAGCTTGTGGTTGAAGGCAAATTTAAAGATATATCACCAACACTTCCCCTCACTTGTGGACTTGAAATATTTGAAAGGCCCAACAAGTGGAAATCAATTTTAATTGGAGAGGAAACAACAATGCAGGGCTTGAAATAGTACCCCTCTGGACCACCTACTTTGATACCATATTGAACCACCAATTTACCCAAAAGCTTAAGCTTGTGGTTAAAGGCACCAACAAGATCTATTAATTTAACTATGGTTTGGAATTTCTGGGTTCAGCTTAGAGTTAATGCAGCTATTTGTCTCACTGTATTACTTGTTCTCTTTGCTTTCAACAGACTTTAAAGTTGAAAATTCTTCTACCTTAAATTAGTTAGTTTTGGTTTGACACTTGTGAGTCATATAATGCCCTCTTCTCTCAAGTGTTCTTGTCTTGGAGAATAAATAATCAATAAGCAATGGCCTAATTATCGTTCTTGTGCCGTCTTTAATATCTAGCCGTCTCTTGTTGTCTCTTTCAAACAATATTTACCATGAACTAATTGAACTTGTTCTGAATTTTGCAGTTCGTGCTTGTCTCTCTATCAGGATGGGCACTGCTCATCTCTGGAGGGTACAAGTTCTTCACCAGGGGAAAAGGAAAGGATGAGGTACTTCTGCACTTTATTTTCTATGCGCCTTTTACAGTTAAAACCACTTGCAGTTATTTACAGGTGACTAAATGTAATGGCAGTTATGGGTCAGTTTTGAGCTGTTTACAAGATTAACTTCTGTGAACAATTTGTTTATACCTTTTATTTTTGAGGAGGGAATGGCATCTTAAAAGTTTAGCTTTGTGATTTCCTTGGTATTTACTTTTATTTTAAGTTCATACATTTGGCAAGTTCTACATCAGCCTGTAATGTGAAATGAAAATAGGGAAATGTTGATCTGTCCTGCAATATTCTGGAGTACTACTAATACATGAAAACATAATACGAGGGTTAGAATTTAGGTTCAGAGAAAATATATTATAGTATTTTGAGGCTTCTTTGGTTGCTTTCTTGGCAAGCCCGTGATATTATGAGGTGAACCGAGGAGTAGTACGATTATGACCTTGGGGCTCAGATGGAGAATGAAAAACATTTACCTGATTTGTCTTTTTTGAATAACATTTCATGGTTTTATTGTCTGCTTTTGTAAGTCTAGTTTTATGGATCATTTGGATCACAATTATACAGGGAGTATTTGAAACTCATAACTGGATGTAGCTGTCTGAGTGTACTGCCTAGATCTATCCTAAACGAACATGCACATGTATTTTTTCACAGCGAGTTTGTTCTCTCCTAACTTATTGCACTTTGTTTGCAGAAACTTGCGGAAGCATCCCAATGA

mRNA sequence

ATGGCTACCTTAGCGGCTGCTGCAGTTCGTCATGCCAGAGCCCTAGCTCGAGTTTCCTCGCCTCAGTCAACCGCCAACCTTATTCACAAGCGCGGTCTCGCTGGCGCTGCCGACCATCATGGACCCCCGAAGGTTAACTGTTGGCAAGATCCCATGAGCCCATCTAAGTGGAAGGAAGAGCACTTCGTGCTTGTCTCTCTATCAGGATGGGCACTGCTCATCTCTGGAGGGTACAAGTTCTTCACCAGGGGAAAAGGAAAGGATGAGAAACTTGCGGAAGCATCCCAATGA

Coding sequence (CDS)

ATGGCTACCTTAGCGGCTGCTGCAGTTCGTCATGCCAGAGCCCTAGCTCGAGTTTCCTCGCCTCAGTCAACCGCCAACCTTATTCACAAGCGCGGTCTCGCTGGCGCTGCCGACCATCATGGACCCCCGAAGGTTAACTGTTGGCAAGATCCCATGAGCCCATCTAAGTGGAAGGAAGAGCACTTCGTGCTTGTCTCTCTATCAGGATGGGCACTGCTCATCTCTGGAGGGTACAAGTTCTTCACCAGGGGAAAAGGAAAGGATGAGAAACTTGCGGAAGCATCCCAATGA

Protein sequence

MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEEHFVLVSLSGWALLISGGYKFFTRGKGKDEKLAEASQ*
Homology
[Close]
BLAST of Csa6G124050 vs. TrEMBL
Match: A0A0A0KAD9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124050 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 2.4e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60
          MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE
Sbjct: 1  MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61 HFVLVSLSGWALLISGGYKFFTRGKGKDEKLAEASQ 97
          HFVLVSLSGWALLISGGYKFFTRGKGKDEKLAEASQ
Sbjct: 61 HFVLVSLSGWALLISGGYKFFTRGKGKDEKLAEASQ 96

[Close]
BLAST of Csa6G124050 vs. TrEMBL
Match: A9P8A4_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.7e-33
Identity = 73/99 (73.74%), Postives = 83/99 (83.84%), Query Frame = 1 

Query: 1  MATLAAAAVRHARALARVSSPQSTAN---LIHKRGLAGAADHHGPPKVNCWQDPMSPSKW 60
          MATLAAAA R A  L+RVSSP++ A    LIH+RGLAGAADHHGPP++NCWQDPMSPSKW
Sbjct: 1  MATLAAAAARQAVTLSRVSSPKTPAQAAALIHRRGLAGAADHHGPPRINCWQDPMSPSKW 60

Query: 61 KEEHFVLVSLSGWALLISGGYKFFTRGK-GKDEKLAEAS 96
          KEEHFV+VSLSGW +LI GGYKFFT GK  K+EK  EA+
Sbjct: 61 KEEHFVIVSLSGWGVLIYGGYKFFTGGKSNKEEKPLEAA 99

[Close]
BLAST of Csa6G124050 vs. TrEMBL
Match: A0A061EAM4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_007961 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.7e-33
Identity = 73/97 (75.26%), Postives = 79/97 (81.44%), Query Frame = 1 

Query: 1  MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60
          MATLAA A R A  LAR  +P   A+LI +RGLAGAADHHGPPKVN WQDPMSPSKWKEE
Sbjct: 1  MATLAAIAARRAATLARTPAPSQAASLIPRRGLAGAADHHGPPKVNFWQDPMSPSKWKEE 60

Query: 61 HFVLVSLSGWALLISGGYKFFTRGKG-KDEKLAEASQ 97
          HFV+VSLSGW LLI  GYKFFT GKG K+E LAEA+Q
Sbjct: 61 HFVIVSLSGWGLLIFSGYKFFTGGKGKKEENLAEAAQ 97

[Close]
BLAST of Csa6G124050 vs. TrEMBL
Match: A9P9R5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s13590g PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.9e-33
Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 1 

Query: 1  MATLAAAAVRHARALARVSSPQSTAN---LIHKRGLAGAADHHGPPKVNCWQDPMSPSKW 60
          MATLAAAA R A  L+R+SSP++ A    LIH+RGLAGAADHHGPP++NCWQDPMSPSKW
Sbjct: 1  MATLAAAAARQAVTLSRISSPKTPAQAAALIHRRGLAGAADHHGPPRINCWQDPMSPSKW 60

Query: 61 KEEHFVLVSLSGWALLISGGYKFFTRGK-GKDEKLAEAS 96
          KEEHFV+VSLSGW +LI GGYKFFT GK  K+EK  EA+
Sbjct: 61 KEEHFVIVSLSGWGVLIYGGYKFFTGGKSNKEEKPLEAA 99

[Close]
BLAST of Csa6G124050 vs. TrEMBL
Match: A0A061E2R8_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_007961 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.9e-32
Identity = 72/95 (75.79%), Postives = 77/95 (81.05%), Query Frame = 1 

Query: 1  MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60
          MATLAA A R A  LAR  +P   A+LI +RGLAGAADHHGPPKVN WQDPMSPSKWKEE
Sbjct: 1  MATLAAIAARRAATLARTPAPSQAASLIPRRGLAGAADHHGPPKVNFWQDPMSPSKWKEE 60

Query: 61 HFVLVSLSGWALLISGGYKFFTRGKG-KDEKLAEA 95
          HFV+VSLSGW LLI  GYKFFT GKG K+E LAEA
Sbjct: 61 HFVIVSLSGWGLLIFSGYKFFTGGKGKKEENLAEA 95

[Close]
BLAST of Csa6G124050 vs. TAIR10
Match: AT2G20820.2 (AT2G20820.2 unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-09
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1 

Query: 6  AAAVRHARALARVSSPQ---STANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEEHF 64
          A+  R A +LA++ S +     A++  +R LAGAADHHG  KV+ W+ P +P  WKEEH+
Sbjct: 2  ASFARRAMSLAQIPSARISSGAASIGQRRCLAGAADHHGSTKVDFWKQPTNPGNWKEEHW 61

[Close]
BLAST of Csa6G124050 vs. NCBI nr
Match: gi|700191486|gb|KGN46690.1| (hypothetical protein Csa_6G124050 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 3.5e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60
          MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE
Sbjct: 1  MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61 HFVLVSLSGWALLISGGYKFFTRGKGKDEKLAEASQ 97
          HFVLVSLSGWALLISGGYKFFTRGKGKDEKLAEASQ
Sbjct: 61 HFVLVSLSGWALLISGGYKFFTRGKGKDEKLAEASQ 96

[Close]
BLAST of Csa6G124050 vs. NCBI nr
Match: gi|659094714|ref|XP_008448206.1| (PREDICTED: uncharacterized protein LOC103490467 [Cucumis melo])

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43
Identity = 90/97 (92.78%), Postives = 92/97 (94.85%), Query Frame = 1 

Query: 1  MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60
          MATLAAAAVR ARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE
Sbjct: 1  MATLAAAAVRQARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61 HFVLVSLSGWALLISGGYKFFTRGKG-KDEKLAEASQ 97
          HFVLVSLSGW +LI GGYKFFTRGKG KDEK+ EASQ
Sbjct: 61 HFVLVSLSGWGVLIFGGYKFFTRGKGNKDEKIVEASQ 97

[Close]
BLAST of Csa6G124050 vs. NCBI nr
Match: gi|590690397|ref|XP_007043497.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 148.7 bits (374), Expect = 5.4e-33
Identity = 73/97 (75.26%), Postives = 79/97 (81.44%), Query Frame = 1 

Query: 1  MATLAAAAVRHARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60
          MATLAA A R A  LAR  +P   A+LI +RGLAGAADHHGPPKVN WQDPMSPSKWKEE
Sbjct: 1  MATLAAIAARRAATLARTPAPSQAASLIPRRGLAGAADHHGPPKVNFWQDPMSPSKWKEE 60

Query: 61 HFVLVSLSGWALLISGGYKFFTRGKG-KDEKLAEASQ 97
          HFV+VSLSGW LLI  GYKFFT GKG K+E LAEA+Q
Sbjct: 61 HFVIVSLSGWGLLIFSGYKFFTGGKGKKEENLAEAAQ 97

[Close]
BLAST of Csa6G124050 vs. NCBI nr
Match: gi|118481328|gb|ABK92607.1| (unknown [Populus trichocarpa])

HSP 1 Score: 148.7 bits (374), Expect = 5.4e-33
Identity = 73/99 (73.74%), Postives = 83/99 (83.84%), Query Frame = 1 

Query: 1  MATLAAAAVRHARALARVSSPQSTAN---LIHKRGLAGAADHHGPPKVNCWQDPMSPSKW 60
          MATLAAAA R A  L+RVSSP++ A    LIH+RGLAGAADHHGPP++NCWQDPMSPSKW
Sbjct: 1  MATLAAAAARQAVTLSRVSSPKTPAQAAALIHRRGLAGAADHHGPPRINCWQDPMSPSKW 60

Query: 61 KEEHFVLVSLSGWALLISGGYKFFTRGK-GKDEKLAEAS 96
          KEEHFV+VSLSGW +LI GGYKFFT GK  K+EK  EA+
Sbjct: 61 KEEHFVIVSLSGWGVLIYGGYKFFTGGKSNKEEKPLEAA 99

[Close]
BLAST of Csa6G124050 vs. NCBI nr
Match: gi|566243979|ref|XP_006371606.1| (hypothetical protein POPTR_0019s13590g [Populus trichocarpa])

HSP 1 Score: 148.3 bits (373), Expect = 7.0e-33
Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 1 

Query: 1  MATLAAAAVRHARALARVSSPQSTAN---LIHKRGLAGAADHHGPPKVNCWQDPMSPSKW 60
          MATLAAAA R A  L+R+SSP++ A    LIH+RGLAGAADHHGPP++NCWQDPMSPSKW
Sbjct: 1  MATLAAAAARQAVTLSRISSPKTPAQAAALIHRRGLAGAADHHGPPRINCWQDPMSPSKW 60

Query: 61 KEEHFVLVSLSGWALLISGGYKFFTRGK-GKDEKLAEAS 96
          KEEHFV+VSLSGW +LI GGYKFFT GK  K+EK  EA+
Sbjct: 61 KEEHFVIVSLSGWGVLIYGGYKFFTGGKSNKEEKPLEAA 99

The following BLAST results are available for this feature:
BLAST of Csa6G124050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAD9_CUCSA2.4e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124050 PE=4 SV=1[more]
A9P8A4_POPTR3.7e-3373.74Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
A0A061EAM4_THECC3.7e-3375.26Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_007961 PE=4 SV=1[more]
A9P9R5_POPTR4.9e-3372.73Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s13590g PE=2 SV=1[more]
A0A061E2R8_THECC1.9e-3275.79Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_007961 PE=4 SV=1[more]
BLAST of Csa6G124050 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G20820.22.6e-0944.26 unknown protein[more]
BLAST of Csa6G124050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191486|gb|KGN46690.1|3.5e-48100.00hypothetical protein Csa_6G124050 [Cucumis sativus][more]
gi|659094714|ref|XP_008448206.1|1.2e-4392.78PREDICTED: uncharacterized protein LOC103490467 [Cucumis melo][more]
gi|590690397|ref|XP_007043497.1|5.4e-3375.26Uncharacterized protein isoform 1 [Theobroma cacao][more]
gi|118481328|gb|ABK92607.1|5.4e-3373.74unknown [Populus trichocarpa][more]
gi|566243979|ref|XP_006371606.1|7.0e-3372.73hypothetical protein POPTR_0019s13590g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009853 photorespiration
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016874 ligase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU086456cucumber EST collection version 3.0transcribed_cluster
CU089372cucumber EST collection version 3.0transcribed_cluster
CU096640cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G124050.1Csa6G124050.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU086456CU086456transcribed_cluster
CU089372CU089372transcribed_cluster
CU096640CU096640transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35292FAMILY NOT NAMEDcoord: 1..89
score: 8.6
NoneNo IPR availablePANTHERPTHR35292:SF1SUBFAMILY NOT NAMEDcoord: 1..89
score: 8.6