Csa6G102510.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAACGTTCACCAGGTTCAGACACATTTCTAACATCTTTGTGGAAGAAGCTCATTTGTTTCTTCCTTTAGGATTACCAATCCCTGCGTATGTTTCTTCCTTTAATTGTATATGGATGCCCAACTCTTTTTTAAAAAAATTGATTAAAAATATTATTGTTTGTGTAATTATTTTTTGACTAGCAAATGGCATAAGACATAATAGGTATGATCAGGTTTTGAAGGCATCTCATGCTTTCAACATATTGGACTCAAGAGGCTTCATTGGAGTAACCGAGCGTGCTCGTTATTTTGGTCGAATGCGAAGGTTAGAGCAATAGCTTTAACTTTTCTCTTTCTTCATTTTCTTTCTTCTTAAGATAGAGACTTGATGCGAAGTTTTTTGTTTTTCTTTTTCCCCAGCATTTGTTCTTATTGGTTGATTTTAGTTTAGATTTCTTTATGTGCTGAAATTAATTTCATTCCATCAGTTTAGCTCGTCAGTGTGCGCAACTGTGGCTGATAACCCGAGAATCCCTAGGTCATCCACTTGGTGTTGCTTCTGATCCTGTTGATCTTGTTATGTCCTAA ATGGCAACGTTCACCAGGTTCAGACACATTTCTAACATCTTTGTGGAAGAAGCTCATTTGTTTCTTCCTTTAGGATTACCAATCCCTGCGTATGTTTCTTCCTTTAATTCAAATGGCATAAGACATAATAGGTATGATCAGGTTTTGAAGGCATCTCATGCTTTCAACATATTGGACTCAAGAGGCTTCATTGGAGTAACCGAGCGTGCTCGTTATTTTGGTCGAATGCGAAGTTTAGCTCGTCAGTGTGCGCAACTGTGGCTGATAACCCGAGAATCCCTAGGTCATCCACTTGGTGTTGCTTCTGATCCTGTTGATCTTGTTATGTCCTAA ATGGCAACGTTCACCAGGTTCAGACACATTTCTAACATCTTTGTGGAAGAAGCTCATTTGTTTCTTCCTTTAGGATTACCAATCCCTGCGTATGTTTCTTCCTTTAATTCAAATGGCATAAGACATAATAGGTATGATCAGGTTTTGAAGGCATCTCATGCTTTCAACATATTGGACTCAAGAGGCTTCATTGGAGTAACCGAGCGTGCTCGTTATTTTGGTCGAATGCGAAGTTTAGCTCGTCAGTGTGCGCAACTGTGGCTGATAACCCGAGAATCCCTAGGTCATCCACTTGGTGTTGCTTCTGATCCTGTTGATCTTGTTATGTCCTAA MATFTRFRHISNIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLVMS*
BLAST of Csa6G102510.1 vs. Swiss-Prot
Match: SYGM2_ARATH (Glycine--tRNA ligase, chloroplastic/mitochondrial 2 OS=Arabidopsis thaliana GN=EDD1 PE=1 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 6.4e-30 Identity = 70/104 (67.31%), Postives = 74/104 (71.15%), Query Frame = 1
BLAST of Csa6G102510.1 vs. Swiss-Prot
Match: SYGA_SYNP6 (Glycine--tRNA ligase alpha subunit OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=glyQ PE=3 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 3.2e-13 Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1
BLAST of Csa6G102510.1 vs. Swiss-Prot
Match: SYGA_SYNE7 (Glycine--tRNA ligase alpha subunit OS=Synechococcus elongatus (strain PCC 7942) GN=glyQ PE=3 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 3.2e-13 Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1
BLAST of Csa6G102510.1 vs. Swiss-Prot
Match: SYGA_SULSY (Glycine--tRNA ligase alpha subunit OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=glyQ PE=3 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 3.2e-13 Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 1
BLAST of Csa6G102510.1 vs. Swiss-Prot
Match: SYG_CHLMU (Glycine--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=glyQS PE=3 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 3.2e-13 Identity = 44/85 (51.76%), Postives = 49/85 (57.65%), Query Frame = 1
BLAST of Csa6G102510.1 vs. TrEMBL
Match: A0A0A0KCD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102510 PE=4 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 8.0e-56 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1
BLAST of Csa6G102510.1 vs. TrEMBL
Match: A0A0A0KFM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106190 PE=3 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 1.2e-32 Identity = 78/97 (80.41%), Postives = 78/97 (80.41%), Query Frame = 1
BLAST of Csa6G102510.1 vs. TrEMBL
Match: D7LRI9_ARALL (Aminoacyl-t-RNA synthetase OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_485172 PE=3 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 2.1e-27 Identity = 69/104 (66.35%), Postives = 75/104 (72.12%), Query Frame = 1
BLAST of Csa6G102510.1 vs. TrEMBL
Match: R0HLM5_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10019555mg PE=3 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 2.7e-27 Identity = 69/104 (66.35%), Postives = 75/104 (72.12%), Query Frame = 1
BLAST of Csa6G102510.1 vs. TrEMBL
Match: A0A0D3CWI9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=EDD1 PE=3 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 2.3e-26 Identity = 67/104 (64.42%), Postives = 75/104 (72.12%), Query Frame = 1
BLAST of Csa6G102510.1 vs. TAIR10
Match: AT3G48110.1 (AT3G48110.1 glycine-tRNA ligases) HSP 1 Score: 131.3 bits (329), Expect = 3.6e-31 Identity = 70/104 (67.31%), Postives = 74/104 (71.15%), Query Frame = 1
BLAST of Csa6G102510.1 vs. NCBI nr
Match: gi|700191285|gb|KGN46489.1| (hypothetical protein Csa_6G102510 [Cucumis sativus]) HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1
BLAST of Csa6G102510.1 vs. NCBI nr
Match: gi|778712014|ref|XP_011656834.1| (PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial-like isoform X1 [Cucumis sativus]) HSP 1 Score: 185.7 bits (470), Expect = 4.5e-44 Identity = 96/110 (87.27%), Postives = 96/110 (87.27%), Query Frame = 1
BLAST of Csa6G102510.1 vs. NCBI nr
Match: gi|778712119|ref|XP_004140508.2| (PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Cucumis sativus]) HSP 1 Score: 147.1 bits (370), Expect = 1.8e-32 Identity = 78/97 (80.41%), Postives = 78/97 (80.41%), Query Frame = 1
BLAST of Csa6G102510.1 vs. NCBI nr
Match: gi|778712127|ref|XP_011656851.1| (PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X3 [Cucumis sativus]) HSP 1 Score: 147.1 bits (370), Expect = 1.8e-32 Identity = 78/97 (80.41%), Postives = 78/97 (80.41%), Query Frame = 1
BLAST of Csa6G102510.1 vs. NCBI nr
Match: gi|778712131|ref|XP_011656852.1| (PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X4 [Cucumis sativus]) HSP 1 Score: 147.1 bits (370), Expect = 1.8e-32 Identity = 78/97 (80.41%), Postives = 78/97 (80.41%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
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