Csa6G102510 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G102510
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionGlycine--tRNA ligase alpha subunit; contains IPR006194 (Glycine-tRNA synthetase, heterodimeric)
LocationChr6 : 6750536 .. 6751106 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACGTTCACCAGGTTCAGACACATTTCTAACATCTTTGTGGAAGAAGCTCATTTGTTTCTTCCTTTAGGATTACCAATCCCTGCGTATGTTTCTTCCTTTAATTGTATATGGATGCCCAACTCTTTTTTAAAAAAATTGATTAAAAATATTATTGTTTGTGTAATTATTTTTTGACTAGCAAATGGCATAAGACATAATAGGTATGATCAGGTTTTGAAGGCATCTCATGCTTTCAACATATTGGACTCAAGAGGCTTCATTGGAGTAACCGAGCGTGCTCGTTATTTTGGTCGAATGCGAAGGTTAGAGCAATAGCTTTAACTTTTCTCTTTCTTCATTTTCTTTCTTCTTAAGATAGAGACTTGATGCGAAGTTTTTTGTTTTTCTTTTTCCCCAGCATTTGTTCTTATTGGTTGATTTTAGTTTAGATTTCTTTATGTGCTGAAATTAATTTCATTCCATCAGTTTAGCTCGTCAGTGTGCGCAACTGTGGCTGATAACCCGAGAATCCCTAGGTCATCCACTTGGTGTTGCTTCTGATCCTGTTGATCTTGTTATGTCCTAA

mRNA sequence

ATGGCAACGTTCACCAGGTTCAGACACATTTCTAACATCTTTGTGGAAGAAGCTCATTTGTTTCTTCCTTTAGGATTACCAATCCCTGCGTATGTTTCTTCCTTTAATTCAAATGGCATAAGACATAATAGGTATGATCAGGTTTTGAAGGCATCTCATGCTTTCAACATATTGGACTCAAGAGGCTTCATTGGAGTAACCGAGCGTGCTCGTTATTTTGGTCGAATGCGAAGTTTAGCTCGTCAGTGTGCGCAACTGTGGCTGATAACCCGAGAATCCCTAGGTCATCCACTTGGTGTTGCTTCTGATCCTGTTGATCTTGTTATGTCCTAA

Coding sequence (CDS)

ATGGCAACGTTCACCAGGTTCAGACACATTTCTAACATCTTTGTGGAAGAAGCTCATTTGTTTCTTCCTTTAGGATTACCAATCCCTGCGTATGTTTCTTCCTTTAATTCAAATGGCATAAGACATAATAGGTATGATCAGGTTTTGAAGGCATCTCATGCTTTCAACATATTGGACTCAAGAGGCTTCATTGGAGTAACCGAGCGTGCTCGTTATTTTGGTCGAATGCGAAGTTTAGCTCGTCAGTGTGCGCAACTGTGGCTGATAACCCGAGAATCCCTAGGTCATCCACTTGGTGTTGCTTCTGATCCTGTTGATCTTGTTATGTCCTAA

Protein sequence

MATFTRFRHISNIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLVMS*
Homology
[Close]
BLAST of Csa6G102510 vs. Swiss-Prot
Match: SYGM2_ARATH (Glycine--tRNA ligase, chloroplastic/mitochondrial 2 OS=Arabidopsis thaliana GN=EDD1 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.4e-30
Identity = 70/104 (67.31%), Postives = 74/104 (71.15%), Query Frame = 1 

Query: 2   ATFTRFRHISNIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDSR 61
           A+  R +   + F EEA   L LGLPIPA              YDQ+LK SHAFNILD+R
Sbjct: 274 ASVDRLQKHFDYFDEEARSLLALGLPIPA--------------YDQLLKTSHAFNILDAR 333

Query: 62  GFIGVTERARYFGRMRSLARQCAQLWLITRESLGHPLGVASDPV 106
           GFIGVTERARYFGRMRSLARQCAQLWL TRESLGHPLGVAS+PV
Sbjct: 334 GFIGVTERARYFGRMRSLARQCAQLWLATRESLGHPLGVASEPV 363

[Close]
BLAST of Csa6G102510 vs. Swiss-Prot
Match: SYGA_SYNP6 (Glycine--tRNA ligase alpha subunit OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=glyQ PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-13
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1 

Query: 39  GIRHNRYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCAQLWLITRESLGHPL 98
           G+ H   D VLK SH+FN+LD+RG I VTER RY GR+R++ARQ A+L+L  RE LG PL
Sbjct: 227 GLVHPSLDYVLKCSHSFNLLDARGLISVTERTRYIGRIRNMARQVAKLYLEQREQLGFPL 286

[Close]
BLAST of Csa6G102510 vs. Swiss-Prot
Match: SYGA_SYNE7 (Glycine--tRNA ligase alpha subunit OS=Synechococcus elongatus (strain PCC 7942) GN=glyQ PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-13
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1 

Query: 39  GIRHNRYDQVLKASHAFNILDSRGFIGVTERARYFGRMRSLARQCAQLWLITRESLGHPL 98
           G+ H   D VLK SH+FN+LD+RG I VTER RY GR+R++ARQ A+L+L  RE LG PL
Sbjct: 227 GLVHPSLDYVLKCSHSFNLLDARGLISVTERTRYIGRIRNMARQVAKLYLEQREQLGFPL 286

[Close]
BLAST of Csa6G102510 vs. Swiss-Prot
Match: SYGA_SULSY (Glycine--tRNA ligase alpha subunit OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=glyQ PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-13
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 1 

Query: 12  NIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDSRGFIGVTERAR 71
           +++ +E +  + L LPIPAY              D  LK SH FN+LD+RG + V ERAR
Sbjct: 214 DMYEQEGYKLISLNLPIPAY--------------DYALKCSHTFNLLDARGALSVNERAR 273

Query: 72  YFGRMRSLARQCAQLWLITRESLGHPL 99
           Y  R+R+LAR+CA+ ++  RE LG+PL
Sbjct: 274 YIARVRNLARECAKAFVKHREELGYPL 286

[Close]
BLAST of Csa6G102510 vs. Swiss-Prot
Match: SYG_CHLMU (Glycine--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=glyQS PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-13
Identity = 44/85 (51.76%), Postives = 49/85 (57.65%), Query Frame = 1 

Query: 14  FVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDSRGFIGVTERARYF 73
           F  EA   L  GLP+PAY              D V+KASHAFN+LDSRG I VTER RY 
Sbjct: 221 FAAEALATLDKGLPLPAY--------------DFVIKASHAFNMLDSRGVISVTERTRYI 280

Query: 74  GRMRSLARQCAQLWLITRESLGHPL 99
            ++R LAR  A  ++I RESLG PL
Sbjct: 281 TKIRQLARAVADKYVIWRESLGFPL 291

[Close]
BLAST of Csa6G102510 vs. TrEMBL
Match: A0A0A0KCD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102510 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 8.0e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MATFTRFRHISNIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDS 60
           MATFTRFRHISNIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDS
Sbjct: 1   MATFTRFRHISNIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDS 60

Query: 61  RGFIGVTERARYFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLVMS 111
           RGFIGVTERARYFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLVMS
Sbjct: 61  RGFIGVTERARYFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLVMS 110

[Close]
BLAST of Csa6G102510 vs. TrEMBL
Match: A0A0A0KFM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106190 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-32
Identity = 78/97 (80.41%), Postives = 78/97 (80.41%), Query Frame = 1 

Query: 12  NIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDSRGFIGVTERAR 71
           NIF EEAH  L LGL IPA              YDQVLKASHAFNILDSRGFIGVTERAR
Sbjct: 285 NIFEEEAHSLLALGLAIPA--------------YDQVLKASHAFNILDSRGFIGVTERAR 344

Query: 72  YFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLV 109
           YFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLV
Sbjct: 345 YFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLV 367

[Close]
BLAST of Csa6G102510 vs. TrEMBL
Match: D7LRI9_ARALL (Aminoacyl-t-RNA synthetase OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_485172 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-27
Identity = 69/104 (66.35%), Postives = 75/104 (72.12%), Query Frame = 1 

Query: 2   ATFTRFRHISNIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDSR 61
           A+  R +   + F EEA   L LGLPIPA              YDQ+LK SHAFNILD+R
Sbjct: 274 ASVDRLQKHFDYFDEEARSLLALGLPIPA--------------YDQLLKTSHAFNILDAR 333

Query: 62  GFIGVTERARYFGRMRSLARQCAQLWLITRESLGHPLGVASDPV 106
           GFIGVTERARYFGRMRSLARQCAQLWL TRESLGHPLGV S+PV
Sbjct: 334 GFIGVTERARYFGRMRSLARQCAQLWLATRESLGHPLGVVSEPV 363

[Close]
BLAST of Csa6G102510 vs. TrEMBL
Match: R0HLM5_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10019555mg PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-27
Identity = 69/104 (66.35%), Postives = 75/104 (72.12%), Query Frame = 1 

Query: 2   ATFTRFRHISNIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDSR 61
           A+  R +   + F EEA   L LGLPIPA              YDQ+LK SHAFNILD+R
Sbjct: 275 ASVDRLQKHFDFFDEEARSLLALGLPIPA--------------YDQLLKTSHAFNILDAR 334

Query: 62  GFIGVTERARYFGRMRSLARQCAQLWLITRESLGHPLGVASDPV 106
           GFIGVTERARYFGRMRSLARQCAQLWL TRESLGHPLGV S+PV
Sbjct: 335 GFIGVTERARYFGRMRSLARQCAQLWLKTRESLGHPLGVVSEPV 364

[Close]
BLAST of Csa6G102510 vs. TrEMBL
Match: A0A0D3CWI9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=EDD1 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-26
Identity = 67/104 (64.42%), Postives = 75/104 (72.12%), Query Frame = 1 

Query: 2   ATFTRFRHISNIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDSR 61
           A+  R +   + F EEA   L LGLPIPA              YDQ+LK SHAFNILD+R
Sbjct: 271 ASVNRLQKHFDSFDEEARSLLALGLPIPA--------------YDQLLKTSHAFNILDAR 330

Query: 62  GFIGVTERARYFGRMRSLARQCAQLWLITRESLGHPLGVASDPV 106
           GF+GVTERARYFGRMRSLARQCAQLWL TRESLGHPLGVAS+ +
Sbjct: 331 GFVGVTERARYFGRMRSLARQCAQLWLKTRESLGHPLGVASEHI 360

[Close]
BLAST of Csa6G102510 vs. TAIR10
Match: AT3G48110.1 (AT3G48110.1 glycine-tRNA ligases)

HSP 1 Score: 131.3 bits (329), Expect = 3.6e-31
Identity = 70/104 (67.31%), Postives = 74/104 (71.15%), Query Frame = 1 

Query: 2   ATFTRFRHISNIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDSR 61
           A+  R +   + F EEA   L LGLPIPA              YDQ+LK SHAFNILD+R
Sbjct: 274 ASVDRLQKHFDYFDEEARSLLALGLPIPA--------------YDQLLKTSHAFNILDAR 333

Query: 62  GFIGVTERARYFGRMRSLARQCAQLWLITRESLGHPLGVASDPV 106
           GFIGVTERARYFGRMRSLARQCAQLWL TRESLGHPLGVAS+PV
Sbjct: 334 GFIGVTERARYFGRMRSLARQCAQLWLATRESLGHPLGVASEPV 363

[Close]
BLAST of Csa6G102510 vs. NCBI nr
Match: gi|700191285|gb|KGN46489.1| (hypothetical protein Csa_6G102510 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MATFTRFRHISNIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDS 60
           MATFTRFRHISNIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDS
Sbjct: 1   MATFTRFRHISNIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDS 60

Query: 61  RGFIGVTERARYFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLVMS 111
           RGFIGVTERARYFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLVMS
Sbjct: 61  RGFIGVTERARYFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLVMS 110

[Close]
BLAST of Csa6G102510 vs. NCBI nr
Match: gi|778712014|ref|XP_011656834.1| (PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial-like isoform X1 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 4.5e-44
Identity = 96/110 (87.27%), Postives = 96/110 (87.27%), Query Frame = 1 

Query: 1   MATFTRFRHISNIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDS 60
           MATFTRFRHISNIFVEEAHLFLPLGLPIPA              YDQVLKASHAFNILDS
Sbjct: 1   MATFTRFRHISNIFVEEAHLFLPLGLPIPA--------------YDQVLKASHAFNILDS 60

Query: 61  RGFIGVTERARYFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLVMS 111
           RGFIGVTERARYFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLVMS
Sbjct: 61  RGFIGVTERARYFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLVMS 96

[Close]
BLAST of Csa6G102510 vs. NCBI nr
Match: gi|778712119|ref|XP_004140508.2| (PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-32
Identity = 78/97 (80.41%), Postives = 78/97 (80.41%), Query Frame = 1 

Query: 12  NIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDSRGFIGVTERAR 71
           NIF EEAH  L LGL IPA              YDQVLKASHAFNILDSRGFIGVTERAR
Sbjct: 285 NIFEEEAHSLLALGLAIPA--------------YDQVLKASHAFNILDSRGFIGVTERAR 344

Query: 72  YFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLV 109
           YFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLV
Sbjct: 345 YFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLV 367

[Close]
BLAST of Csa6G102510 vs. NCBI nr
Match: gi|778712127|ref|XP_011656851.1| (PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X3 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-32
Identity = 78/97 (80.41%), Postives = 78/97 (80.41%), Query Frame = 1 

Query: 12  NIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDSRGFIGVTERAR 71
           NIF EEAH  L LGL IPA              YDQVLKASHAFNILDSRGFIGVTERAR
Sbjct: 181 NIFEEEAHSLLALGLAIPA--------------YDQVLKASHAFNILDSRGFIGVTERAR 240

Query: 72  YFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLV 109
           YFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLV
Sbjct: 241 YFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLV 263

[Close]
BLAST of Csa6G102510 vs. NCBI nr
Match: gi|778712131|ref|XP_011656852.1| (PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X4 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-32
Identity = 78/97 (80.41%), Postives = 78/97 (80.41%), Query Frame = 1 

Query: 12  NIFVEEAHLFLPLGLPIPAYVSSFNSNGIRHNRYDQVLKASHAFNILDSRGFIGVTERAR 71
           NIF EEAH  L LGL IPA              YDQVLKASHAFNILDSRGFIGVTERAR
Sbjct: 84  NIFEEEAHSLLALGLAIPA--------------YDQVLKASHAFNILDSRGFIGVTERAR 143

Query: 72  YFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLV 109
           YFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLV
Sbjct: 144 YFGRMRSLARQCAQLWLITRESLGHPLGVASDPVDLV 166

The following BLAST results are available for this feature:
BLAST of Csa6G102510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SYGM2_ARATH6.4e-3067.31Glycine--tRNA ligase, chloroplastic/mitochondrial 2 OS=Arabidopsis thaliana GN=E... [more]
SYGA_SYNP63.2e-1360.00Glycine--tRNA ligase alpha subunit OS=Synechococcus sp. (strain ATCC 27144 / PCC... [more]
SYGA_SYNE73.2e-1360.00Glycine--tRNA ligase alpha subunit OS=Synechococcus elongatus (strain PCC 7942) ... [more]
SYGA_SULSY3.2e-1343.68Glycine--tRNA ligase alpha subunit OS=Sulfurihydrogenibium sp. (strain YO3AOP1) ... [more]
SYG_CHLMU3.2e-1351.76Glycine--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=glyQS PE=3 S... [more]
BLAST of Csa6G102510 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCD6_CUCSA8.0e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102510 PE=4 SV=1[more]
A0A0A0KFM2_CUCSA1.2e-3280.41Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106190 PE=3 SV=1[more]
D7LRI9_ARALL2.1e-2766.35Aminoacyl-t-RNA synthetase OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_485... [more]
R0HLM5_9BRAS2.7e-2766.35Uncharacterized protein OS=Capsella rubella GN=CARUB_v10019555mg PE=3 SV=1[more]
A0A0D3CWI9_BRAOL2.3e-2664.42Uncharacterized protein OS=Brassica oleracea var. oleracea GN=EDD1 PE=3 SV=1[more]
BLAST of Csa6G102510 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G48110.13.6e-3167.31 glycine-tRNA ligases[more]
BLAST of Csa6G102510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191285|gb|KGN46489.1|1.2e-55100.00hypothetical protein Csa_6G102510 [Cucumis sativus][more]
gi|778712014|ref|XP_011656834.1|4.5e-4487.27PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial-like isoform X1 [... [more]
gi|778712119|ref|XP_004140508.2|1.8e-3280.41PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Cucum... [more]
gi|778712127|ref|XP_011656851.1|1.8e-3280.41PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X3 [Cucum... [more]
gi|778712131|ref|XP_011656852.1|1.8e-3280.41PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X4 [Cucum... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002310Gly-tRNA_ligase_asu
IPR006194Gly-tRNA-synth_heterodimer
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0004820glycine-tRNA ligase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006426glycyl-tRNA aminoacylation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009790 embryo development
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006426 glycyl-tRNA aminoacylation
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0009791 post-embryonic development
biological_process GO:0048608 reproductive structure development
biological_process GO:0044702 single organism reproductive process
biological_process GO:0006566 threonine metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0009345 glycine-tRNA ligase complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0004820 glycine-tRNA ligase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0016874 ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G102510.1Csa6G102510.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002310Glycine-tRNA ligase, alpha subunitPFAMPF02091tRNA-synt_2ecoord: 37..91
score: 4.7
IPR006194Glycine-tRNA synthetase, heterodimericPROFILEPS50861AA_TRNA_LIGASE_II_GLYABcoord: 45..88
score: 12
NoneNo IPR availableGENE3DG3DSA:1.20.58.180coord: 37..98
score: 5.7
NoneNo IPR availablePANTHERPTHR30075GLYCYL-TRNA SYNTHETASEcoord: 1..110
score: 5.5
NoneNo IPR availablePANTHERPTHR30075:SF3GLYCINE--TRNA LIGASE 2, CHLOROPLASTIC/MITOCHONDRIALcoord: 1..110
score: 5.5
NoneNo IPR availableunknownSSF55681Class II aaRS and biotin synthetasescoord: 37..93
score: 2.48

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G102510Cla006726Watermelon (97103) v1cuwmB544
Csa6G102510ClCG06G002430Watermelon (Charleston Gray)cuwcgB476
Csa6G102510Lsi09G016950Bottle gourd (USVL1VR-Ls)culsiB402
Csa6G102510MELO3C022290.2Melon (DHL92) v3.6.1cumedB422
Csa6G102510Cla97C06G111780Watermelon (97103) v2cuwmbB468
Csa6G102510CsGy6G008160Cucumber (Gy14) v2cgybcuB282
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G102510Cucurbita pepo (Zucchini)cpecuB318
Csa6G102510Cucurbita pepo (Zucchini)cpecuB331
Csa6G102510Silver-seed gourdcarcuB0089
Csa6G102510Silver-seed gourdcarcuB0093
Csa6G102510Cucumber (Gy14) v1cgycuB490
Csa6G102510Cucurbita maxima (Rimu)cmacuB897
Csa6G102510Cucurbita maxima (Rimu)cmacuB911
Csa6G102510Cucurbita moschata (Rifu)cmocuB882
Csa6G102510Cucurbita moschata (Rifu)cmocuB897