Csa6G014880.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G014880.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 1834859 .. 1835202 (-)
Sequence length	282

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCAACACTCACACTTCTAAATTAATCATCTATCTATCTATCTAATTACTTCCTTCTAAGCAATGGGAGGCCACAAGCACAAGAAATCTCATTCTTCTTTTTCTTTCTTTAGTTTTTTAAAATCTAAATGGAGCAGAAAAGGAGACCACTATGACCACGGTGGCTCATGGCTAGACGAGAAGTCGAGATCGGGCAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGGTTGCTGAACCCGGTATTGATCGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTCGAATCCGAGCGTCAAACCGTCACTATACCTACCAATGTGTAA

mRNA sequence

ATGGGAGGCCACAAGCACAAGAAATCTCATTCTTCTTTTTCTTTCTTTAGTTTTTTAAAATCTAAATGGAGCAGAAAAGGAGACCACTATGACCACGGTGGCTCATGGCTAGACGAGAAGTCGAGATCGGGCAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGGTTGCTGAACCCGGTATTGATCGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTCGAATCCGAGCGTCAAACCGTCACTATACCTACCAATGTGTAA

Coding sequence (CDS)

ATGGGAGGCCACAAGCACAAGAAATCTCATTCTTCTTTTTCTTTCTTTAGTTTTTTAAAATCTAAATGGAGCAGAAAAGGAGACCACTATGACCACGGTGGCTCATGGCTAGACGAGAAGTCGAGATCGGGCAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGGTTGCTGAACCCGGTATTGATCGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTCGAATCCGAGCGTCAAACCGTCACTATACCTACCAATGTGTAA

Protein sequence

MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV*

Homology

[Close]

BLAST of Csa6G014880.1 vs. TrEMBL
Match: A0A0A0K8V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 7.3e-50
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE
Sbjct: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 94
          PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 93

[Close]

BLAST of Csa6G014880.1 vs. TrEMBL
Match: A0A0A0KBW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 8.9e-40
Identity = 78/92 (84.78%), Postives = 82/92 (89.13%), Query Frame = 1


Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGG++ KKSHSSFS FSF KS+  RKGDHYDHGG+WLDE  RS KVWPSDEDKAHHWVAE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of Csa6G014880.1 vs. TrEMBL
Match: A0A0A0K7Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.4e-39
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 1


Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGG++ KKSHSSFS FSF KSK  RKGDHYDHGG+W DE  RS KVWPSDEDKAHHW+AE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of Csa6G014880.1 vs. TrEMBL
Match: A0A0A0KAK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.1e-35
Identity = 72/91 (79.12%), Postives = 78/91 (85.71%), Query Frame = 1


Query: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61
          G ++ KK+H+SFS FSF KS+  RKGDH +H GS LDE  RSGKVWPSDEDKAHHWVAEP
Sbjct: 3  GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          GIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPN 93

[Close]

BLAST of Csa6G014880.1 vs. TrEMBL
Match: A0A0A0K8W0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.9e-31
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = 1


Query: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61
          G H+ KK+HSSFS FSF KSK  RKGD Y+HG +W D  S S KVWPSDEDK + WVAEP
Sbjct: 3  GSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPS-SSKVWPSDEDKGYRWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          GIDRKAKDYIDRIY+NRVFE+ERQTVTI  N
Sbjct: 63 GIDRKAKDYIDRIYKNRVFETERQTVTIHPN 92

[Close]

BLAST of Csa6G014880.1 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-13
Identity = 41/88 (46.59%), Postives = 50/88 (56.82%), Query Frame = 1


Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGG     S   FS FSF K+   R+    +  GSW D+   + K   SDEDK  +WVAE
Sbjct: 1  MGGKNRSHSSKRFSLFSFFKT---RRSHRVEADGSW-DDFGYTRKAMASDEDK-RYWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVT 89
          PGIDRKA  +I + +  RV ESERQT++
Sbjct: 61 PGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of Csa6G014880.1 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 8.6e-10
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1


Query: 24 SRKGDHY--DHGGSWLDEKSRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFE 83
          +R+  H+  +   SW D+   + K W SDEDK  +WVAEPGIDRKA  +I + + +RV E
Sbjct: 3  ARRSSHHRVEADASW-DDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSE 62

Query: 84 SERQTV 88
          SERQT+
Sbjct: 63 SERQTL 66

[Close]

BLAST of Csa6G014880.1 vs. NCBI nr
Match: gi|700190664|gb|KGN45868.1| (hypothetical protein Csa_6G014880 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.0e-49
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE
Sbjct: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 94
          PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 93

[Close]

BLAST of Csa6G014880.1 vs. NCBI nr
Match: gi|700190663|gb|KGN45867.1| (hypothetical protein Csa_6G014870 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-39
Identity = 78/92 (84.78%), Postives = 82/92 (89.13%), Query Frame = 1


Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGG++ KKSHSSFS FSF KS+  RKGDHYDHGG+WLDE  RS KVWPSDEDKAHHWVAE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of Csa6G014880.1 vs. NCBI nr
Match: gi|700190666|gb|KGN45870.1| (hypothetical protein Csa_6G014900 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 4.9e-39
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 1


Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGG++ KKSHSSFS FSF KSK  RKGDHYDHGG+W DE  RS KVWPSDEDKAHHW+AE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of Csa6G014880.1 vs. NCBI nr
Match: gi|700190665|gb|KGN45869.1| (hypothetical protein Csa_6G014890 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 7.3e-35
Identity = 72/91 (79.12%), Postives = 78/91 (85.71%), Query Frame = 1


Query: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61
          G ++ KK+H+SFS FSF KS+  RKGDH +H GS LDE  RSGKVWPSDEDKAHHWVAEP
Sbjct: 3  GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          GIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPN 93

[Close]

BLAST of Csa6G014880.1 vs. NCBI nr
Match: gi|700190669|gb|KGN45873.1| (hypothetical protein Csa_6G016905 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-30
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = 1


Query: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61
          G H+ KK+HSSFS FSF KSK  RKGD Y+HG +W D  S S KVWPSDEDK + WVAEP
Sbjct: 3  GSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPS-SSKVWPSDEDKGYRWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          GIDRKAKDYIDRIY+NRVFE+ERQTVTI  N
Sbjct: 63 GIDRKAKDYIDRIYKNRVFETERQTVTIHPN 92

The following BLAST results are available for this feature:

BLAST of Csa6G014880.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8V3_CUCSA	7.3e-50	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1	[more]
A0A0A0KBW1_CUCSA	8.9e-40	84.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K7Y2_CUCSA	3.4e-39	83.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KAK6_CUCSA	5.1e-35	79.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1	[more]
A0A0A0K8W0_CUCSA	9.9e-31	73.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1	[more]

BLAST of Csa6G014880.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05858.1	2.9e-13	46.59	unknown protein	[more]
AT5G26620.1	8.6e-10	48.48	unknown protein	[more]

BLAST of Csa6G014880.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190664\|gb\|KGN45868.1\|	1.0e-49	100.00	hypothetical protein Csa_6G014880 [Cucumis sativus]	[more]
gi\|700190663\|gb\|KGN45867.1\|	1.3e-39	84.78	hypothetical protein Csa_6G014870 [Cucumis sativus]	[more]
gi\|700190666\|gb\|KGN45870.1\|	4.9e-39	83.70	hypothetical protein Csa_6G014900 [Cucumis sativus]	[more]
gi\|700190665\|gb\|KGN45869.1\|	7.3e-35	79.12	hypothetical protein Csa_6G014890 [Cucumis sativus]	[more]
gi\|700190669\|gb\|KGN45873.1\|	1.4e-30	73.63	hypothetical protein Csa_6G016905 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G014880	Csa6G014880	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa6G014880.1	Csa6G014880.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G014880.1.cds1	Csa6G014880.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G014880.1.utr5p1	Csa6G014880.1.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 2..87 score: 1.4