Csa6G014880 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G014880
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 1834859 .. 1835202 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCAACACTCACACTTCTAAATTAATCATCTATCTATCTATCTAATTACTTCCTTCTAAGCAATGGGAGGCCACAAGCACAAGAAATCTCATTCTTCTTTTTCTTTCTTTAGTTTTTTAAAATCTAAATGGAGCAGAAAAGGAGACCACTATGACCACGGTGGCTCATGGCTAGACGAGAAGTCGAGATCGGGCAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGGTTGCTGAACCCGGTATTGATCGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTCGAATCCGAGCGTCAAACCGTCACTATACCTACCAATGTGTAA

mRNA sequence

ATGGGAGGCCACAAGCACAAGAAATCTCATTCTTCTTTTTCTTTCTTTAGTTTTTTAAAATCTAAATGGAGCAGAAAAGGAGACCACTATGACCACGGTGGCTCATGGCTAGACGAGAAGTCGAGATCGGGCAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGGTTGCTGAACCCGGTATTGATCGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTCGAATCCGAGCGTCAAACCGTCACTATACCTACCAATGTGTAA

Coding sequence (CDS)

ATGGGAGGCCACAAGCACAAGAAATCTCATTCTTCTTTTTCTTTCTTTAGTTTTTTAAAATCTAAATGGAGCAGAAAAGGAGACCACTATGACCACGGTGGCTCATGGCTAGACGAGAAGTCGAGATCGGGCAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGGTTGCTGAACCCGGTATTGATCGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTCGAATCCGAGCGTCAAACCGTCACTATACCTACCAATGTGTAA

Protein sequence

MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV*
Homology
[Close]
BLAST of Csa6G014880 vs. TrEMBL
Match: A0A0A0K8V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 7.3e-50
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE
Sbjct: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 94
          PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 93

[Close]
BLAST of Csa6G014880 vs. TrEMBL
Match: A0A0A0KBW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 8.9e-40
Identity = 78/92 (84.78%), Postives = 82/92 (89.13%), Query Frame = 1 

Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGG++ KKSHSSFS FSF KS+  RKGDHYDHGG+WLDE  RS KVWPSDEDKAHHWVAE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]
BLAST of Csa6G014880 vs. TrEMBL
Match: A0A0A0K7Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.4e-39
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 1 

Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGG++ KKSHSSFS FSF KSK  RKGDHYDHGG+W DE  RS KVWPSDEDKAHHW+AE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]
BLAST of Csa6G014880 vs. TrEMBL
Match: A0A0A0KAK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.1e-35
Identity = 72/91 (79.12%), Postives = 78/91 (85.71%), Query Frame = 1 

Query: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61
          G ++ KK+H+SFS FSF KS+  RKGDH +H GS LDE  RSGKVWPSDEDKAHHWVAEP
Sbjct: 3  GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          GIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPN 93

[Close]
BLAST of Csa6G014880 vs. TrEMBL
Match: A0A0A0K8W0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.9e-31
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = 1 

Query: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61
          G H+ KK+HSSFS FSF KSK  RKGD Y+HG +W D  S S KVWPSDEDK + WVAEP
Sbjct: 3  GSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPS-SSKVWPSDEDKGYRWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          GIDRKAKDYIDRIY+NRVFE+ERQTVTI  N
Sbjct: 63 GIDRKAKDYIDRIYKNRVFETERQTVTIHPN 92

[Close]
BLAST of Csa6G014880 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-13
Identity = 41/88 (46.59%), Postives = 50/88 (56.82%), Query Frame = 1 

Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGG     S   FS FSF K+   R+    +  GSW D+   + K   SDEDK  +WVAE
Sbjct: 1  MGGKNRSHSSKRFSLFSFFKT---RRSHRVEADGSW-DDFGYTRKAMASDEDK-RYWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVT 89
          PGIDRKA  +I + +  RV ESERQT++
Sbjct: 61 PGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]
BLAST of Csa6G014880 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 8.6e-10
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 24 SRKGDHY--DHGGSWLDEKSRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFE 83
          +R+  H+  +   SW D+   + K W SDEDK  +WVAEPGIDRKA  +I + + +RV E
Sbjct: 3  ARRSSHHRVEADASW-DDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSE 62

Query: 84 SERQTV 88
          SERQT+
Sbjct: 63 SERQTL 66

[Close]
BLAST of Csa6G014880 vs. NCBI nr
Match: gi|700190664|gb|KGN45868.1| (hypothetical protein Csa_6G014880 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.0e-49
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE
Sbjct: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 94
          PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 93

[Close]
BLAST of Csa6G014880 vs. NCBI nr
Match: gi|700190663|gb|KGN45867.1| (hypothetical protein Csa_6G014870 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-39
Identity = 78/92 (84.78%), Postives = 82/92 (89.13%), Query Frame = 1 

Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGG++ KKSHSSFS FSF KS+  RKGDHYDHGG+WLDE  RS KVWPSDEDKAHHWVAE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]
BLAST of Csa6G014880 vs. NCBI nr
Match: gi|700190666|gb|KGN45870.1| (hypothetical protein Csa_6G014900 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 4.9e-39
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 1 

Query: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60
          MGG++ KKSHSSFS FSF KSK  RKGDHYDHGG+W DE  RS KVWPSDEDKAHHW+AE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]
BLAST of Csa6G014880 vs. NCBI nr
Match: gi|700190665|gb|KGN45869.1| (hypothetical protein Csa_6G014890 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 7.3e-35
Identity = 72/91 (79.12%), Postives = 78/91 (85.71%), Query Frame = 1 

Query: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61
          G ++ KK+H+SFS FSF KS+  RKGDH +H GS LDE  RSGKVWPSDEDKAHHWVAEP
Sbjct: 3  GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          GIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPN 93

[Close]
BLAST of Csa6G014880 vs. NCBI nr
Match: gi|700190669|gb|KGN45873.1| (hypothetical protein Csa_6G016905 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-30
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = 1 

Query: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61
          G H+ KK+HSSFS FSF KSK  RKGD Y+HG +W D  S S KVWPSDEDK + WVAEP
Sbjct: 3  GSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPS-SSKVWPSDEDKGYRWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          GIDRKAKDYIDRIY+NRVFE+ERQTVTI  N
Sbjct: 63 GIDRKAKDYIDRIYKNRVFETERQTVTIHPN 92

The following BLAST results are available for this feature:
BLAST of Csa6G014880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8V3_CUCSA7.3e-50100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1[more]
A0A0A0KBW1_CUCSA8.9e-4084.78Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1[more]
A0A0A0K7Y2_CUCSA3.4e-3983.70Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1[more]
A0A0A0KAK6_CUCSA5.1e-3579.12Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1[more]
A0A0A0K8W0_CUCSA9.9e-3173.63Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1[more]
BLAST of Csa6G014880 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G05858.12.9e-1346.59 unknown protein[more]
AT5G26620.18.6e-1048.48 unknown protein[more]
BLAST of Csa6G014880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190664|gb|KGN45868.1|1.0e-49100.00hypothetical protein Csa_6G014880 [Cucumis sativus][more]
gi|700190663|gb|KGN45867.1|1.3e-3984.78hypothetical protein Csa_6G014870 [Cucumis sativus][more]
gi|700190666|gb|KGN45870.1|4.9e-3983.70hypothetical protein Csa_6G014900 [Cucumis sativus][more]
gi|700190665|gb|KGN45869.1|7.3e-3579.12hypothetical protein Csa_6G014890 [Cucumis sativus][more]
gi|700190669|gb|KGN45873.1|1.4e-3073.63hypothetical protein Csa_6G016905 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G014880.1Csa6G014880.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33511FAMILY NOT NAMEDcoord: 2..87
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G014880Bhi04G001779Wax gourdcuwgoB589
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G014880Cucumber (Gy14) v1cgycuB511
Csa6G014880Cucurbita maxima (Rimu)cmacuB032
Csa6G014880Cucurbita maxima (Rimu)cmacuB485
Csa6G014880Cucurbita moschata (Rifu)cmocuB022
Csa6G014880Cucurbita moschata (Rifu)cmocuB473
Csa6G014880Melon (DHL92) v3.5.1cumeB415
Csa6G014880Watermelon (Charleston Gray)cuwcgB500
Csa6G014880Watermelon (97103) v1cuwmB475
Csa6G014880Cucurbita pepo (Zucchini)cpecuB584
Csa6G014880Bottle gourd (USVL1VR-Ls)culsiB471
Csa6G014880Cucumber (Gy14) v2cgybcuB282
Csa6G014880Melon (DHL92) v3.6.1cumedB455
Csa6G014880Watermelon (97103) v2cuwmbB490