Csa4G675250.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa4G675250.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 23415992 .. 23416412 (+)
Sequence length285
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGACGATGGGAAATCGAAAAATACGAGAACCTTATCTCAAACGTTAATCGATAGGCTGGGAAAAAGCCACACACACTCAAAGCACTATCTCGCTAAAGCCCACCACCAAATTTCTACCTTCTTTGCCTTCACCACCATATGTTTTTCAAAACATTCCTCATCCACTCCAACCTCTTCAACTCTCTTTCACTCACCACTCTCTTCTTCTGGTATCTACAACTCTTCTAATTCCAACTCAAAGACGCTCTTCAATGTCATGTGGCATGCTCCAACAGGTAGCTCATTCCCACTGCTGATTACCCATTTTCTTGTTGTTAGGTTTTACCCTTTTCATTTGCTTCCATCAGCTTTTTGATTGTTTTATTATATACTTCTGTAATCACTTGTGGGAATTCCGTTTTGTTGGGTCAGATTGA

mRNA sequence

ATGTGTGACGATGGGAAATCGAAAAATACGAGAACCTTATCTCAAACGTTAATCGATAGGCTGGGAAAAAGCCACACACACTCAAAGCACTATCTCGCTAAAGCCCACCACCAAATTTCTACCTTCTTTGCCTTCACCACCATATGTTTTTCAAAACATTCCTCATCCACTCCAACCTCTTCAACTCTCTTTCACTCACCACTCTCTTCTTCTGGTATCTACAACTCTTCTAATTCCAACTCAAAGACGCTCTTCAATGTCATGTGGCATGCTCCAACAGATTGA

Coding sequence (CDS)

ATGTGTGACGATGGGAAATCGAAAAATACGAGAACCTTATCTCAAACGTTAATCGATAGGCTGGGAAAAAGCCACACACACTCAAAGCACTATCTCGCTAAAGCCCACCACCAAATTTCTACCTTCTTTGCCTTCACCACCATATGTTTTTCAAAACATTCCTCATCCACTCCAACCTCTTCAACTCTCTTTCACTCACCACTCTCTTCTTCTGGTATCTACAACTCTTCTAATTCCAACTCAAAGACGCTCTTCAATGTCATGTGGCATGCTCCAACAGATTGA

Protein sequence

MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTSSTLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD*
Homology
[Close]
BLAST of Csa4G675250.1 vs. TrEMBL
Match: A0A0A0L0W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G675250 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 6.9e-48
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTS 60
          MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTS
Sbjct: 1  MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTS 60

Query: 61 STLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD 95
          STLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD
Sbjct: 61 STLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD 94

[Close]
BLAST of Csa4G675250.1 vs. NCBI nr
Match: gi|700200417|gb|KGN55575.1| (hypothetical protein Csa_4G675250 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 9.9e-48
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTS 60
          MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTS
Sbjct: 1  MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTS 60

Query: 61 STLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD 95
          STLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD
Sbjct: 61 STLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD 94

The following BLAST results are available for this feature:
BLAST of Csa4G675250.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0W1_CUCSA6.9e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G675250 PE=4 SV=1[more]
BLAST of Csa4G675250.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200417|gb|KGN55575.1|9.9e-48100.00hypothetical protein Csa_4G675250 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa4G675250Csa4G675250gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa4G675250.1Csa4G675250.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G675250.1.cds1Csa4G675250.1.cds1CDS
Csa4G675250.1.cds2Csa4G675250.1.cds2CDS