Csa4G675250 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G675250
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 23415992 .. 23416412 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGACGATGGGAAATCGAAAAATACGAGAACCTTATCTCAAACGTTAATCGATAGGCTGGGAAAAAGCCACACACACTCAAAGCACTATCTCGCTAAAGCCCACCACCAAATTTCTACCTTCTTTGCCTTCACCACCATATGTTTTTCAAAACATTCCTCATCCACTCCAACCTCTTCAACTCTCTTTCACTCACCACTCTCTTCTTCTGGTATCTACAACTCTTCTAATTCCAACTCAAAGACGCTCTTCAATGTCATGTGGCATGCTCCAACAGGTAGCTCATTCCCACTGCTGATTACCCATTTTCTTGTTGTTAGGTTTTACCCTTTTCATTTGCTTCCATCAGCTTTTTGATTGTTTTATTATATACTTCTGTAATCACTTGTGGGAATTCCGTTTTGTTGGGTCAGATTGA

mRNA sequence

ATGTGTGACGATGGGAAATCGAAAAATACGAGAACCTTATCTCAAACGTTAATCGATAGGCTGGGAAAAAGCCACACACACTCAAAGCACTATCTCGCTAAAGCCCACCACCAAATTTCTACCTTCTTTGCCTTCACCACCATATGTTTTTCAAAACATTCCTCATCCACTCCAACCTCTTCAACTCTCTTTCACTCACCACTCTCTTCTTCTGGTATCTACAACTCTTCTAATTCCAACTCAAAGACGCTCTTCAATGTCATGTGGCATGCTCCAACAGATTGA

Coding sequence (CDS)

ATGTGTGACGATGGGAAATCGAAAAATACGAGAACCTTATCTCAAACGTTAATCGATAGGCTGGGAAAAAGCCACACACACTCAAAGCACTATCTCGCTAAAGCCCACCACCAAATTTCTACCTTCTTTGCCTTCACCACCATATGTTTTTCAAAACATTCCTCATCCACTCCAACCTCTTCAACTCTCTTTCACTCACCACTCTCTTCTTCTGGTATCTACAACTCTTCTAATTCCAACTCAAAGACGCTCTTCAATGTCATGTGGCATGCTCCAACAGATTGA

Protein sequence

MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTSSTLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD*
Homology
[Close]
BLAST of Csa4G675250 vs. TrEMBL
Match: A0A0A0L0W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G675250 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 6.9e-48
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTS 60
          MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTS
Sbjct: 1  MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTS 60

Query: 61 STLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD 95
          STLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD
Sbjct: 61 STLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD 94

[Close]
BLAST of Csa4G675250 vs. NCBI nr
Match: gi|700200417|gb|KGN55575.1| (hypothetical protein Csa_4G675250 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 9.9e-48
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTS 60
          MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTS
Sbjct: 1  MCDDGKSKNTRTLSQTLIDRLGKSHTHSKHYLAKAHHQISTFFAFTTICFSKHSSSTPTS 60

Query: 61 STLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD 95
          STLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD
Sbjct: 61 STLFHSPLSSSGIYNSSNSNSKTLFNVMWHAPTD 94

The following BLAST results are available for this feature:
BLAST of Csa4G675250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0W1_CUCSA6.9e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G675250 PE=4 SV=1[more]
BLAST of Csa4G675250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200417|gb|KGN55575.1|9.9e-48100.00hypothetical protein Csa_4G675250 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU128334cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G675250.1Csa4G675250.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU128334CU128334transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G675250ClCG11G016260Watermelon (Charleston Gray)cuwcgB281
Csa4G675250CmaCh01G013410Cucurbita maxima (Rimu)cmacuB479
Csa4G675250CsGy4G025860Cucumber (Gy14) v2cgybcuB166
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G675250Watermelon (97103) v2cuwmbB281
Csa4G675250Wax gourdcuwgoB416
Csa4G675250Cucurbita moschata (Rifu)cmocuB469
Csa4G675250Melon (DHL92) v3.5.1cumeB319
Csa4G675250Watermelon (97103) v1cuwmB352
Csa4G675250Cucurbita pepo (Zucchini)cpecuB571
Csa4G675250Bottle gourd (USVL1VR-Ls)culsiB289
Csa4G675250Melon (DHL92) v3.6.1cumedB306