Csa4G664230.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G664230.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 23071779 .. 23072090 (-)
Sequence length	153

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCCAGTGGAGAACAGACAATTCAACCATAGCAGTGAGAAGGAAGGCAGAGAAATGATGAGATGGTAGGTCTGTTGAGAAATTGGAGTCCTCGTTGAGAGGGATGAGGTGTGGTCTGTAGCGAGGGATCGAGCGAAGGTGGAGAAGTGGGAGAAGACAAGAAGCCGATTGCCAATATACCGAACAACAACAAAGGAAAGGAATAAAAAATGAAAGGAAAATTCAGGTAACCATAACCATTTCTACACACTAAATTCCTCTCTCAATCTCGCTGTCTTAGCAACCGGTAATAAGTAATATTACATCTTT

mRNA sequence

ATGATCCCAGTGGAGAACAGACAATTCAACCATAGCAGTGAGAAGGAAGGCAGAGAAATGATGAGATGCGAGGGATCGAGCGAAGGTGGAGAAGTGGGAGAAGACAAGAAGCCGATTGCCAATATACCGAACAACAACAAAGGAAAGGAATAA

Coding sequence (CDS)

ATGATCCCAGTGGAGAACAGACAATTCAACCATAGCAGTGAGAAGGAAGGCAGAGAAATGATGAGATGCGAGGGATCGAGCGAAGGTGGAGAAGTGGGAGAAGACAAGAAGCCGATTGCCAATATACCGAACAACAACAAAGGAAAGGAATAA

Protein sequence

MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE*

Homology

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BLAST of Csa4G664230.1 vs. TrEMBL
Match: A0A0A0L0S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664230 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.0e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1


Query: 1  MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE 51
          MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE
Sbjct: 1  MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE 50

[Close]

BLAST of Csa4G664230.1 vs. NCBI nr
Match: gi|700200357|gb|KGN55515.1| (hypothetical protein Csa_4G664230 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 7.2e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1


Query: 1  MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE 51
          MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE
Sbjct: 1  MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE 50

The following BLAST results are available for this feature:

BLAST of Csa4G664230.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0S0_CUCSA	5.0e-21	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664230 PE=4 SV=1	[more]

BLAST of Csa4G664230.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200357\|gb\|KGN55515.1\|	7.2e-21	100.00	hypothetical protein Csa_4G664230 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G664230	Csa4G664230	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa4G664230.1	Csa4G664230.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa4G664230.1.utr3p1	Csa4G664230.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa4G664230.1.cds2	Csa4G664230.1.cds2	CDS
Csa4G664230.1.cds1	Csa4G664230.1.cds1	CDS