Csa4G647420.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa4G647420.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 22137767 .. 22138959 (+)
Sequence length216
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGACATAAGCTTCTGATGTTAACTTGATTTTGTACCTTTTTTTGTTTTGGTTCATCTTGGTGTCCATGTTTCAATCAACTAATATATAATATCTAAGTTGGAATCGTTTGGGTCATCAAATGAAATGAAGTTGTGCTGGACTATAAGATGTAGTTCATCAAAAAAGTATAAAATTCGTAGTGTGAAAATTTTGCCATATTCTAAGACCATATGCGATATTTGGTATATATTATTCTGAAGAACTAGTTTTCCATGGTATACATATATATAGAACGCGATACAACGAGCATAGCCTGCTCATCTCTGTTTCTCATTTCCCTTTTCTTTTACACCTTTGTGGTTAGTTATTCCACCATTTTTTGTTTTTTTTTTTTTTTTGTTTTTTCTCACCTTCTATCTTTTTGTTTTAGTTGAAGCGAAGTGGGTTTCTGTTCTTAGACATTGCTTCTGCTTGTGGGTGTGATTTTGTATTCAATCCACTCTCTCTGCCTCTGTTTTCTGGTAAGTTTACCTTTAACAATGTGGGTTTTGCTGGGTCTTTTTGTGATGCAAGTTTTCTTTATTAAGCTTGATGATTTTGATTGTTGCGTCTTGGTTTGCTCTTAATGACCCTGTTCTTCGATTTCGTTTGTTTAGAGCTAGGTTTTGATTCTGATGGATGTGAACGGCAATAAACCAAAAGTCGTTCGAAGAAGTTCGTCTCAGAAGGAAGGTGAAAATGCTGGCCAAGTTGTGGTTGAAATTAGCAATAGCAGCGTTGTGTTTTCGAAAGAAACCAGAGATGGAAATAACTACTCTGTACTGAAACAAGACAGAGTCGATTCACAGAACAAAGAGTCGACTGGTTCGAGCATTGACCATGGCTTCGATTCACATATTCCTCCCACTGCCAATGAGCCCTTGAAAATTCCCAGTTCAAATAGAACCCTCACGCCTAGAAGATCTCTCAAAAGATCAATTCTATCGAGACCCAAATCCAGATTTGGGGAACAGTCACGTTACACCGATTCAGATGATAAGTTTGAGGAGAAACATGAGTCATTGAGAGAACAAACCGGTGCAACTTCATCCAGAAGCTCTTCTCTTAACACGCCGAAGGCCCAACCTGAGGAAGAAGATGAAGAGGATATAGTTAAGACAGAGCAGTTGAACAAAAAGCACAAGAAATGGAAGGTGAAGACAGTGATTAAGTG

mRNA sequence

ATGGTATACATATATATAGAACGCGATACAACGAGCATAGCCTGCTCATCTCTGTTTCTCATTTCCCTTTTCTTTTACACCTTTGTGTTGAAGCGAAGTGGGTTTCTGTTCTTAGACATTGCTTCTGCTTGTGGGTGTGATTTTGTATTCAATCCACTCTCTCTGCCTCTGTTTTCTGAGCTAGGTTTTGATTCTGATGGATGTGAACGGCAATAA

Coding sequence (CDS)

ATGGTATACATATATATAGAACGCGATACAACGAGCATAGCCTGCTCATCTCTGTTTCTCATTTCCCTTTTCTTTTACACCTTTGTGTTGAAGCGAAGTGGGTTTCTGTTCTTAGACATTGCTTCTGCTTGTGGGTGTGATTTTGTATTCAATCCACTCTCTCTGCCTCTGTTTTCTGAGCTAGGTTTTGATTCTGATGGATGTGAACGGCAATAA

Protein sequence

MVYIYIERDTTSIACSSLFLISLFFYTFVLKRSGFLFLDIASACGCDFVFNPLSLPLFSELGFDSDGCERQ*
Homology
[Close]
BLAST of Csa4G647420.1 vs. TrEMBL
Match: A0A0A0L2V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G647420 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.2e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MVYIYIERDTTSIACSSLFLISLFFYTFVLKRSGFLFLDIASACGCDFVFNPLSLPLFSE 60
          MVYIYIERDTTSIACSSLFLISLFFYTFVLKRSGFLFLDIASACGCDFVFNPLSLPLFSE
Sbjct: 1  MVYIYIERDTTSIACSSLFLISLFFYTFVLKRSGFLFLDIASACGCDFVFNPLSLPLFSE 60

Query: 61 LGFDSDGCERQ 72
          LGFDSDGCERQ
Sbjct: 61 LGFDSDGCERQ 71

[Close]
BLAST of Csa4G647420.1 vs. NCBI nr
Match: gi|700200211|gb|KGN55369.1| (hypothetical protein Csa_4G647420 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 8.9e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MVYIYIERDTTSIACSSLFLISLFFYTFVLKRSGFLFLDIASACGCDFVFNPLSLPLFSE 60
          MVYIYIERDTTSIACSSLFLISLFFYTFVLKRSGFLFLDIASACGCDFVFNPLSLPLFSE
Sbjct: 1  MVYIYIERDTTSIACSSLFLISLFFYTFVLKRSGFLFLDIASACGCDFVFNPLSLPLFSE 60

Query: 61 LGFDSDGCERQ 72
          LGFDSDGCERQ
Sbjct: 61 LGFDSDGCERQ 71

The following BLAST results are available for this feature:
BLAST of Csa4G647420.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2V3_CUCSA6.2e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G647420 PE=4 SV=1[more]
BLAST of Csa4G647420.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200211|gb|KGN55369.1|8.9e-33100.00hypothetical protein Csa_4G647420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa4G647420Csa4G647420gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa4G647420.1Csa4G647420.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G647420.1.utr5p1Csa4G647420.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G647420.1.cds1Csa4G647420.1.cds1CDS
Csa4G647420.1.cds2Csa4G647420.1.cds2CDS
Csa4G647420.1.cds3Csa4G647420.1.cds3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G647420.1.utr3p1Csa4G647420.1.utr3p1three_prime_UTR