Csa4G647420 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G647420
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 22137767 .. 22138959 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGACATAAGCTTCTGATGTTAACTTGATTTTGTACCTTTTTTTGTTTTGGTTCATCTTGGTGTCCATGTTTCAATCAACTAATATATAATATCTAAGTTGGAATCGTTTGGGTCATCAAATGAAATGAAGTTGTGCTGGACTATAAGATGTAGTTCATCAAAAAAGTATAAAATTCGTAGTGTGAAAATTTTGCCATATTCTAAGACCATATGCGATATTTGGTATATATTATTCTGAAGAACTAGTTTTCCATGGTATACATATATATAGAACGCGATACAACGAGCATAGCCTGCTCATCTCTGTTTCTCATTTCCCTTTTCTTTTACACCTTTGTGGTTAGTTATTCCACCATTTTTTGTTTTTTTTTTTTTTTTGTTTTTTCTCACCTTCTATCTTTTTGTTTTAGTTGAAGCGAAGTGGGTTTCTGTTCTTAGACATTGCTTCTGCTTGTGGGTGTGATTTTGTATTCAATCCACTCTCTCTGCCTCTGTTTTCTGGTAAGTTTACCTTTAACAATGTGGGTTTTGCTGGGTCTTTTTGTGATGCAAGTTTTCTTTATTAAGCTTGATGATTTTGATTGTTGCGTCTTGGTTTGCTCTTAATGACCCTGTTCTTCGATTTCGTTTGTTTAGAGCTAGGTTTTGATTCTGATGGATGTGAACGGCAATAAACCAAAAGTCGTTCGAAGAAGTTCGTCTCAGAAGGAAGGTGAAAATGCTGGCCAAGTTGTGGTTGAAATTAGCAATAGCAGCGTTGTGTTTTCGAAAGAAACCAGAGATGGAAATAACTACTCTGTACTGAAACAAGACAGAGTCGATTCACAGAACAAAGAGTCGACTGGTTCGAGCATTGACCATGGCTTCGATTCACATATTCCTCCCACTGCCAATGAGCCCTTGAAAATTCCCAGTTCAAATAGAACCCTCACGCCTAGAAGATCTCTCAAAAGATCAATTCTATCGAGACCCAAATCCAGATTTGGGGAACAGTCACGTTACACCGATTCAGATGATAAGTTTGAGGAGAAACATGAGTCATTGAGAGAACAAACCGGTGCAACTTCATCCAGAAGCTCTTCTCTTAACACGCCGAAGGCCCAACCTGAGGAAGAAGATGAAGAGGATATAGTTAAGACAGAGCAGTTGAACAAAAAGCACAAGAAATGGAAGGTGAAGACAGTGATTAAGTG

mRNA sequence

ATGGTATACATATATATAGAACGCGATACAACGAGCATAGCCTGCTCATCTCTGTTTCTCATTTCCCTTTTCTTTTACACCTTTGTGTTGAAGCGAAGTGGGTTTCTGTTCTTAGACATTGCTTCTGCTTGTGGGTGTGATTTTGTATTCAATCCACTCTCTCTGCCTCTGTTTTCTGAGCTAGGTTTTGATTCTGATGGATGTGAACGGCAATAA

Coding sequence (CDS)

ATGGTATACATATATATAGAACGCGATACAACGAGCATAGCCTGCTCATCTCTGTTTCTCATTTCCCTTTTCTTTTACACCTTTGTGTTGAAGCGAAGTGGGTTTCTGTTCTTAGACATTGCTTCTGCTTGTGGGTGTGATTTTGTATTCAATCCACTCTCTCTGCCTCTGTTTTCTGAGCTAGGTTTTGATTCTGATGGATGTGAACGGCAATAA

Protein sequence

MVYIYIERDTTSIACSSLFLISLFFYTFVLKRSGFLFLDIASACGCDFVFNPLSLPLFSELGFDSDGCERQ*
Homology
[Close]
BLAST of Csa4G647420 vs. TrEMBL
Match: A0A0A0L2V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G647420 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.2e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MVYIYIERDTTSIACSSLFLISLFFYTFVLKRSGFLFLDIASACGCDFVFNPLSLPLFSE 60
          MVYIYIERDTTSIACSSLFLISLFFYTFVLKRSGFLFLDIASACGCDFVFNPLSLPLFSE
Sbjct: 1  MVYIYIERDTTSIACSSLFLISLFFYTFVLKRSGFLFLDIASACGCDFVFNPLSLPLFSE 60

Query: 61 LGFDSDGCERQ 72
          LGFDSDGCERQ
Sbjct: 61 LGFDSDGCERQ 71

[Close]
BLAST of Csa4G647420 vs. NCBI nr
Match: gi|700200211|gb|KGN55369.1| (hypothetical protein Csa_4G647420 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 8.9e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MVYIYIERDTTSIACSSLFLISLFFYTFVLKRSGFLFLDIASACGCDFVFNPLSLPLFSE 60
          MVYIYIERDTTSIACSSLFLISLFFYTFVLKRSGFLFLDIASACGCDFVFNPLSLPLFSE
Sbjct: 1  MVYIYIERDTTSIACSSLFLISLFFYTFVLKRSGFLFLDIASACGCDFVFNPLSLPLFSE 60

Query: 61 LGFDSDGCERQ 72
          LGFDSDGCERQ
Sbjct: 61 LGFDSDGCERQ 71

The following BLAST results are available for this feature:
BLAST of Csa4G647420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2V3_CUCSA6.2e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G647420 PE=4 SV=1[more]
BLAST of Csa4G647420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200211|gb|KGN55369.1|8.9e-33100.00hypothetical protein Csa_4G647420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU127281cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G647420.1Csa4G647420.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU127281CU127281transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G647420Watermelon (97103) v2cuwmbB290
Csa4G647420Watermelon (97103) v2cuwmbB306
Csa4G647420Watermelon (97103) v2cuwmbB331
Csa4G647420Wax gourdcuwgoB386
Csa4G647420Wax gourdcuwgoB419
Csa4G647420Wax gourdcuwgoB422
Csa4G647420Wax gourdcuwgoB428
Csa4G647420Cucumber (Chinese Long) v2cucuB024
Csa4G647420Cucumber (Chinese Long) v2cucuB154
Csa4G647420Cucumber (Gy14) v1cgycuB424
Csa4G647420Cucumber (Gy14) v1cgycuB507
Csa4G647420Cucurbita maxima (Rimu)cmacuB133
Csa4G647420Cucurbita maxima (Rimu)cmacuB020
Csa4G647420Cucurbita maxima (Rimu)cmacuB078
Csa4G647420Cucurbita maxima (Rimu)cmacuB473
Csa4G647420Cucurbita moschata (Rifu)cmocuB011
Csa4G647420Cucurbita moschata (Rifu)cmocuB068
Csa4G647420Cucurbita moschata (Rifu)cmocuB119
Csa4G647420Cucurbita moschata (Rifu)cmocuB453
Csa4G647420Cucurbita moschata (Rifu)cmocuB463
Csa4G647420Melon (DHL92) v3.5.1cumeB284
Csa4G647420Melon (DHL92) v3.5.1cumeB287
Csa4G647420Melon (DHL92) v3.5.1cumeB313
Csa4G647420Watermelon (Charleston Gray)cuwcgB268
Csa4G647420Watermelon (Charleston Gray)cuwcgB294
Csa4G647420Watermelon (Charleston Gray)cuwcgB309
Csa4G647420Watermelon (97103) v1cuwmB285
Csa4G647420Watermelon (97103) v1cuwmB302
Csa4G647420Watermelon (97103) v1cuwmB320
Csa4G647420Cucurbita pepo (Zucchini)cpecuB140
Csa4G647420Cucurbita pepo (Zucchini)cpecuB375
Csa4G647420Cucurbita pepo (Zucchini)cpecuB564
Csa4G647420Cucurbita pepo (Zucchini)cpecuB679
Csa4G647420Cucurbita pepo (Zucchini)cpecuB782
Csa4G647420Bottle gourd (USVL1VR-Ls)culsiB270
Csa4G647420Bottle gourd (USVL1VR-Ls)culsiB291
Csa4G647420Bottle gourd (USVL1VR-Ls)culsiB299
Csa4G647420Cucumber (Gy14) v2cgybcuB027
Csa4G647420Cucumber (Gy14) v2cgybcuB166
Csa4G647420Cucumber (Gy14) v2cgybcuB275
Csa4G647420Cucumber (Gy14) v2cgybcuB318
Csa4G647420Melon (DHL92) v3.6.1cumedB270
Csa4G647420Melon (DHL92) v3.6.1cumedB272
Csa4G647420Melon (DHL92) v3.6.1cumedB298
Csa4G647420Silver-seed gourdcarcuB0103
Csa4G647420Silver-seed gourdcarcuB0656
Csa4G647420Silver-seed gourdcarcuB0789